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Crash Course Ecology 
Notes Created By Jack Lance 
 
The History of Life on Earth 
 
● About ​4 billion years ago​, when the Earth’s first oceans formed, life 
happened via the bonding and reactions of molecules found in the 
water. ​We don’t know how it happened​, but it did.  
● First life was ​likely a grouping of chemicals surrounding a 
membrane​, because as we know, ​phospholipids​ (being 
hydrophobic) spontaneously form ​bilayers​ when in water.  
○ Over time, these likely transformed into amino acids, and 
eventually ​RNA​.  
● These collections of chemicals trapped in membranes, called 
protobionts​, most likely began to grow, split and replicate until 
some copying error gave way to ​DNA nucleotides​, which is a much 
more stable repository for genetic material than RNA because it is 
double stranded​, not ​single stranded (RNA)​.  
● First living things were ​Prokaryotes​, single­celled organisms with 
no nuclei​, that were probably very similar to the archaea we find 
living today in hydrothermal vents, sulfur hot springs, etc.. 
(​Extremophiles​) 
○ likely showed up around ​3.9­3.5 billion years​ ago during the 
Archaean Eon​. The first of ​3 eons​ in Earth’s history.  
■ The ​Archaean 
■ The ​Proterozoic 
■ The ​Phanerozoic 
● These are broken up into ​Eras, Periods and 
Epochs 
○ From ​3.5­3.1 billion years​ ago, prokaryotes were all alone on 
Earth, but then​ the amount of Oxygen in the atmosphere shot 
from 0­10% in a very short period of time​ (geologically 
speaking).  
■ Likely produced by a new prokaryote, ​Cyanobacteria​, 
which figured out how to make its own food through 
Photosynthesis​.  
■ This ​Oxygen Revolution​ killed off many prokaryotes 
that had evolved without Oxygen 
○ About ​2.1 billion years​ ago, a new kind of organism 
appeared­ ​Eukaryotes​. These include (today) ​all plants and 
animals. 
 
■ the Eukaryotes likely evolved through a process called 
Endosymbiosis​, in which one prokaryote parasitized 
another, resulting in a mutual relationship and 
Mitochondria​.  
○ About ​1.5 billion years​ ago, ​Multicellular​ eukaryotic 
organisms begin showing up, the very first ​likely being algae​.  
○ Around ​535 million years​ ago, the Eukaryotes went berserk.  
■ This is known as the ​Cambrian Explosion​. A major 
biological golden­age when the diversity of all animal life 
on Earth ‘exploded’.  
■ Creatures ​began to use minerals​ to create shells, 
skeletal structures, claws and defensive plates.  
○ This brought about the dawn of the ​Phanerozoic Eon 
■ The one we are in currently 
○ Around ​500 million years​ ago, during the ​Ordovician Period​, 
plants, animals and fungi ​started colonizing the land​ (likely 
to escape predation).  
○ During the ​Devonian Period​, about ​365 million years​ ago, 
Tetrapods​ (4­legged vertebrates) and ​Arthropods​ began 
showing up on land.  
○ The ​Carboniferous Period​, that extended from ​359­299 
million years ago​, heralded a major development of plants.  
■ The forests were so dense and widespread that they 
made all the fossil fuels we now use.  
■ These forests created so much oxygen that the 
atmosphere was around 35% O2, rather than today’s 
21% 
■ This O2 cooled the planet, ​crashing the entire system​.  
○ During the ​Permian Period​, ​299­251 million years ago​, all 
the landmasses of the world joined to form one giant continent 
we know as ​Pangea​.  
■ We begin to see ​Gymnosperms​ (the first plants with 
seeds), and ​Archosaurs​.  
■ About ​252 million years ago​, the ​Permian­Triassic 
Extinction​ ​took place.  
● 96% of all marine species​ and ​70% of terrestrial 
vertebrate​ went extinct, and is the only known 
mass extinction of insects (​57% of all taxonomic 
families and 83% of all genera​ went extinct) 
● The most significant extinction event on the plant. 
Ever. 
● Dawned the age of the Dinosaurs. Not much 
competition allowed evolution to fill many available 
niches​ (a combination of biotic and abiotic 
resources that a species could use to survive)​. 
○ During the ​Jurassic Period​, about ​199­145 million years 
ago, large herbivorous dinosaurs and smaller carnivorous 
dinosaurs were roaming the Earth. (There were also 
mammals, small, but still there) 
■ 65 million years ago​, all the Dinosaurs went extinct 
(currently ​only theories​ suggest why), except for their 
surviving descendants­ ​the birds​.  
○ About ​100 million​ years ago, ​Angiosperms​, or flowering 
plants, appeared. Flying insects evolved with them, providing 
an ideal vehicle for reproduction.  
■ Coevolution 
○ On a geological scale, that brings us up to now.  
 
Population Ecology 
 
● Population Ecology​: Groups within a species and​ how they interact 
and live together​ in one geographic area.  
○ Fundamental Principles​ of Population Ecology include: 
■ A population is just ​a group of individuals of one 
species who interact regularly 
■ How often organisms interact has a lot to do with 
Geography​. You compete with those closer to you for 
food, living space, reproductive privileges, etc..  
■ Population Density​, or how many of a population are in 
a ​specific area that might come into contact with each 
other​.  
■ Geographic Arrangement​ of individuals within the 
population. This is also known as​ Dispersion​.  
■ Population Growth​.  
● All kinds of factors drive this: 
○ Fecundity​ (how many offspring an individual 
can have) 
○ Limiting Factors​, the biotic and abiotic 
factors that ​limit​ population growth. 
○ Niche Requirements 
○ Mates and Mating 
● Categorized into: 
○ Density­Dependent​(Is the population being 
controlled by how many individuals are in 
it?)­ limit growth​ due to environmental stress 
caused by population size​.  
○ Density­Independent​(Is the population 
being controlled by something else?)­ limit 
growth ​due to external factors like a volcanic 
eruption, monsoon, etc..  
● Carrying Capacity​ is the ​Number or individuals 
that a habitat can sustain with the resources 
available​. Once ​Density Dependent​ limiting 
factors kick in, that’s a pretty good sign of a 
population reaching its carrying capacity.   
■ Any population of anything, according to math, ​will grow 
exponentially until, for some reason, it can’t 
anymore​.  
● Known as ​Exponential Growth​. 
○ The population grows ​at a rate proportional to 
the size of the population​. 
● Once the population reaches these limiting factors, 
it will only experience​ ​Logistic Growth​.  
○ This means that the population is ​limited to 
the carrying capacity of its habitat​. 
 
■ Mathematical Equation for population growth: 
● R = (Natality ­ Mortality)/(N) 
● R refers to Rate of growth 
● N refers to Initial Population Size 
 
And as for Growth over a Period: 
 
 
● Community Ecology​: ​Focused on groups of different organisms 
living together, and figuring out how they influence each other.  
● Ecosystem Ecology​: The study of how all living and nonliving 
things interact within an entire ecosystem.  
 
Human Population Growth 
 
● Since about ​1650​, Human population has been undergoing the 
longest period of exponential growth​ of any large animal​ in 
history. 
○ In ​1650​, there were about ​500 million people​ on the planet  
○ By ​1850​ the population had ​doubled to 1 billion 
○ Doubled again​ just ​80 years later 
○ Doubled again​ just ​45 years later 
○ Now well past ​7 billion and counting 
● Perennial problem​ in nature and in our lives: 
○ Quality or Quantity​? 
○ All organisms make a similar choice through how they 
reproduce: 
■ R vs K Selection Theory 
● R vs K Selection Theory​ states that some organisms reproduce in 
a way that aims for huge,​ exponential growth​, while others aim for 
a smaller, ​more intimate ​relationship with their offspring. (​K 
reproducers​ are typically content ​only creating enough offspring to 
hit the Carrying Capacity​ of their habitat) 
○ R­selected species​ produce ​very rapidly​ and ​do not invest 
time in raising offspring​. R standing for the ‘​maximum rate of 
a population’​.   
○ K­selected species​ only produce a ​few offspring​ within their 
lifetime, and ​invest a lot of time and energy​ raising them. K 
standing for ‘​Carrying Capacity​’.  
○ Most animals aren’t very strongly K­ or R­ selected​. It’s 
more of a spectrum: Some organisms­ usually​ small ones­ 
tend to reproduce more on the R­ side​, while ​larger 
organisms tend to reproduce more on the K­ side​. ​Most 
species are somewhere in the middle.  
○ Contradiction of Humans = We tend to reproduce and raise 
our offspring in a ​K­selected manner​, yet over the past 300+ 
years, ​our population curve looks suspiciously like that of an 
R­selected Species​.  
 
■ Even then, ​most exponential growth rates​, even for 
R­Selected species, usually ​do not go on for 350 
years. 
■ We’ve been able to do this because ​we learned how to 
eliminate limiting factors​ that would’ve plateaued 
(made us reach our carrying capacity) and eventually 
diminished our population. 
● Agricultural advances 
● Medical advances 
● Not being so Disgusting! (Sewage) 
● Adapting to Inhospitable Places 
○ Ecological Footprint​: Calculation of ​how much land and how 
many resources each person on the planet requires to live​.  
■ Varies ​geographically​ and determined by​ lifestyle​.  
 
Community Ecology 
 
● Competition:​ Because there is a finite amount of resources on the 
planet, ​evolution drives us to compete for them​ so that we can 
live long enough to reproduce.   
○ Important part of how different species interact when their 
habitats overlap. These interactions define​ ​Ecological 
Communities 
● Interspecific Competition​:​ When communities of the ​similar 
species compete for the same resources needed for their survival 
and continued population growth. ​i.e. weeds competing with 
sunflowers for the nutrients and water in soil​. 
● Finite Resources​ are typically ​limiting factors​ in competition.  
● Competitive Exclusion​:​ When one species ​eliminates ​another 
competing for the same resources.  
○ When two species are competing for the same resources, ​one 
of them will eventually be more successful​, and eliminate 
the other.  
○ Not all resources are limiting.  
○ Most species​, even ones that are nearly identical, ​are 
adaptable ​enough to find a way to survive in the face of 
competition.  
■ This is done by finding an ​ecological niche​.­ the ​sum of 
all resources, both biotic and abiotic, that a species use 
in it’s environment.  
● Fundamental Niche​:​ an ​Ideal​ niche in which a species can live the 
way it naturally wants to ​should there be no competition​. Few 
species ever achieve this.  
● Most species​, in order to ​avoid competitive exclusion ​and 
continue living, take up a ​Realized Niche­ ​Or, the ​niche in which a 
species lives in the presence of competitive exclusion​.  
● Canadian Ecologist, ​Robert Macarthur​, made a discovery that 
made him one of the most influential ecologists of the 20th century.  
○ While researching at Yale in ​1958​, he studied ​5 species of 
warblers ​that live in coniferous forests. At the time, because 
of the sheer amount of warblers living in the same area, ​many 
ecologists thought they occupied the same ecological niche​.  
○ Macarthur studied the birds for many seasons, ​dividing 
individual trees different warblers lived in​, and observed 
that ​each species of warbler divided it’s time differently 
among the various parts of the tree.  
○ The warblers had ​different hunting and foraging habits, and 
even bred at different times of the year so that their highest 
food requirements didn’t overlap​.  
○ This was the first recorded observation of a ​Realized Niche​.  
■ This phenomenon is now known as ​Resource 
Partitioning​. (when similar species settle into separate 
niches that ​let them coexist​) 
● Mutualism​: When two species ​benefit by forming relationships 
through conflict­avoidance​. Both provide a service, and both 
benefit.  
○ Obligate Mutualism​: relationship in which ​one species would 
die if the other was not there​.  
● Commensalism​:​ Relationship in which ​One species benefits​, and 
the ​other is unaffected/neutral​ toward the relationship.  
 
Community Ecology II: Predation 
 
● Herbivory:​ Predation in which an ​organism eats primary 
producers 
● Parasitism:​ Predation in which ​organisms derive energy from a 
host​, usually harming it, and ​sometimes killing it in the process​. 
● The need to survive causes predator and prey to adapt to ​develop 
both weapons and defenses ​in a never­ending evolutionary change.  
○ Hunting and feeding adaptations for predators 
○ Detection, Capture and Handling adaptations for prey 
■ To avoid ​Detection​, some creatures have developed 
Cryptic Coloration​ (camouflage​) 
■ Avoiding ​Capture​, some animals have developed ​speed 
advantages​, and some find ​safety in numbers ​(like 
Bison), forming giant herds.  
■ Preventing ​Handling​ can appear in many ways, such as 
plants growing thorns​, creating ​sap that traps 
insects​, ​chemical weapons ​like the tobacco plant’s 
nicotine, ​Aposematic Coloration ​(​Warning Coloration), 
Mullerian Mimicry​ ​(​alike coloring of similar types of 
poisonous species), ​Batesian Mimicry​ ​(​The ​copying​ a 
poisonous creature’s appearance ​by non­threatening 
creatures) 
 
 
 
 
 
 
Ecological Succession 
 
● Primary Succession​:​ Happens during a large ecological event, such 
as a volcanic eruption, glacial freeze, asteroid impact, superstorm, 
etc.. ​When organisms populate an area for the first time​. 
○ Advantage = No competition (​Pioneer Species​ = 
prokaryotes/protists​) 
○ Exclusively plants, typically with wind­borne seeds like 
lycophytes.  
○ Objective = ​to build/rebuild soils 
○ Takes a very, very long time. 
 
● Secondary Succession: ​Once the soils are ready, larger plants are 
able to move in and repopulate. ​Usually the first response after a 
smaller disturbance like a flood or fire.  
○  These small disturbances that stimulate secondary 
succession lead to development of a ​Microclimate (a small 
climate in the area of succession that slightly differs from the 
climate around it).  
○ This microclimate leads to different niches, plant populations, 
animal populations, and can even change the ecosystem 
within its area.  
 
● Climax Community Model​: ​Observation in which ​communities 
show a tendency to morph over time​, changing until it becomes a 
Climax Community​, in which it would have a ​predictable 
assemblage of species that would remain stable until the next major 
disturbance.  
○ Stochasticity​: Randomness. Prevents us from ever knowing 
exactly what a community will look like after a disturbance. 
Element of unpredictable variability.  
○ Ecosystem Stabilization​: Issue because ecological 
communities can never really become ‘stable’, as there is 
always some aspect of change occurring.   
○ We can tell that an ecosystem is in later stages of succession 
determinant upon its level of ​Biodiversity​.  
■ High Biodiversity​:​ When there are many niches that are 
occupied by organisms.  
● Only way for there to be High BioD, is for an 
Ecosystem to have thousands of communities​, 
meaning it is in the latter stages of succession.  
 
● Intermediate Disturbance Hypothesis​:​ Theory that ​intermediate 
disturbances (not too big, not too little), are ideal for the overall 
development of a community and Ecosystem.  
○ More niches = more Biodiversity; more Biodiversity = more 
stability and healthier ecosystems.  
 
Ecosystem Ecology 
 
● Defining an Ecosystem​: A ​collection of living and nonliving things 
that interact with each other in a certain way​.  
○ Simultaneously­ ​It depends 
■ Want to know how energy and materials come in and 
move through a tree with a specific community of insect 
protists in it? That is an ecosystem, etc... 
■ Ecosystem can be measured via 
● Biomass: ​The total weight of all living things within 
the ecosystem.  
● Productivity​: How much stuff is produced and how 
quickly it grows back. 
● Retention 
■ Where do the materials come from? (Water, Nitrogen, 
Phosphorus, etc..) 
● Energy 
○ Law of conservation of matter; same goes for 
an ecosystem. 
  
● All energy (food)  in an ecosystem move through it ​indefinitely​ via 
transference in ​T​rophic levels​.  
○ Primary source of Energy: ​Solar/Photosynthesis​ ​via ​Primary 
Producers 
■ Primary Producers​ are then consumed by 
Heterotrophs​ (Herbivores),​ aka ​Primary Consumers.  
■ Primary Consumers​ then Eaten by ​Secondary 
Consumers​ and so on, until ​Decomposers​ (Detrivores) 
eat the dead consumers.  
■ Efficiency of energy transference: 
○ 1/10 of energy is transferred​ to the 
consumer. 
 
● Unfortunately, if there are toxins involved, they do 
not abide by energy’s law of transference, and 
simply accumulate into the consuming organism.  
○ Known as ​Bioaccumulation 
 
 
Biogeochemical Cycles 
 
● Hydrologic Cycle​:​ How water moves on, above, and below the 
surface of the Earth­ ​driven by energy supplied by the Sun​ and the 
Wind.  
○ Easy to think of all the water on Earth as held in reservoirs. 
■ The ​Ocean 
■ The ​Atmosphere​ (clouds) 
■ The ​Polar Ice Caps 
■ So not only does water cycle through different places, 
but also takes ​different forms​ at different places in the 
cycle​ (liquid, solid, gas).  
○ No Beginning or End 
○ 1)​Precipitation 
■ Rain , Hail, Snow, etc.. ​Happens when water in the 
atmosphere condenses from a gas to a liquid and 
occasionally a solid.  
● (Opposite of condensation is ​evaporation​, and 
when a substance converts straight from a solid to 
a gas, that’s ​sublimation​, and the opposite of this 
is ​deposition​) 
● Condensation​ is responsible for clouds, which 
happens ​when air containing water vapor rises and 
cools or is compressed to the point where it can no 
longer be a gas​. At this point, the vapor forms 
droplets.  
● Wind moves clouds, and as water in clouds keeps 
condensing and getting heavier, ​gravity eventually 
takes over and pulls the condensed droplets to the 
ground​ in the form of rain, snow, hail, etc… 
● Gravity​ continues to work, pulling the water to its 
final resting place, typically the lowest nearby point. 
This is called ​runoff​. Or the water is pulled 
underground. 
● Most water ​is pulled through runoff after 
precipitation until it eventually reaches the ocean.  
 
 
 
 
 
● The Carbon Cycle​: 
○ Carbon absorbed by plants has ​3 possible fates 
■ It can be respired back into the atmosphere 
■ It can be eaten by an animal 
■ Or it can be present when the plant dies. 
 
 
*So what are Nitrogen and Phosphorus used for? 
● Animals are 3% Nitrogen and 1% Phosphorus 
● We need Nitrogen to make Amino 
Acids­>Proteins­>Bodies­>DNA & RNA 
● DNA and RNA also require Phosphorus 
○ AT​P​, and ​Phospho​lipid Bilayer 
 
Nitrogen Cycle 
● Nitrogen Gas (N2) makes up about 78% of the atmosphere 
○ Unfortunately, it is made up of two N atoms stuck together with 
a ​triple bond​. Very hard to break.  
● Plants need help to assimilate the N2​, and receive that help via 
Nitrogen Fixation​.  
○ Using ​Nitrogen­Fixing Bacteria​. Found in ​soil or water​, or in 
symbiotic relationships with root systems in Legumes​.  
○ These bacteria ​convert N2 into ​Ammonia​ (NH3)​, which then 
becomes ​Ammonium​ (NH4+) ​when mixed with water, which 
can be used by plants.  
○ They do this with a special enzyme­ ​Nitrogenase​­ which is ​the 
only biological enzyme​ that can break that triple bond.  
○ Ammonia can also be made by ​Decomposers​ like fungi when 
breaking down dead organic matter (proteins and DNA). Once 
this happens, other ​Nitrifying Bacteria​ ​can take this ammonia 
and convert it into ​Nitrates​ (NO3­)​­>3 Oxygen atoms attached 
to a Nitrogen atom, as well as ​Nitrites​ (NO2­) 
■ These are even ​easier than Ammonium for plants to 
assimilate 
● Other ways to break the bonds between the N atoms include 
○ Lightning 
○ Synthetic fixation (fertilizers) 
● The cycle continues ​(Bacteria­>Plants­>Animals­>Decomposers) 
UNTIL​ that Nitrogen finds itself in ​Denitrifying Bacteria​, whose job 
it is to ​metabolize the Nitrogen Oxides back into Nitrogen Gas​.  
○ This process uses a special enzyme called ​Nitrate 
Reductase​.  
 
 
The Phosphorus Cycle 
● Concentrated in the ​Lithosphere​.  
○ Rocks​ containing inorganic phosphates (especially 
sedimentary­ originating in old ocean floors and lakes) 
○ Not many rock­eating bacteria on Earth, only ​Lithotrophs​, so 
bacteria do little to expose the phosphorus 
● When the rocks are re­exposed (from underwater),​ and water 
erodes them​, some of the ​phosphates are dissolved​ into the water.  
○ These dissolved phosphates are ​immediately available to, and 
assimilated by plants​, which are then eaten by animals.  
○ As in the Nitrogen cycle, ​decomposers then release the 
phosphorus back into the soil and water​ via decomposing 
dead organic organisms.  
○ Decomposed phosphate is ​Immediately​ re­assimilated​ back 
into plants, and the cycle goes on.  
● Once that atom of phosphorus makes it way into some ​body of 
water​, it can cycle around the organisms there for 100,000 years.  
○ Eventually it will make its way into something that dies and 
falls into a hole so deep that decomposers can’t survive there 
and becomes sedimentation, which builds into 
rocks­>mountains­>erosion­>water 
● Humans have introduced ​synthetic fertilizers​, containing lots and 
lots of nitrogen and phosphorus­ but too much of a good thing is 
bad. This poses ​intense ecological stress​ on ecosystems. 
 
 
 
 
Human Impacts on the Environment 
 
● Human behaviour and lifestyle has already driven ​nearly 1,000 plant 
and animal species​ (to date) into extinction­ most of them over the 
last century.  
● Ecosystem Services​: Benefits the natural world provides us for 
free, typically things that we could​ ​never, ever duplicate​ on our own. 
○ Thus, having Ecosystems and keeping them intact is not only 
important for the organisms who live in them, but also for us.  
○ These services can be broken up into 4 categories 
■ Support Services​­ create and replenish the foundation 
of the Earth’s biological systems. (recycling the 
compounds that are necessary for life through the 
biogeochemical cycles, forming new soils, producing 
oxygen​) 
■ Provisioning Services​­ providing the raw materials we 
need to live. (The ​ocean providing food​, ​rivers give 
water​, plant fiber for clothing and shelter, ​sources of fuel 
in the form of biomass, hydropower, fossil fuels​) 
■ Regulating Services​­ Decomposers ​converting waste to 
energy​, plants ​filtering water and air​, ​producing oxygen 
and absorbing CO2​, etc.. 
■ (Cultural Services) Ecosystems Just Being 
Awesome​­ It’s nice to be surrounded by other living 
things, healthy ecosystems give us places to play, 
inspiration, grounds for education through study. Less 
tangible, but still important ​cultural​ services.  
● Ecosystems with ​High Biodiversity​ are much more resilient to and 
capable of handling that ​‘never­ending change’​, as well as being 
able to ​handle disturbances​ much better.  
○ In a High Biodiversity ecosystem, if you take one species out 
of the mix, ​it’s less likely that the ecosystem will collapse​.  
● Best way to see how we affect the environment is through how we 
affect biodiversity.  
○ Unfortunately, we have already endangered most of the 
highest biodiversity ecosystems on the planet.  
● Top Five ​ways that humans are messing up the Environment: 
○ 1) ​Deforestation​­ we currently cut through ​8,000 hectares​ of 
trees a day to provide land to graze cattle on, and to harvest 
wood 
○ 2)​ Desertification​­ Can be a side­effect of ​Deforestation​, in 
which dry, unproductive landscapes spread. Driven along by 
additional factors like ​overgrazing​ and ​over­irrigation​.  
■ Over­irrigation can cause Desertification because when 
we use groundwater to irrigate crops, ​the natural salts in 
that groundwater build up in the soil​, eventually making it 
so salty that nothing can grow.  
■ Over time, ecosystems near deserts become overtaxed, 
and the desert is able to spread into it.  
○ 3) ​Global Warming​­ Increase of CO2 in the atmosphere while 
decrease in the area of forests and lush ecosystems that 
provide regulation = bad. Melting Sea Ice leads to less habitat 
for polar bears, seals and sea birds. ​More temperate animals 
are moving closer to the poles, and hotter, drier conditions are 
causing more fires.  
■ Biggest problem with this is the ​time­frame​ of the 
disturbance. Changes like this have happened in the 
past, but took place over ​millennia​, allowing organisms 
time to ​adapt​, while these changes are taking place over 
our ​individual lifetimes​.  
○ 4) ​Introducing Non­Native Species​­ Both intentionally and 
unintentionally, this can lead to ​invasive species​, rapid niche 
changes, and ​ecosystem entropy​.  
○ 5)​ ​Overharvesting​­ ​Overfishing​ the oceans to meet growing 
demand for popular fish species, ​over­hunting ​predators like 
wolves to protect livestock. 
● Pollution​­ Any substance that’s in the ​wrong place​ or in the ​wrong 
concentrations in the environment.  
○ Trash in the environment­ Pollution 
○ Chemicals in the environment (both naturally occurring and 
synthetic)­ ​Real killers​. 
○ We tend to think of pollution as chemicals made in large 
chemical processing plants, and these are ​definitely a 
problem​, ​BUT​, ​natural compounds in wrong concentrations 
can do just as much damage​. 
● One of the main ways we are altering the concentrations of natural 
compounds is ​by messing with the biogeochemical cycles​.  
○ Most obvious cycle we’re altering = ​Carbon Cycle 
○ Cycle keeps going on, but problem is that we’re​ overloading​ it 
by digging up and ​burning carbon­rich coal, oil and gas​.  
○ Also been tampering with ​Nitrogen and Phosphorus cycles​, 
via ​increasing concentrations​ in the environment by ​creating 
synthetic fertilizers​ that can spread nutrients into the water, 
leading to large algal blooms that ‘choke­out’ the rest of the 
plants and animals in the stream​.  
■ Also cause ​Dead Zones​, in which decomposers try to 
decompose the algae after it has used up all of the 
nitrogen and phosphorus, ​but require Oxygen​ to do so, 
taking it out of the water​, thereby killing most of the other 
living organisms in that area that require oxygen. 
● Important ​Natural Pollutants 
○ Cyanide​ (used in mining operations for ore extraction, leading 
to hazardous waste that never really goes away) 
○ Mercury​ (​Super­toxic​, naturally occurring metal found in coal 
among other places, and doesn’t do anything while 
underground in coal seams, ​but​ when that coal is burned to 
make electricity­ it’s ​released into the air​. It then falls onto the 
land, ​making its way to groundwater​, and ​eventually into the 
food chain​ (​specifically marine​).  
○ Sulfur Dioxide & Nitrogen Dioxide​ (Naturally sourced from 
volcanic eruptions​ and the waste of some algae and bacteria) 
but​ we release ​millions of tons​ of this stuff every year ​by 
burning fossil fuels​. When they react with compounds in the 
atmosphere, they turn into ​sulfuric acid​ and ​nitric acid​, 
returning to the surface as acid rain. 
● Important ​Synthetic Chemicals 
○ Endocrine Disruptors (EDC)​­ put in ​pharmaceuticals, 
pesticides and plastics​. I.E. ​BPA​, which is found in plastics 
and leach into our drinks. When they are excreted back into 
the environment, typically in waterways in high concentrations, 
animals end up absorbing them​.  
■ These alter an animal’s ​Endocrine (hormone) system​, 
and have led to ​male fish with female reproductive tracts, 
or testes that make eggs.  
■ Unknown effects on humans​ thus far, but research is 
progressing.  
 
Conservation and Restoration Ecology 
 
● Conservation Biology  
○ Involves ​measuring the biodiversity​ of an ecosystem and 
determining how to protect it.  
● Restoration Ecology  
○ The science of ​restoring broken ecosystems​. For example 
taking an interrupted, polluted river, and turning it into a 
functioning ecosystem again.  
○ To fix something that’s broken,​ you have to understand what 
made it work to begin with​. Practicality.  
■ The glue that holds every ecosystem together is 
Biodiversity. 
■ Biodiversity can mean many different things, though. It’s 
generally referring to ​species diversity​.  
■ In addition to species diversity, ecologists look at 
genetic​ diversity​ ​within​ a species as a whole and 
between populations. 
○ Genetic Diversity​ is important because it ​allows a species to 
adapt​ ​to new situations and disturbances like ​disease and 
climate change​.  
○ Ecosystem Diversity​ is the variety of different ecosystems 
within an area.  
■ A large forest, for example, can host several different 
ecosystems, like ​wetland, alpine, and aquatic​.  
 
○ Small Population Conservation​ focuses on identifying 
species and populations that are miniscule, and attempts to 
increase their numbers and genetic diversity​.  
■ When a population is ​small ​and​ has low biodiversity​, its 
very probable that it will soon die out, so when a 
population is suffering from ​inbreeding​ or ​genetic drift 
(​a shift in it’s overall genetic makeup​), this leads to even 
less diversity­>lower natality rates­>higher mortality 
rates­>even smaller population​. 
● This is known as an ​Extinction Vortex 
■ So how small is too small? Ecologists figure this out by 
calculating whats called the​ ​Minimum Viable 
Population​, which is the ​smallest size​ at which a 
population can ​survive and sustain itself​.  
■ To calculate this, you need to find out a ​species real 
breeding population​­ and then you figure out everything 
you can about that species life history:  
● How long they live 
● Who gets to breed the most 
● How often they can create offspring,​ etc.. 
 
 
 
 
 
○ Declining Population Conservation​ focuses on populations 
whose numbers are in decline ​no matter how large the original 
population was.  
■ First one must determine whether the population is 
actually declining 
■ Then you have to determine ​how large the population 
historically was​ and what its ​requirements were 
■ Finally, you must determine ​what is causing the decline 
and figure out how to address it 
 
 
○ Of course, we can’t really bring an ecosystem exactly back to 
the way it used to be, but through these sciences, we can get 
rid of the problems they are facing and recreate some of the 
elements that the ecosystem needs to function properly.  
■ Structural Restoration​ is the ​removal and cleanup​ of 
whatever ​human impact​ was causing the problem, and 
the ​rebuilding of the historical natural structure​. 
■ Bioremediation​ recruits organisms​ temporarily ​to help 
remove toxins​, like bacteria that eat wastes or plants that 
leach out metals from tainted soils.  
■ Biological Augmentation​ is a somewhat more 
‘invasive’​ method of restoration in which rather than 
removing harmful substances, ​organisms are added to 
the ecosystem to restore materials that are gone​.  
● i.e. plants that help fix nitrogen like beans, acacia 
trees and lupine are often used to replenish 
nitrogen in soils that have been damaged by things 
like mining and over­farming.  
● Problems can lead to introduction of an ​invasive 
species 
○ i.e. 1930’s Australia introduction of ​cane 
toads​ to ​control beetles​. Not only are they 
toxic, but they’re everywhere now, and 
poison native species like dingos that try to 
eat them.  
■ Thus, its just easier to ​Protect Ecosystems​ rather than 
trying to fix them.  
 
Sources and Citations 
 
1. Crash Course Ecology 
a. Crash Course Ecology​. Hank Green. Crash Course Ecology 
Series, 2012­2013. Web. 10 Feb. 2015. 
<​https://www.youtube.com/watch?v=sjE­Pkjp3u4&index=1&list
=PL8dPuuaLjXtNdTKZkV_GiIYXpV9w4WxbX​>  
 

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