1. The study investigated antibiotic resistance and the presence of the blaCTX-M-15 gene in Enterobacter species isolated from hospitals in Tehran, Iran between 2012-2013.
2. It found high rates of resistance to common antibiotics like Augmentin and high frequencies of the blaCTX-M-15 gene (11.8% of isolates).
3. The blaCTX-M-15 gene was found to be located on conjugative plasmids in one Enterobacter isolate, demonstrating its potential for horizontal transfer between bacteria.
Emergence of ESBL worldwide has become a threat to successful treatment of noocomial infections. This deals with detection and treatment of ESBL infetions.
Epidemiological marker (serotyping and bacteriocin typing)Santosh Kumar Yadav
This document discusses various epidemiological marker typing methods used to differentiate bacterial strains, including serotyping, bacteriocin typing, and colicin typing. Serotyping is based on antigenic differences expressed on bacterial cell surfaces and has good reproducibility but poor discriminatory power. Bacteriocin typing examines bacteriocin production and susceptibility patterns to distinguish strains. It has fair reproducibility and discriminatory power but some strains are non-typeable. Colicin typing specifically examines colicin production in E. coli strains using a spot culture method with indicator strains. These typing methods can help epidemiological studies and hospital infection control.
This document summarizes a study that detected metallo-β-lactamase (MBL) genes in clinical isolates of Pseudomonas aeruginosa. The study isolated 98 strains of P. aeruginosa from burn patients, of which 47.7% were found to contain the VIM MBL gene and 13.6% the NDM-1 gene. Isolates containing these genes showed high resistance to imipenem, with VIM producers being 80.9% resistant and NDM-1 producers 100% resistant. The emergence of NDM-1 producing P. aeruginosa is particularly concerning as it implies the increased spread of carbapenem resistance among clinically important pathogens.
Serological tests play an important role in the diagnosis of invasive fungal infections. Key serological tests discussed in the document include agglutination, immunodiffusion, complement fixation, enzyme-linked immunosorbent assay (ELISA), and lateral flow assays. ELISA tests have advantages like rapidity and are commonly used to detect fungal antigens or antibodies associated with diseases like cryptococcosis, aspergillosis, histoplasmosis, and candidiasis. The galactomannan ELISA assay detects a polysaccharide antigen released by Aspergillus and is useful for diagnosing invasive aspergillosis.
This document discusses the laboratory diagnosis of bacterial infections through various methods. It involves specimen collection, direct detection techniques like microscopy and antigen detection, culture, identification, antimicrobial susceptibility testing, serology and molecular methods. Specimen collection depends on the type of infection and specimens include blood, stool, CSF, tissues etc. Direct detection is done through staining techniques like gram stain, acid-fast stain and antigen detection. Culture identification involves isolating bacteria on media and biochemical tests. Antimicrobial susceptibility testing determines effective antibiotic treatment. Together, these laboratory methods aid in diagnosis, treatment and control of bacterial infections.
The viral neutralization test is a serological method that detects the presence of viral neutralizing antibodies. It involves mixing dilutions of antibodies with a standardized amount of virus, incubating them, and observing for cytopathic effects in cell cultures. If the antibodies neutralize the virus, no cytopathic effects will be observed as the cells remain intact. While the viral neutralization test is highly sensitive and specific, it is also slow, intensive, and requires skilled technicians. It remains the gold standard method for diagnosing viral infections in the laboratory by comparing other test methods to it.
1. The study investigated antibiotic resistance and the presence of the blaCTX-M-15 gene in Enterobacter species isolated from hospitals in Tehran, Iran between 2012-2013.
2. It found high rates of resistance to common antibiotics like Augmentin and high frequencies of the blaCTX-M-15 gene (11.8% of isolates).
3. The blaCTX-M-15 gene was found to be located on conjugative plasmids in one Enterobacter isolate, demonstrating its potential for horizontal transfer between bacteria.
Emergence of ESBL worldwide has become a threat to successful treatment of noocomial infections. This deals with detection and treatment of ESBL infetions.
Epidemiological marker (serotyping and bacteriocin typing)Santosh Kumar Yadav
This document discusses various epidemiological marker typing methods used to differentiate bacterial strains, including serotyping, bacteriocin typing, and colicin typing. Serotyping is based on antigenic differences expressed on bacterial cell surfaces and has good reproducibility but poor discriminatory power. Bacteriocin typing examines bacteriocin production and susceptibility patterns to distinguish strains. It has fair reproducibility and discriminatory power but some strains are non-typeable. Colicin typing specifically examines colicin production in E. coli strains using a spot culture method with indicator strains. These typing methods can help epidemiological studies and hospital infection control.
This document summarizes a study that detected metallo-β-lactamase (MBL) genes in clinical isolates of Pseudomonas aeruginosa. The study isolated 98 strains of P. aeruginosa from burn patients, of which 47.7% were found to contain the VIM MBL gene and 13.6% the NDM-1 gene. Isolates containing these genes showed high resistance to imipenem, with VIM producers being 80.9% resistant and NDM-1 producers 100% resistant. The emergence of NDM-1 producing P. aeruginosa is particularly concerning as it implies the increased spread of carbapenem resistance among clinically important pathogens.
Serological tests play an important role in the diagnosis of invasive fungal infections. Key serological tests discussed in the document include agglutination, immunodiffusion, complement fixation, enzyme-linked immunosorbent assay (ELISA), and lateral flow assays. ELISA tests have advantages like rapidity and are commonly used to detect fungal antigens or antibodies associated with diseases like cryptococcosis, aspergillosis, histoplasmosis, and candidiasis. The galactomannan ELISA assay detects a polysaccharide antigen released by Aspergillus and is useful for diagnosing invasive aspergillosis.
This document discusses the laboratory diagnosis of bacterial infections through various methods. It involves specimen collection, direct detection techniques like microscopy and antigen detection, culture, identification, antimicrobial susceptibility testing, serology and molecular methods. Specimen collection depends on the type of infection and specimens include blood, stool, CSF, tissues etc. Direct detection is done through staining techniques like gram stain, acid-fast stain and antigen detection. Culture identification involves isolating bacteria on media and biochemical tests. Antimicrobial susceptibility testing determines effective antibiotic treatment. Together, these laboratory methods aid in diagnosis, treatment and control of bacterial infections.
The viral neutralization test is a serological method that detects the presence of viral neutralizing antibodies. It involves mixing dilutions of antibodies with a standardized amount of virus, incubating them, and observing for cytopathic effects in cell cultures. If the antibodies neutralize the virus, no cytopathic effects will be observed as the cells remain intact. While the viral neutralization test is highly sensitive and specific, it is also slow, intensive, and requires skilled technicians. It remains the gold standard method for diagnosing viral infections in the laboratory by comparing other test methods to it.
Polyclonal antibodies were generated against 10 human protein targets by immunizing the same recombinant antigen in separate rabbits. Epitope mapping showed that while the antibodies often recognized similar epitopes, they did not have an identical pattern and some unique epitopes were observed for individual rabbits. Fractionation of one polyclonal antibody based on peptide affinity revealed most but not all epitopes were shared between immunizations. This suggests polyclonal antibodies from repeated immunization have related but non-identical epitope profiles.
This document discusses various laboratory diagnosis methods for infectious diseases, including both conventional and modern techniques. [1] Microscopic examination, culture isolation, and serological/immunological identification were described as conventional methods. [2] Limitations of conventional methods led to development of molecular biology techniques like PCR, DNA probes, and microarray technology which provide early and sensitive diagnosis. [3] Specific techniques like ELISA, RIA, immunoblotting, and nucleic acid-based methods like PCR, RFLP, and microarray analysis are now commonly used for laboratory diagnosis of infectious diseases.
Serological test for virus identificationPlock Ghosh
This presentation consist of detailed study of serological method of virus identification. Basically ELISA is vastly used for virus detection. Western blot method is used for HIV identification.
Techniques for identification of bacterial and viral pathogensAmbica Bora
This document discusses various techniques for identifying bacterial and viral pathogens. It covers microscopic, histological, microbiological, immunological, and molecular techniques.
Microscopic techniques include basic staining methods to identify organisms under a microscope. Histological techniques examine stained tissue sections to detect pathogens. Microbiological techniques involve culturing samples and conducting biochemical tests on isolates.
Immunological techniques like ELISA, agglutination, and immunofluorescence use antigen-antibody reactions for detection. Molecular techniques like PCR, multiplex PCR, and DNA microarrays allow sensitive detection and differentiation of pathogens through nucleic acid analysis.
After detection, antibiotics are usually administered but alternative remedies like photoinactivation of pathogens using blue light and bacteri
This experiment aimed to generate Escherichia coli resistant to bacteriophage T1 and classify mutations. Plaque assays to isolate resistant mutants were unsuccessful, yielding no plaques. Regrowth of mutants from previous research was successful, as was MRVP testing to confirm the regrown cultures were E. coli. Genomic DNA was isolated from positive mutant cultures and will undergo PCR amplification and analysis. In summary, the experiment generated no new resistant mutants but validated previous work characterizing E. coli mutations that confer resistance to bacteriophage infection.
This document provides information about various antimicrobial susceptibility testing methods, including broth dilution, agar dilution, disc diffusion (Kirby-Bauer), and Etest. It discusses preparing bacterial inoculums, selecting antimicrobials, reading results, and factors that can influence zone sizes. Minimum inhibitory concentrations (MICs) and minimum bactericidal concentrations (MBCs) are determined. Chromogenic media can be used to rapidly identify organisms producing extended-spectrum beta-lactamases or vancomycin-resistant enterococci.
Molecular detection of extended spectrum beta- lactamases in clinical isolate...Alexander Decker
This document summarizes a study that investigated the occurrence of extended-spectrum beta-lactamases (ESBLs) in clinical isolates of Acinetobacter baumannii in Najaf, Iraq. 12 A. baumannii isolates were recovered from 770 clinical samples. All isolates were resistant to ampicillin and amoxicillin. Various tests found that 8-10 isolates were ESBL producers. PCR testing identified genes for SHV (in 3 isolates) and TEM (in 1 isolate) beta-lactamase types, but not VEB type. Isolates containing SHV and TEM genes also showed multidrug resistance. The study concludes there is dissemination of ESBL-producing
Ps graminis as biocontrol agent of fire blightJorge Gonzalez
☻ Strain 49M of Pseudomonas graminis significantly protected apple blossoms and shoots against fire blight through high efficacy when applied at a concentration of 108 cfu/ml (89.0-82.8%).
☻ Survival of strain 49M bacteria on apple blossoms was high, with 10 days detecting levels of 2.0x104—6.7 x 106 cfu/blossom after introduction at 108 cfu/ml by spraying.
☻ Strain 49M produced siderophores and biofilm but not N-acyl homoserine lactones. It contained the regulatory gen gacA but not genes for selected antibiotics; and inhibited the fire blight pathogen
This document discusses techniques for serologically detecting plant viruses. It begins by defining serology and its use in agriculture for detecting pathogens with variable or latent symptoms. It then describes the basics of antigen-antibody reactions and the types of antigens, antibodies, and reactions. The rest of the document focuses on specific serological tests used in plant virology, including liquid phase tests like precipitation, agglutination, and immunodiffusion assays as well as solid phase tests like ELISA, SDS-PAGE, ISEM, western blotting, and dot/tissue immunobinding assays. These tests allow detection of plant viruses through the reaction of viral coat proteins or antigens with specific antibodies.
This study characterized 4 ESBL-producing E. coli isolates from urology patients in Rawalpindi, Pakistan. The isolates were tested for antibiotic susceptibility and further analyzed at a reference laboratory in London. All 4 isolates were found to have CTX-M ESBL phenotypes based on their higher MIC for cefotaxime compared to ceftazidime. This suggests the emergence of CTX-M ESBLs in Pakistan is concerning and warrants further epidemiological and genetic studies to understand the spread of these resistant enzymes.
Western blotting is a technique used to detect specific proteins in a complex mixture. It relies on the binding between a target protein and a probe, such as an antibody, to identify the target protein. The process involves separating proteins via SDS-PAGE gel electrophoresis, transferring them to a membrane, and using antibodies to detect the target protein band on the membrane. Western blotting is used to confirm diseases like HIV, mad cow disease, and some cases of Lyme disease.
This document discusses various diagnostic techniques for viral animal diseases. It describes direct detection methods like electron microscopy, histopathology, and fluorescent antibody techniques. It also covers indirect detection methods like ELISA, immunochromatography, latex agglutination, and viral antibody detection techniques like complement fixation, haemagglutination inhibition, and virus neutralization tests. Emerging techniques discussed include PCR, microarrays, and nanobiosensor-based diagnostics.
Immunohistochemistry (IHC) is a laboratory technique that uses antibodies to detect antigens in tissue samples. The document provides an overview of IHC, including its history, principles, steps, methods, applications and troubleshooting. Key developments include the indirect method in 1942 and enzyme conjugation in 1966. The main steps are tissue collection, fixation, sectioning, antigen retrieval, staining, detection and counterstaining. IHC is useful for cancer prognosis, infectious disease diagnosis and research applications by determining the presence or absence of cell markers.
Huzaifa umar (biomedical science and instrumentation presentation)Huzaifa Umar
This document outlines applications of biomaterials and protein immunostaining techniques. It defines biomaterials as materials used in medical applications that contact tissues or fluids without harm. Biomaterials have a wide range of uses including orthopedic devices, drug delivery, and tissue replacement. Protein immunostaining methods like immunohistochemistry and flow cytometry use antibodies to detect specific proteins in samples and identify cell types. Immunohistochemistry detects protein markers in tissue sections through enzyme-conjugated antibodies while flow cytometry analyzes individual cells suspended in fluid based on physical and protein characteristics. Both techniques provide methods for disease diagnosis, identifying cell states, and studying cellular events.
Abstract
Objective(s):
The development of reliable and ecofriendly process for the synthesis of nano-metals is an important aspect in the field of nanotechnology. Nano-metals are a special group of materials with broad area of applications.
Materials and Methods:
In this study, extracellular synthesis of silver nanoparticles (SNPs) performed by use of the gram positive soil Streptomycetes. Streptomycetes isolated from rice fields of Guilan Province, Iran (5 isolates). Initial characterization of SNPs was performed by visual change color. To determine the bacterium taxonomical identity, its colonies characterized morphologically by use of scanning electron microscope. The PCR molecular analysis of active isolate represented its identity partially. In this regard, 16S rDNA of isolate G was amplified using universal bacterial primers FD1 and RP2. The PCR products were purified and sequenced. Sequence analysis of 16S rDNA was then conducted using NCBI GenBank database using BLAST. Also SNPs were characterized by, transmission electron microscopy (TEM) and X-ray diffraction spectroscopy (XRD).
Results:
From all 5 collected Streptomyces somaliensis isolates, isolate G showed highest extracellular synthesis of SNPs via in vitro. SNPs were formed immediately by the addition of (AgNO3) solution (1 mM). UV-visible spectrophotometry for measuring surface plasmon resonance showed a single absorption peak at 450 nm, which confirmed the presence of SNPs. TEM revealed the extracellular formation of spherical silver nanoparticles in the size range of 5-35 nm.
Conclusions:
The biological approach for the synthesis of metal nanoparticles offers an environmentally benign alternative to the traditional chemical and physical synthesis methods. So, a simple, environmentally friendly and cost-effective method has been developed to synthesize AgNPs using Streptomycetes.
Genotyping methods of nosocomial infections pathogenimprovemed
Nosocomial infections afflict approximately 2 million patients in the United States each year, resulting in 88,000 deaths and $4.5 billion in excess healthcare costs. Bacterial agents such as MRSA, VRE, and multidrug-resistant Pseudomonas aeruginosa and Acinetobacter baumannii are major causes. Understanding the distribution and relatedness of pathogens is important for epidemiology and infection control. Genotyping methods such as pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST) are now commonly used to determine if epidemiologically related isolates are genetically related and originated from the same strain. The integration of genotyping into infection control programs has been shown to reduce nosocomial
The document provides information about midterm exams and extra office hours for a class. It announces that the first midterm exam will be on Thursday, February 15 at 6pm in room 155 Dwinelle, and that review sessions will be held during the regular class time that day. It also notes that the professor will not have office hours on February 13.
This document summarizes rapid detection methods for foodborne pathogen bacteria. It discusses how foodborne illnesses are a major public health problem and rapid detection of pathogens is needed. Several detection methods are outlined, including traditional culturing as well as newer techniques like PCR, real-time PCR, LAMP, and immunoassays. LAMP is highlighted as a new method that can rapidly detect pathogens under isothermal conditions. The document concludes that LAMP is a promising technique for pathogen detection due to its speed, simplicity and accuracy.
Viruses. Methods of Indication & Identification. Diagnosis of Viral diseasesEneutron
This document discusses methods for indicating, identifying, and diagnosing viral diseases in the laboratory. It describes several methods for indicating viruses including observing cytopathic effects in cell cultures, hemadsorption, hemagglutination, metabolic inhibition assays, and plaque or pock formation. Identification methods covered include serological techniques like neutralization testing, complement fixation testing, hemagglutination inhibition, and enzyme-linked immunosorbent assays (ELISA). Molecular identification using PCR to detect viral nucleic acids is also mentioned. The document outlines the main stages of viral diagnosis as detection of viruses in samples, viral cultivation and identification, and serological diagnostics including various serological tests.
This study investigated methods for detecting biofilm formation in Staphylococcal isolates from neonatal infections. Staphylococci were the most common cause of infection. Three phenotypic methods (tube method, microtiter plate method, Congo red agar) and a genotypic PCR method were used to detect biofilm formation. The tube method had the highest sensitivity and specificity compared to the PCR method. Strong biofilm formers showed higher resistance to vancomycin and meropenem. Both genotypic and phenotypic methods should be used to fully identify biofilm formation in Staphylococci.
Polyclonal antibodies were generated against 10 human protein targets by immunizing the same recombinant antigen in separate rabbits. Epitope mapping showed that while the antibodies often recognized similar epitopes, they did not have an identical pattern and some unique epitopes were observed for individual rabbits. Fractionation of one polyclonal antibody based on peptide affinity revealed most but not all epitopes were shared between immunizations. This suggests polyclonal antibodies from repeated immunization have related but non-identical epitope profiles.
This document discusses various laboratory diagnosis methods for infectious diseases, including both conventional and modern techniques. [1] Microscopic examination, culture isolation, and serological/immunological identification were described as conventional methods. [2] Limitations of conventional methods led to development of molecular biology techniques like PCR, DNA probes, and microarray technology which provide early and sensitive diagnosis. [3] Specific techniques like ELISA, RIA, immunoblotting, and nucleic acid-based methods like PCR, RFLP, and microarray analysis are now commonly used for laboratory diagnosis of infectious diseases.
Serological test for virus identificationPlock Ghosh
This presentation consist of detailed study of serological method of virus identification. Basically ELISA is vastly used for virus detection. Western blot method is used for HIV identification.
Techniques for identification of bacterial and viral pathogensAmbica Bora
This document discusses various techniques for identifying bacterial and viral pathogens. It covers microscopic, histological, microbiological, immunological, and molecular techniques.
Microscopic techniques include basic staining methods to identify organisms under a microscope. Histological techniques examine stained tissue sections to detect pathogens. Microbiological techniques involve culturing samples and conducting biochemical tests on isolates.
Immunological techniques like ELISA, agglutination, and immunofluorescence use antigen-antibody reactions for detection. Molecular techniques like PCR, multiplex PCR, and DNA microarrays allow sensitive detection and differentiation of pathogens through nucleic acid analysis.
After detection, antibiotics are usually administered but alternative remedies like photoinactivation of pathogens using blue light and bacteri
This experiment aimed to generate Escherichia coli resistant to bacteriophage T1 and classify mutations. Plaque assays to isolate resistant mutants were unsuccessful, yielding no plaques. Regrowth of mutants from previous research was successful, as was MRVP testing to confirm the regrown cultures were E. coli. Genomic DNA was isolated from positive mutant cultures and will undergo PCR amplification and analysis. In summary, the experiment generated no new resistant mutants but validated previous work characterizing E. coli mutations that confer resistance to bacteriophage infection.
This document provides information about various antimicrobial susceptibility testing methods, including broth dilution, agar dilution, disc diffusion (Kirby-Bauer), and Etest. It discusses preparing bacterial inoculums, selecting antimicrobials, reading results, and factors that can influence zone sizes. Minimum inhibitory concentrations (MICs) and minimum bactericidal concentrations (MBCs) are determined. Chromogenic media can be used to rapidly identify organisms producing extended-spectrum beta-lactamases or vancomycin-resistant enterococci.
Molecular detection of extended spectrum beta- lactamases in clinical isolate...Alexander Decker
This document summarizes a study that investigated the occurrence of extended-spectrum beta-lactamases (ESBLs) in clinical isolates of Acinetobacter baumannii in Najaf, Iraq. 12 A. baumannii isolates were recovered from 770 clinical samples. All isolates were resistant to ampicillin and amoxicillin. Various tests found that 8-10 isolates were ESBL producers. PCR testing identified genes for SHV (in 3 isolates) and TEM (in 1 isolate) beta-lactamase types, but not VEB type. Isolates containing SHV and TEM genes also showed multidrug resistance. The study concludes there is dissemination of ESBL-producing
Ps graminis as biocontrol agent of fire blightJorge Gonzalez
☻ Strain 49M of Pseudomonas graminis significantly protected apple blossoms and shoots against fire blight through high efficacy when applied at a concentration of 108 cfu/ml (89.0-82.8%).
☻ Survival of strain 49M bacteria on apple blossoms was high, with 10 days detecting levels of 2.0x104—6.7 x 106 cfu/blossom after introduction at 108 cfu/ml by spraying.
☻ Strain 49M produced siderophores and biofilm but not N-acyl homoserine lactones. It contained the regulatory gen gacA but not genes for selected antibiotics; and inhibited the fire blight pathogen
This document discusses techniques for serologically detecting plant viruses. It begins by defining serology and its use in agriculture for detecting pathogens with variable or latent symptoms. It then describes the basics of antigen-antibody reactions and the types of antigens, antibodies, and reactions. The rest of the document focuses on specific serological tests used in plant virology, including liquid phase tests like precipitation, agglutination, and immunodiffusion assays as well as solid phase tests like ELISA, SDS-PAGE, ISEM, western blotting, and dot/tissue immunobinding assays. These tests allow detection of plant viruses through the reaction of viral coat proteins or antigens with specific antibodies.
This study characterized 4 ESBL-producing E. coli isolates from urology patients in Rawalpindi, Pakistan. The isolates were tested for antibiotic susceptibility and further analyzed at a reference laboratory in London. All 4 isolates were found to have CTX-M ESBL phenotypes based on their higher MIC for cefotaxime compared to ceftazidime. This suggests the emergence of CTX-M ESBLs in Pakistan is concerning and warrants further epidemiological and genetic studies to understand the spread of these resistant enzymes.
Western blotting is a technique used to detect specific proteins in a complex mixture. It relies on the binding between a target protein and a probe, such as an antibody, to identify the target protein. The process involves separating proteins via SDS-PAGE gel electrophoresis, transferring them to a membrane, and using antibodies to detect the target protein band on the membrane. Western blotting is used to confirm diseases like HIV, mad cow disease, and some cases of Lyme disease.
This document discusses various diagnostic techniques for viral animal diseases. It describes direct detection methods like electron microscopy, histopathology, and fluorescent antibody techniques. It also covers indirect detection methods like ELISA, immunochromatography, latex agglutination, and viral antibody detection techniques like complement fixation, haemagglutination inhibition, and virus neutralization tests. Emerging techniques discussed include PCR, microarrays, and nanobiosensor-based diagnostics.
Immunohistochemistry (IHC) is a laboratory technique that uses antibodies to detect antigens in tissue samples. The document provides an overview of IHC, including its history, principles, steps, methods, applications and troubleshooting. Key developments include the indirect method in 1942 and enzyme conjugation in 1966. The main steps are tissue collection, fixation, sectioning, antigen retrieval, staining, detection and counterstaining. IHC is useful for cancer prognosis, infectious disease diagnosis and research applications by determining the presence or absence of cell markers.
Huzaifa umar (biomedical science and instrumentation presentation)Huzaifa Umar
This document outlines applications of biomaterials and protein immunostaining techniques. It defines biomaterials as materials used in medical applications that contact tissues or fluids without harm. Biomaterials have a wide range of uses including orthopedic devices, drug delivery, and tissue replacement. Protein immunostaining methods like immunohistochemistry and flow cytometry use antibodies to detect specific proteins in samples and identify cell types. Immunohistochemistry detects protein markers in tissue sections through enzyme-conjugated antibodies while flow cytometry analyzes individual cells suspended in fluid based on physical and protein characteristics. Both techniques provide methods for disease diagnosis, identifying cell states, and studying cellular events.
Abstract
Objective(s):
The development of reliable and ecofriendly process for the synthesis of nano-metals is an important aspect in the field of nanotechnology. Nano-metals are a special group of materials with broad area of applications.
Materials and Methods:
In this study, extracellular synthesis of silver nanoparticles (SNPs) performed by use of the gram positive soil Streptomycetes. Streptomycetes isolated from rice fields of Guilan Province, Iran (5 isolates). Initial characterization of SNPs was performed by visual change color. To determine the bacterium taxonomical identity, its colonies characterized morphologically by use of scanning electron microscope. The PCR molecular analysis of active isolate represented its identity partially. In this regard, 16S rDNA of isolate G was amplified using universal bacterial primers FD1 and RP2. The PCR products were purified and sequenced. Sequence analysis of 16S rDNA was then conducted using NCBI GenBank database using BLAST. Also SNPs were characterized by, transmission electron microscopy (TEM) and X-ray diffraction spectroscopy (XRD).
Results:
From all 5 collected Streptomyces somaliensis isolates, isolate G showed highest extracellular synthesis of SNPs via in vitro. SNPs were formed immediately by the addition of (AgNO3) solution (1 mM). UV-visible spectrophotometry for measuring surface plasmon resonance showed a single absorption peak at 450 nm, which confirmed the presence of SNPs. TEM revealed the extracellular formation of spherical silver nanoparticles in the size range of 5-35 nm.
Conclusions:
The biological approach for the synthesis of metal nanoparticles offers an environmentally benign alternative to the traditional chemical and physical synthesis methods. So, a simple, environmentally friendly and cost-effective method has been developed to synthesize AgNPs using Streptomycetes.
Genotyping methods of nosocomial infections pathogenimprovemed
Nosocomial infections afflict approximately 2 million patients in the United States each year, resulting in 88,000 deaths and $4.5 billion in excess healthcare costs. Bacterial agents such as MRSA, VRE, and multidrug-resistant Pseudomonas aeruginosa and Acinetobacter baumannii are major causes. Understanding the distribution and relatedness of pathogens is important for epidemiology and infection control. Genotyping methods such as pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST) are now commonly used to determine if epidemiologically related isolates are genetically related and originated from the same strain. The integration of genotyping into infection control programs has been shown to reduce nosocomial
The document provides information about midterm exams and extra office hours for a class. It announces that the first midterm exam will be on Thursday, February 15 at 6pm in room 155 Dwinelle, and that review sessions will be held during the regular class time that day. It also notes that the professor will not have office hours on February 13.
This document summarizes rapid detection methods for foodborne pathogen bacteria. It discusses how foodborne illnesses are a major public health problem and rapid detection of pathogens is needed. Several detection methods are outlined, including traditional culturing as well as newer techniques like PCR, real-time PCR, LAMP, and immunoassays. LAMP is highlighted as a new method that can rapidly detect pathogens under isothermal conditions. The document concludes that LAMP is a promising technique for pathogen detection due to its speed, simplicity and accuracy.
Similar to An immunohistochemical method differentiates cryptococcus neoformans varieties and serotypes in formalin fixed and paraffin-embedded tissues.
Viruses. Methods of Indication & Identification. Diagnosis of Viral diseasesEneutron
This document discusses methods for indicating, identifying, and diagnosing viral diseases in the laboratory. It describes several methods for indicating viruses including observing cytopathic effects in cell cultures, hemadsorption, hemagglutination, metabolic inhibition assays, and plaque or pock formation. Identification methods covered include serological techniques like neutralization testing, complement fixation testing, hemagglutination inhibition, and enzyme-linked immunosorbent assays (ELISA). Molecular identification using PCR to detect viral nucleic acids is also mentioned. The document outlines the main stages of viral diagnosis as detection of viruses in samples, viral cultivation and identification, and serological diagnostics including various serological tests.
This study investigated methods for detecting biofilm formation in Staphylococcal isolates from neonatal infections. Staphylococci were the most common cause of infection. Three phenotypic methods (tube method, microtiter plate method, Congo red agar) and a genotypic PCR method were used to detect biofilm formation. The tube method had the highest sensitivity and specificity compared to the PCR method. Strong biofilm formers showed higher resistance to vancomycin and meropenem. Both genotypic and phenotypic methods should be used to fully identify biofilm formation in Staphylococci.
This document provides information on various laboratory techniques for the diagnosis of fungal infections. It discusses direct microscopic examination of clinical specimens, fungal culture techniques, serological and histological diagnosis methods, and newer non-cultural diagnostic methods like antigen detection, molecular diagnosis using DNA probes, and the use of Woods light. The key techniques covered are potassium hydroxide preparation, calcofluor white staining, fungal culture media and incubation, serological tests for fungal antibodies and antigens, histological staining methods, detection of fungal cell wall components like glucans and galactomannans, and molecular methods using DNA probes.
1. Proper specimen collection is essential for accurate laboratory diagnosis of bacterial infections, as the wrong sample, delay in transport, or contamination can limit test usefulness.
2. Common examination methods for diagnosing bacterial infections include morphological analysis, isolation and culture of pathogens, biochemical reactions, antibiotic susceptibility testing, and detection of antigens or nucleic acids.
3. Antibiotic susceptibility testing determines the sensitivity of isolated bacteria to different antibiotics, which helps clinicians select the proper treatment. Methods include minimum inhibitory concentration and disk diffusion tests.
Hesca-2 is a monoclonal antibody that was generated against the human embryonic stem cell line BG-01v. Hesca-2 binds with high affinity to a glycan epitope containing the disaccharide Galb1-3GlcNAc, which is commonly found on the surface of undifferentiated hESCs and certain carcinomas. Hesca-2 staining shows this epitope is present on some adult human tissues as well as several human ovarian cancer cell lines, and Hesca-2 is cytotoxic to these cancer cell lines. Immunohistochemistry also showed staining of tissue samples of common human tumor types including ovarian, breast, colon, and esophageal cancers.
Genotyping and subgenotyping of Trichophyton rubrum isolated from dermatophyt...iosrjce
IOSR Journal of Pharmacy and Biological Sciences(IOSR-JPBS) is a double blind peer reviewed International Journal that provides rapid publication (within a month) of articles in all areas of Pharmacy and Biological Science. The journal welcomes publications of high quality papers on theoretical developments and practical applications in Pharmacy and Biological Science. Original research papers, state-of-the-art reviews, and high quality technical notes are invited for publications.
The study aimed to test the specificity of two antibodies (033 and 1-9E10) for binding the c-myc protein. Human colon carcinoma cells were extracted to obtain cytosolic, nuclear, and nuclear pellet extracts. The 033 antibody bound c-myc in the cytosolic extract at approximately 110 kDa, but the 9E10 antibody did not bind c-myc. This suggests c-myc is not restricted to the nucleus and more research is needed to fully understand c-myc and its role in cancer.
This document provides an overview of immunohistochemistry (IHC), including its definition, principles, procedures, application and markers. IHC is described as using antibodies to determine the distribution of antigens in tissues for health and disease studies. The key steps discussed are tissue processing, antigen retrieval, antibody selection and application, detection and counterstaining. IHC is said to be useful for prognostic cancer markers, tumor classification, infection detection and research. Common markers for cancers, immune cells and tissues are also outlined.
Gene expression profiling in apoptotic mcf 7 cells infected with newcastle di...Mohamed Khalid Ali Xundhur
The document summarizes a study that examined gene expression profiling in MCF-7 breast cancer cells infected with Newcastle disease virus (NDV). The study found that NDV infection changed the expression levels of many genes involved in tumor progression, cell cycle regulation, apoptosis, and other cellular processes. Specifically, the study used a gene expression kit to measure changes in 21 genes related to these processes in MCF-7 cells infected with NDV. It found that NDV infection altered the expression of genes like PUMA, Bcl-2, ESR1, and MYBL2. The results provide insight into the gene regulation mechanisms by which NDV selectively kills cancer cells.
Gene expression profiling in apoptotic mcf 7 cells infected with newcastle di...Mohamed Khalid Ali Xundhur
1) The document analyzes gene expression profiling in MCF-7 breast cancer cells infected with Newcastle disease virus (NDV). It finds that NDV infection changes the expression level of many genes involved in tumor progression, cell cycle regulation, apoptosis, and other processes.
2) Specifically, it finds that NDV down-regulates expression of genes like estrogen receptor 1 (ESR1) and up-regulates genes like Bcl-2 binding component 3 (BBC3), both of which are involved in apoptosis.
3) Cell cycle analysis shows that 11% and 41% of MCF-7 cells underwent apoptosis at 3 and 6 hours post-infection respectively, indicating NDV induces apoptosis in the cancer cells
1. This study investigated the prevalence of integrons and antimicrobial resistance genes in 110 clinical isolates of Enterobacter species collected from hospitals in Tehran, Iran between 2012-2013.
2. The study found that 45 isolates (41%) contained integrons, with class 1 integrons being most common. Integron-positive isolates showed higher resistance to antibiotics like augmentin, trimethoprim-sulfamethoxazole, and cefoxitin.
3. Ten integron-positive isolates were found to be ESBL producers. Common resistance genes identified included blaTEM (20%), blaCTX-M-1 (15.6%), and genes encoding aminoglycoside
This document discusses microbial diagnostic tests and their applications. It begins by introducing the importance of microbial diagnostics in identifying pathogens that cause disease. It then describes various diagnostic test types including culture techniques, molecular diagnostics like PCR, immunodiagnostic tests, and biosensors. The document also discusses laboratory diagnosis of bacteria, fungi, and viruses through techniques like microscopy, culturing, serology, antigen detection, and nucleic acid detection. It emphasizes the role of diagnostic tests in facilitating appropriate treatment and antimicrobial stewardship.
This document summarizes a novel micro-emulsion technology called Phage Emulsion, Secretion, and Capture (ESCape) that can be used for the directed evolution of antibodies. The technology utilizes water-in-oil emulsions to compartmentalize individual phage clones displaying antibodies so that they can be queried against antigens individually. This allows for finer discrimination of binding kinetics compared to traditional phage display methods. The document demonstrates that the technology can distinguish antibodies with a 300-fold difference in binding affinity and can be used to select antibodies with improved thermal stability.
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An immunohistochemical method differentiates cryptococcus neoformans varieties and serotypes in formalin fixed and paraffin-embedded tissues.
1. NAME : PRISCILLA ANAK NARI
MATRIC NO : 131642
IDENTITY CARD : 930115135900
TITLE:
AN IMMUNOHISTOCHEMICAL METHOD THAT DIFFERENTIATES CRYPTOCOCCUS NEOFORMANS
VARIETIES AND SEROTYPES IN FORMALIN-FIXED PARAFFIN-EMBEDDED TISSUES
Kingdom : Fungi
Phylum : Basidimycota
subphylum : Basidimycotina
Order : Sporidiales
Family : Sporidiobolaceae
Genus : Filobasidiella (Cryptococcus)
Species : Filobasidiella neoformas (Cryptococcus neoformans)
Keywords : Cryptococcus Neoformans, Cryptocococis, Cryptococcus Neoformans var gatti, Immunohistochemical
2. INTRODUCTION
Immunohistochemistry (IHC) analysis is a method for demonstrating the presence and location of
proteins in tissue sections
Immunohistochemical detection of molecules of interest such as receptors, neurotransmitters, or
intracellular signaling molecules is an important techniques to determine the distribution of those
molecules in tissues
Obviously, single staining protocols and multiple staining protocol show similarities, but multiples staining
protocols are more complex. To avoid target cross reactivity, complex protocol may be necessary.
Differentiation of stain colors may be difficult, especially if the targets are co-localized.
Then, in many cases, the best antibody concentration and the most appropriate visualization systems to
distinguish the target and to obtain the topographic information desired are necessary.
Cryptococcosis is an important disease throughout the world and the most common systemic mycosis
affecting animals and humans in Australia
This paper describes a method that detects C. neoformans and differentiates C. n. var. neoformans and C.
n. var. gattii in formalin-fixed tissues of cryptococcosis cases by the use of immunohistochemical labelling.
The method will permit retrospective analysis of archival material with particular emphasis on comparing
and contrasting host–parasite interaction of the two varieties in disease.
3. EXPERIMENT PROCEDURE (AFTER TREATMENT)
a) Sample preparation b) Immunostainning protocol
Blocking
Incubation with the
primary antibody
Incubation with the secondary
antibody
Adding enzyme substrate (for
colometric detection)
Coverslip and
observation
Fixation
Embedding
Sectioning
Antigen retrieval
Publication Analysis
Immunostaining
Protocol
Sample
Preparation
Sample
Treatment
4. MATERIALS AND METHODS
a) Case Selection b) Animal Tissues c) Primary Antibodies
To be included in this study, a positive
histological diagnosis of cryptococcosis based
on characteristic organism morphology and a
positive microbiological diagnosis to the
varietal level were both required.
Round to oval yeast cells (2-15 µm diameter)
with variably size capsules and narrow necked
budding.
Isolated initially cultured on ‘Saboraud’s
dextrose agar’. C neoformans identified
basedon brown colour effect at 28°C and
37°C. then, unrease production and presence
of a capsule.
Isolated send to the Australia National
References Laboratory in Medical Mycology
where species identify was confirmed using
the API ATB 32C identification system
(Biomerieux, Mercy L’Etoile, Frence)
Variety determined using L-Canavanine glycine
bromothymol blue (CGB) agar.
Tissue were obtained from animals with
naturally occurring 30/31or experimentally
produced (1/31) cryptococcosis over a B-year
period (1988-2000).
The specimen included a range of tissues
(including upper and lower respiratory tract,
skin, subcutis and brain from various animal
species (20 cats, four dogs, five koalas, one
ferret, one rat)
Tissues were process with histology routine
fixation in 10% neutral buffered formatim and
embedded in paraffin. Paraffin blocks were
stored at room temperature.
Section for histology cut at 5 µm, mounted on
glass slide and staining using haematoxylin and
eosin (H&E)
Commercially available polyclonal serotyping
antibodies
(Crypto-Check, Iatron Laboratories, Tokyo,
Japan) were utilized at varying dilutions from
1:50 through to 1:4000 (especially factors 1, 5
and 7 from the Crypto-Check system)
5. MATERIALS AND METHODS
d) Monoclonal antibodies
e) Immunohistochemical Staining Method
f) Controls
Monoclonal antibodies raised against cryptococcal capsular
antigens in previous investigations were screened for their
usefulness in immunohistochemistry. Table 2 provides details of the
monoclonal antibodies used.
Sections for
immunohistoche
mical staining
were cut at 4 µm,
mounted onto 3-
aminopropyltriet
hoxysilane
coated glass
slides, dried at
37°C and stored
at room
temperature
Before staining, sections
were deparaffinized in
xylol and rehydrated
through successive
ethanol dilutions to
water. All incubations
were carried out at
room temperature
(21°C). Thorough
washing in phosphate-
buffered saline (PBS)
was performed between
each step.
Endogenous
peroxidase activity
was quenched by
incubating
sections for 30
min in a 2%
peroxide solution
in 50:50 mix of
methanol and
PBS.
Antigen retrieval was
enhanced by boiling in
0.01 M tri-sodium
citrate for 6 min in a
microwave oven. Non-
immunological binding
of antibody was
minimized by pre-
incubating the sections
in 5% normal goat
serum in PBS in a
humified chamber for
30 min.
Secondary antibody
was applied to the
sections and allowed to
incubate for 60 min.
The secondary antibody
used was 1:100 dilution
of biotinylated goat
anti-rabbit/mouse
immunoglobulin.
Sections were counterstained
with haematoxylin, dehydrated
through graded alcohols to
100% ethanol and xylol and
then cover-slipped (Depex
Mounting Medium Gurr, BDH
Chemicals, Poole, UK). Sections
were examined for evidence of
specific antibody binding.
Duplicates
for each
antibody
tested and
two negative
controls
The first negative control had
the primary antibody
substituted by normal mouse
immunoglobulin matched for
isotype and subclass to test for
untargeted species-specific
binding.
Second negative control
had the primary antibody
omitted to test for non-
immunological binding.
Sections acted as their own
positive controls.
The whole process was
repeated at different
times for many of the
specimens, to ensure
consistency of results over
the time course of this
investigation.
Normal tissues from animals
with no histopathological
evidence of cryptococcosis from
with other fungal infections
were also run as negative
controls against the test
antibodies.
6. RESULTS
Polyclonal antibodies used were neither consistent nor accurate in determining serotype and it was
concluded that these antibodies were unsuitable for immunohistochemical labelling.
Five mAbs evaluated, 471 and 302 were found to be the most useful, both providing consistent and
specific staining of a specific range of cryptococcal capsular antigen types.
MAb 471 labelled C. neoformans capsular antigen of all serotypes and mAb 302 labelled C. n. var.
neoformans (serotypes A, D and AD) capsules.
These antibodies permitted inferential identifications with a high degree of congruence to the
correct varietal status of C. neoformans isolates.
MAb 12A1 labelled only cryptococcal capsular antigens, but the antigens labelled were not variety-
specific (data not shown). Therefore, this antibody was not useful for our purposes.
MAb 2D10 proved to be a general marker of C. neoformans capsule; however, mAb 471 was superior,
giving stronger capsular staining.
Positive capsular staining with the mAb 471 was considered definitive in identifying organisms in
tissue sections as C. neoformans. All cases with a positive tissue diagnosis of cryptococcosis had
demonstrable organisms whose capsules were positively labelled by mAb471.
The type of tissue in which yeast cells were located had no effect on the ability to label
cryptococcal capsular antigen.
Tissues infected with other species of fungi tested (Sporothrix schenckii, Aspergillus sp., Candida
albicans, Histoplasma capsulatum, Coccidioides immitis) did not show positive capsular labelling
with mAb 471 although a light, non-immunogenic staining of yeast and hyphal cell walls was
sometimes apparent.
7. RESULTS
Fig. 1 a, C. neoformans var.
gattii infected lung labelled
by mAb 471
Fig. 1 b, C. neoformans
var. neoformans serotype
A infected meninges
labelled by mAb 471
Fig. 1 c, C. neoformans var.
gattii infected brain
labelledby mAb 302
Fig. 1 d, C. neoformans
var.neoformans serotype
A infected meninges
labelled by mAb 302
Fig. 1 e, C. neoformans var.
neoformans infected
subcutis labelled by mAb
CRND8
Fig. 1 f, C. neoformans var.
neoformans serotype A
infected meninges labelled
by a negative antibody
control (primary antibody
omitted)
a) There is a slight degree of labelling of dispersed soluble components of cryptococcal
capsule and some uptake by host cells. Immunoperoxidase x300.
b) There is a slight degree of labelling of dispersed soluble components of cryptococcal
capsule and some uptake by host cells. Immunoperoxidase x300.
c) Absence of tissue labelling. There is a slight non-specific staining of the yeastcell wall.
Immunoperoxidase x300.
d) The strong capsular staining (arrow). There is a slight degree of labelling of dispersed
soluble components of cryptococcal capsule and some uptake by host cells.
Immunoperoxidase x300.
e) The positive labelling of cryptococcal capsule (arrow). Immunoperoxidase x300.
f) The absence of capsular staining (arrow). Immunoperoxidase x300.
mAb 471 labelled both varieties (Fig. 1a, b), labelling was more
intense in cases that were subsequently classified as C. n. var. gattii.
Positive capsular staining with mab 302 (fig. 1d) was considered
indicative of a C. N. Var. Neoformans infection whereas a negative
result indicated a C. N. Var. Gattii infection (see table 3)
A further breakdown of cases positively labelled as caused by C. n. var.
neoformans (serotypes A, D, AD) was made using the mAb CRND8 (Fig.
1e), which positively labelled C. neoformans serotype D, with negatively
staining organisms considered to be serotype A.
It was not thought possible, however, to distinguish serotype D
organisms from yeast cells of serotype AD, as the latter serotype
displays capsular antigens of both serotypes A and D.
8. RESULTS
From Table 4 it can be seen that of 31 cases presented
here with a tissue and mycological diagnosis of C.
neoformans, 14 were categorized
immunohistochemically as C. n. var. neoformans and 17
as C. n. var. gattii.
Results of biotyping of cultured isolates, from the same
cases, using CGB agar yielded 15 as C. n. var.
neoformans and 16 as C. n. var. gattii.
In all cases bar one, the variety determined by the
immunohistochemical method matched the variety
determined by culture on CGB agar.
The sensitivity of the immunohistochemical method to
determine cryptococcal variety in formalin fixed
tissues was initially determined to be 97% (1/31 false
negative) and the specificity was rated as 100% (0/31
false positive), using the CGB agar method as the gold
standard.
Two C. n. var. gattii isolates were not available for
serotyping. All C. n. var. gattii isolates serotyped were
serotype B. A further isolate, determined to be C. n.
var. neoformans on CGB agar, was also found to be
serotype B.
It also had microscopic and colony morphology
consistent with C. n. var. gattii. As this isolate would
actually appear to be C. n. var. gattii, the sensitivity of
immunohistochemistry to determine cryptococcal
variety was 100% (no false negatives). Apart from this
isolate, all C. n. var. neoformans isolates were found to
be serotype A.
9. DISCUSSION
• The aim of this study was to devise a method of reliably identifying yeast cells as C. neoformans in formalin-fixed tissues and
determining their variety. An immunohistochemical approach was devised to provide additional information on the distribution of
capsular material in tissues and on its interaction with the host.
• The immunohistochemical method described in this paper proved to be consistent and accurate in our hands. The important
factors underlying the accuracy of this method include the speciŽcity of the primary antibodies, the success of antigen retrieval and
the use of appropriate dilutions and staining conditions.
• The present investigation has shown mAbs 471 and 302 to be most useful in this immunohistochemical context to biotype C.
neoformans in tissue sections. The relevant antigenic sites seem to be abundant and easily retrieved from formalin-fixed paraffin-
embedded tissues using standard immunohistochemical techniques.
• The technique currently appears capable of distinguishing between the varieties of C. neoformans and possibly also to
differentiate between serotypes A and D, although it is inherently unable to distinguish between serotype D isolates and serotype
AD isolates. There was some disparity between the results of the Crypto-Check kit and the immunohistochemical method with
regard to isolates immunoreactive for serotype D epitopes. At one laboratory, five isolates displayed reactivity to Factor 7
(serotype A specific) and weak reactivity to Factor 8 (serotype D specific) using the Crypto-Check kit, whereas at another
laboratory the same isolates displayed serotype A reactivity only.
• Consequently, these isolates were designated as serotype A in the present study. However, of those five cases, three were
positively labelled by mAb CRND8 using immunohistochemistry, indicating the presence of serotype D capsular antigens.
Although Factor 8 (Crypto-Check kit) and mAb CRND8 have been shown to have equivalent specificity of antigenic site [47], it is
possible that the immunohistochemical method has greater sensitivity than a slide agglutination method, because individual yeast
cells can be identified as displaying the appropriate antigenic site. This could explain the discrepancy between
immunohistochemistry and the Crypto-Check kit in identifying serotype D isolates.
• Additionally, we are currently attempting to develop molecular techniques to be used as an adjunct to immunohistochemistry to
further characterize C. neoformans isolates in formalin-fixed tissues.
• In conclusion, this study has validated the use of immunohistochemistry to identify and differentiate varieties of C. neoformans in
formalin-fixed paraffin embedded tissues. This provides a number of avenues in which to investigate host–parasite interactions
using archival material, especially where culture was not performed. This will allow an accumulation of data on the prevalence of
infection by the different C. neoformans varieties amongst animal species.