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VEGEPOLYS,
The plant
cluster

Fruitbreedomics, 11 february 2014, Zurich
Fabienne MATHIS
Plant breeding Projects manager
VEGEPOLYS
VEGEPOLYS - Status and goal
An association dedicated to promote plant’s companies
Funding:

Public grants and self financing
Steering committee:
-Public research and higher education (INRA, University)
-Private companies
-Organizations from plant sectors (unions, cooperatives)
-Local chambers (commerce, agriculture)
Members:
300, including 2/3 of small and medium sized companies

Goal:

Set up innovative Research & Developpment
projects to increase the business of companies
Fruitbreedomics 2014-02-11, vegepolys presentation
VEGEPOLYS - Strategic location
The large Loire area of France, a unique concentration of activities
around agriculture and horticulture

4.000 companies
30.000 Jobs

450 Researchers
25 training centers
2.500 Students

Fruitbreedomics 2014-02-11, vegepolys presentation
VEGEPOLYS - Organization
A specific organization to achieve our goal

Emergence Team
5 development managers
Networking between firms,
researchers and higher
education
-conferences
-workshops
-prospecting for
new members and
costumers

Project Team
4 Projects managers
4 Lab technicians
-Laboratory of biotechnologies
+ access to 5 technical platforms
shared:
-Analysis of Nucleic Acids
-Cell imaging
-Collection of Microorganisms
-Phytochemical analyzes
-Tools Phenotyping

Fruitbreedomics 2014-02-11, vegepolys presentation
VEGEPOLYS - Project Team
3 fields of expertises follow the activities of the Loire area:
Breeding and production of plants
Topics

teams

Plant breeding

Projects manager: Fabienne Mathis
Technician: Nadège Lepocreau

Phytopathology and
cropping systems

Projects manager : Caroline Bonneau
Projects manager: Florian Bryone
Technicians: Laetitia Porcher, Lionel
Vandekerckhove

Phytochemistry

Projects manager : Amélie Chaigneau
Technician: Caroline Servant

Fruitbreedomics 2014-02-11, vegepolys presentation
VEGEPOLYS - Breeding plant services
Germplasm evaluation
-Trees of phylogeny
-Trees of diversity
-Floral biology
-Mode of reproduction
Tools
Breeding consulting
Germplasm management
platforms
-Bibliography
-Phenotyping
-Analysis of Nucleic Acids-Genotyping
-Specifications
-Planning of the breeding -Cell imaging
-in vitro culture
-Phenotyping tools -Data analysis
-Monitoring
Facilities
-Outsourcing
-Breeding program
-Greenhouses
-Growth rooms
-in vitro laboratory
Breeding selection
-Phenotypic identification and selection
-Genetic identification and selection: MAB
Fruitbreedomics 2014-02-11, vegepolys presentation
VEGEPOLYS - MAB services
Principle and goals

Principle:
1-For a given species, some plants present 1 or several biological
characters relevant for the selection.
2-Each character can be linked to a gene.
3-This gene is labelled by a specific molecular marker.
 So we can detect the presence or not of a character in all plants of
this species assisted by a marker, it is the MAB principle.

Main goals of the MAB:
 The MAB can be used to select hybrids carrying genes of interest
and to compile these genes to create a new genitor

Fruitbreedomics 2014-02-11, vegepolys presentation
VEGEPOLYS - MAB services
transfer of genetic knowledge for fruit trees breeders

A list of fruit trees which have 1 or several genes linked to 1 or several
biological characters of interest will be done by the researchers of
Fruitbreedomics and previous projects.
 So the MAB fruitbreedomics services allow to detect the genes
inherited from these parent trees into hybrids.

Fruitbreedomics 11-02-2014, vegepolys presentation
VEGEPOLYS - MAB services
Services adapted to the small and medium sized companies

•
•
•
•
•

Definition of the project and specific objectives
Identification of expert if necessary (INRA researchers)
Design and evaluation of technical and human resources
Quotation
Realization of the project

 Outsourcing of the R&D activities for small and medium
companies and taking care to adapt our response to the
resources of our client.

Fruitbreedomics 2014-02-11, vegepolys presentation
VEGEPOLYS - MAB services
experience in MAB

R&D experience
-Genotyping and detection of genes for Hidras and Isafruit europeen
projects
-Establishment of a methodology of MAB for Isafruit: poster

-MAB service experience
Several clients breeders for rosacea family
-Extraction of DNA
-Molecular analysis with markers published or provided by
researchers
-Detailed report

Fruitbreedomics 2014-02-11, vegepolys presentation
Fruitbreedomics 11-02-2014,
vegepolys presentation
Thanks for your attention
www.vegepolys.eu
 fabienne.mathis@vegepolys.eu


Fruitbreedomics 11-02-2014, vegepolys presentation

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7 ve gepolys fruitbreedomics mab services

  • 1. VEGEPOLYS, The plant cluster Fruitbreedomics, 11 february 2014, Zurich Fabienne MATHIS Plant breeding Projects manager VEGEPOLYS
  • 2. VEGEPOLYS - Status and goal An association dedicated to promote plant’s companies Funding: Public grants and self financing Steering committee: -Public research and higher education (INRA, University) -Private companies -Organizations from plant sectors (unions, cooperatives) -Local chambers (commerce, agriculture) Members: 300, including 2/3 of small and medium sized companies Goal: Set up innovative Research & Developpment projects to increase the business of companies Fruitbreedomics 2014-02-11, vegepolys presentation
  • 3. VEGEPOLYS - Strategic location The large Loire area of France, a unique concentration of activities around agriculture and horticulture 4.000 companies 30.000 Jobs 450 Researchers 25 training centers 2.500 Students Fruitbreedomics 2014-02-11, vegepolys presentation
  • 4. VEGEPOLYS - Organization A specific organization to achieve our goal Emergence Team 5 development managers Networking between firms, researchers and higher education -conferences -workshops -prospecting for new members and costumers Project Team 4 Projects managers 4 Lab technicians -Laboratory of biotechnologies + access to 5 technical platforms shared: -Analysis of Nucleic Acids -Cell imaging -Collection of Microorganisms -Phytochemical analyzes -Tools Phenotyping Fruitbreedomics 2014-02-11, vegepolys presentation
  • 5. VEGEPOLYS - Project Team 3 fields of expertises follow the activities of the Loire area: Breeding and production of plants Topics teams Plant breeding Projects manager: Fabienne Mathis Technician: Nadège Lepocreau Phytopathology and cropping systems Projects manager : Caroline Bonneau Projects manager: Florian Bryone Technicians: Laetitia Porcher, Lionel Vandekerckhove Phytochemistry Projects manager : Amélie Chaigneau Technician: Caroline Servant Fruitbreedomics 2014-02-11, vegepolys presentation
  • 6. VEGEPOLYS - Breeding plant services Germplasm evaluation -Trees of phylogeny -Trees of diversity -Floral biology -Mode of reproduction Tools Breeding consulting Germplasm management platforms -Bibliography -Phenotyping -Analysis of Nucleic Acids-Genotyping -Specifications -Planning of the breeding -Cell imaging -in vitro culture -Phenotyping tools -Data analysis -Monitoring Facilities -Outsourcing -Breeding program -Greenhouses -Growth rooms -in vitro laboratory Breeding selection -Phenotypic identification and selection -Genetic identification and selection: MAB Fruitbreedomics 2014-02-11, vegepolys presentation
  • 7. VEGEPOLYS - MAB services Principle and goals Principle: 1-For a given species, some plants present 1 or several biological characters relevant for the selection. 2-Each character can be linked to a gene. 3-This gene is labelled by a specific molecular marker.  So we can detect the presence or not of a character in all plants of this species assisted by a marker, it is the MAB principle. Main goals of the MAB:  The MAB can be used to select hybrids carrying genes of interest and to compile these genes to create a new genitor Fruitbreedomics 2014-02-11, vegepolys presentation
  • 8. VEGEPOLYS - MAB services transfer of genetic knowledge for fruit trees breeders A list of fruit trees which have 1 or several genes linked to 1 or several biological characters of interest will be done by the researchers of Fruitbreedomics and previous projects.  So the MAB fruitbreedomics services allow to detect the genes inherited from these parent trees into hybrids. Fruitbreedomics 11-02-2014, vegepolys presentation
  • 9. VEGEPOLYS - MAB services Services adapted to the small and medium sized companies • • • • • Definition of the project and specific objectives Identification of expert if necessary (INRA researchers) Design and evaluation of technical and human resources Quotation Realization of the project  Outsourcing of the R&D activities for small and medium companies and taking care to adapt our response to the resources of our client. Fruitbreedomics 2014-02-11, vegepolys presentation
  • 10. VEGEPOLYS - MAB services experience in MAB R&D experience -Genotyping and detection of genes for Hidras and Isafruit europeen projects -Establishment of a methodology of MAB for Isafruit: poster -MAB service experience Several clients breeders for rosacea family -Extraction of DNA -Molecular analysis with markers published or provided by researchers -Detailed report Fruitbreedomics 2014-02-11, vegepolys presentation
  • 12. Thanks for your attention www.vegepolys.eu  fabienne.mathis@vegepolys.eu  Fruitbreedomics 11-02-2014, vegepolys presentation