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Enzyme
Kinetics
Prof. Dr. V.P. Acharya
How enzymes work???
 Enzymes provide an alternate,
energetically favorable pathway different
from uncatalyzed reaction
 The active site chemically facilitates
catalysis
A. Energy changes
occurring during reaction
A ↔ T* ↔ B
Energy barrier separates reactants
and products.
Energy barrier- Free energy of
activation
↓
Energy difference between reactants
and high energy intermediate T*
a) Free energy of activation
 Uncatalyzed reactions- high EA
 Rate of reactions thus slow
b) Rate of reaction
 For molecules to react they must possess
sufficient energy to overcome the barrier of
transition state
c) Alternate reaction pathway
Enzyme provides an alternate pathway having low
activation energy
Lowering of activation energy– making a tunnel in
the mountain
B. Chemistry of active site
1. 1. Transition state stabilization
Active site acts as a flexible molecular
template
↓
Stabilizes the substrate in its transition
state
↓
Reaction accelerated
2.Providing catalytic group
Active site provides catalytic
groups
↓
↑ probability of transition state
formation
E+S↔ES ↔ E+ P
Visualization of the
transition state
Mechanism of enzyme action
 Michelis-Menten Theory
 Fischer’s template theory
 Koshland’s induced fit theory
Fisher’s Lock and Key
model
Koshland’s Induced fit model
Substrate induces conformational changes in enzyme
Man can accept his fate, man can
Mechanism of enzyme catalysis
1. Catalysis by proximity- reactants should
come closer
More reactants- ↑ probability of reaction due
to proximity (Entropy effect)
2. Acid-base catalysis- Ionizable functional
groups of amino-acyl side chains and
prosthetic groups act as acids & bases-
enhances formation of T state
a. Specific b. general
3. Substrate strain
Enzyme binds to substrate in unfavorable way
↓
stretch or distortion of bond
↓
cleavage of bond
4. Covalent catalysis
Covalent bond between enzyme and one or more
substrates are formed
↓
Enzyme becomes a reactant
↓
On completion of reaction, enzyme returns to original state
Next class…………..
ENZYME KINETICS AND FACTORS
AFFECTING ENZYME ACTION
For more Medical Biochemistry ppt please visit
www.vpacharya.com

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3 enzyme kinetics

  • 2. How enzymes work???  Enzymes provide an alternate, energetically favorable pathway different from uncatalyzed reaction  The active site chemically facilitates catalysis
  • 3. A. Energy changes occurring during reaction A ↔ T* ↔ B Energy barrier separates reactants and products. Energy barrier- Free energy of activation ↓ Energy difference between reactants and high energy intermediate T*
  • 4. a) Free energy of activation  Uncatalyzed reactions- high EA  Rate of reactions thus slow
  • 5. b) Rate of reaction  For molecules to react they must possess sufficient energy to overcome the barrier of transition state c) Alternate reaction pathway Enzyme provides an alternate pathway having low activation energy Lowering of activation energy– making a tunnel in the mountain
  • 6. B. Chemistry of active site 1. 1. Transition state stabilization Active site acts as a flexible molecular template ↓ Stabilizes the substrate in its transition state ↓ Reaction accelerated
  • 7. 2.Providing catalytic group Active site provides catalytic groups ↓ ↑ probability of transition state formation E+S↔ES ↔ E+ P
  • 9.
  • 10. Mechanism of enzyme action  Michelis-Menten Theory  Fischer’s template theory  Koshland’s induced fit theory
  • 11.
  • 12. Fisher’s Lock and Key model
  • 13. Koshland’s Induced fit model Substrate induces conformational changes in enzyme
  • 14.
  • 15. Man can accept his fate, man can
  • 16. Mechanism of enzyme catalysis 1. Catalysis by proximity- reactants should come closer More reactants- ↑ probability of reaction due to proximity (Entropy effect) 2. Acid-base catalysis- Ionizable functional groups of amino-acyl side chains and prosthetic groups act as acids & bases- enhances formation of T state a. Specific b. general
  • 17. 3. Substrate strain Enzyme binds to substrate in unfavorable way ↓ stretch or distortion of bond ↓ cleavage of bond 4. Covalent catalysis Covalent bond between enzyme and one or more substrates are formed ↓ Enzyme becomes a reactant ↓ On completion of reaction, enzyme returns to original state
  • 18. Next class………….. ENZYME KINETICS AND FACTORS AFFECTING ENZYME ACTION
  • 19. For more Medical Biochemistry ppt please visit www.vpacharya.com

Editor's Notes

  1. Even if it’s thermodynamically favorable, substrates are to be rearranged to a transition state before producing the products. It is never spontaneous. T state is unstable, once formed it immediately gets converted to P.