Botany Software
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GeneRunner is a software application that allows users to analyze genetic information contained in SEQ format files. It enables users to view open reading frames, annotate sequences, perform restriction analysis on DNA sequences, and design primers for sequencing. GeneRunner is useful for professionals and students in genetics as it provides tools for tasks like DNA and RNA sequencing in an efficient manner.
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This document discusses reference materials and datasets developed by the Genome in a Bottle Consortium to benchmark genome sequencing and analysis methods. Key points:
- The Consortium has developed reference materials including human and microbial genomic DNA samples that have been extensively characterized to provide "gold standard" calls used for benchmarking.
- They have released datasets including whole genome, exome, and long-read sequencing data for several personal genomes, including PGP trios, that can be used to benchmark variant calling and other analysis methods.
- An iterative process is used to integrate calls from different methods and datasets to establish high-confidence benchmark calls, filtering out variants with characteristics of bias. The benchmark calls are periodically updated as new data becomes available
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This document discusses the Genome in a Bottle Consortium's efforts to develop reference materials and data to evaluate whole genome sequencing performance. It summarizes the release of new reference materials, including additional Genome in a Bottle samples from the Personal Genome Project and microbial genomic DNA standards. The consortium aims to apply principles of metrology to genome analysis by generating extensively characterized reference genomes and associated data that can be used to develop and validate analysis methods.
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The document discusses the Genome in a Bottle Consortium's efforts to develop reference materials, data, methods, and performance metrics for evaluating whole genome sequencing and variant calling. It provides details on newly released reference materials, including additional Genome in a Bottle reference genomes from the Personal Genome Project consisting of an Ashkenazi Jewish trio and their Asian son. The materials are extensively characterized and are intended to help validate and improve sequencing and analysis methods.
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This document provides an overview of search engine optimization (SEO) including:
- Definitions of key SEO terms like search engines, crawling, indexing, and ranking algorithms.
- The basic SEO process including on-page and off-page optimization techniques.
- On-page optimization elements like titles, meta descriptions, internal links.
- Off-page optimization techniques like link building and social sharing.
- The difference between white hat and black hat SEO strategies.
- An introduction to Google algorithms like Panda, Penguin and Hummingbird.
- Recommended SEO tools to use.
A Star Search
The document discusses the A* search algorithm, which is an informed search or heuristic search algorithm. A* combines the best aspects of uniform cost search and greedy best-first search. It is guaranteed to find the shortest path to the goal, if such a path exists. A* evaluates nodes by using both the path cost from the start node to the current node, plus an estimate of the cost to get from the current node to the goal node. It prioritizes expanding the most promising nodes first, those with the lowest combined cost. A* is optimal and admissible if the heuristic function never overestimates the actual cost to the goal.
Enterprise Application Integration
This document discusses enterprise application integration (EAI). It defines EAI as the unrestricted sharing of data and business processes among any connected applications and data sources in an enterprise. The document outlines EAI architectures including multi-tier architectures with presentation, application, and data tiers. It also discusses middleware, which allows communication across different platforms and between legacy and modern applications. The benefits of EAI include lower development and maintenance costs through looser coupling of systems and quicker integration.
Uml Diagrams
The document discusses the different types of UML diagrams used for modeling software systems. There are two main categories of UML diagrams - structural diagrams, which depict the static elements of a system, and behavioral diagrams, which depict the dynamic behavior and interactions of system components. Some key UML diagram types discussed include class diagrams, component diagrams, deployment diagrams, activity diagrams, sequence diagrams, use case diagrams, and state machine diagrams. The document provides examples and brief explanations of when each diagram type is used.
eDras Max
Edraw Max is a comprehensive diagramming software that allows users to easily create a wide range of professional-looking diagrams, including flowcharts, org charts, network diagrams, and more. It has a large library of vector shapes and templates. The software has an intuitive Office-style interface and is easy to use, even for those with no training. Edraw Max allows users to quickly design diagrams using built-in templates and examples and arrange and style elements for professional results.
RAD Model
This document discusses methods for rapid software development. It covers topics like agile methods, extreme programming, rapid application development, and software prototyping. Some key points made are:
- Rapid development is needed to quickly respond to changing business needs, even if it means lower initial quality.
- Agile methods focus on iterative development and early delivery of working software that can evolve rapidly based on changing requirements.
- Rapid application development uses tools that facilitate rapid creation of interfaces and reports linked to a database.
- Visual programming allows rapid prototyping through a graphical interface but can cause coordination and maintenance issues for large projects.
Microsoft Project
Microsoft Project is a project management software that helps plan, assign resources, track progress, manage budgets, and analyze workloads for projects. It was first released in 1984 and acquired by Microsoft in 1985. The latest version is Microsoft Project 2013. It allows users to create project schedules and budgets, assign resources to tasks, track progress, and keep project teams aligned to complete projects on time and on budget. Microsoft Project provides robust management tools to help users efficiently and effectively manage all aspects of a project throughout its life cycle from planning to closing.
Itertaive Process Development
Iterative development breaks down software development into smaller chunks called iterations. In each iteration, features are designed, developed, and tested, with additional features added in subsequent iterations until a fully functional application is ready. The iterative process follows the ADCOT principles of analysis, design, coding, and testing. It progresses through phases of inception to identify high-level requirements, elaboration to deliver a working architecture, construction to incrementally develop features, and transition to deploy the application. Iterative development allows for backtracking and modifications between iterations, in contrast to the waterfall method which completes each development step in full before moving to the next.
Computer Aided Software Engineering Nayab Awan
The document discusses Computer Aided Software Engineering (CASE) tools. It defines CASE as the use of software tools to assist in software development and maintenance. It outlines that CASE tools can help improve quality, maintenance and project management. The document then describes different types of CASE tools, including diagramming, process modeling, project management, documentation, analysis, design, configuration management, programming, prototyping and quality assurance tools. It concludes that CASE tools can increase productivity, decrease costs and enhance product quality when used appropriately.
Lect 2 assessing the technology landscape
The document discusses various technologies that are shaping the enterprise integration landscape, including legacy systems, data warehousing, enterprise application integration, electronic commerce, web-enabled applications, XML, workflow management, distributed objects, components, UML, digital signatures, wireless devices, knowledge management, agent technology, interactive voice, and model driven architecture. It provides brief descriptions of each technology and some key challenges related to enterprise integration.
system level requirements gathering and analysis
The document discusses the importance of requirements gathering for project success. It notes that 70-80% of project failures can be attributed to poor requirements gathering, analysis, and management. While requirements gathering is critical, it is often overlooked or not allocated enough time. The document provides five key components of effective requirements gathering: clearly defining requirements before scope, identifying project and product requirements, adequately documenting requirements, selecting the right methodology, and engaging diverse users. It emphasizes that requirements gathering lays the foundation for a successful project.
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Botany Software
- 1. Name : Komal Mehmood Roll # 1070 Bs (hons) Botany(M) 3rd University Of Education Okara Campus
- 2. Introduction Main points Uses Purpose Conclusion References
- 3. Gene Runner is a professional application aimed at providing geneticists and biologists with a reliable tool that can help them conduct gene analysis with ease. The application requires SEQ format files that contain genetic information, which can then be analyzed using the 'ORF' (Open Reading Frame) button, that enables users to set the preferred Nucleotides or Amino Acids size, as well as select the 'Translation Table' to work with. After opening the ORF item, users can make various annotations
- 4. It tells about DNA sequence RNA sequence Amino acids sequence Protien sequence Nucleotides sequence
- 5. It is use to run a gene and engineer a gene The 'Restriction Analysis' function of Gene Runner enables users to only check a portion of the DNA sequence, by entering the preferred cut sites. In addition, they can analyze all enzyme types or only the palindromic / non-palindromic ones. This function also offers users the option of setting a precise analysis region and discarding
- 7. GeneRunner is a simple molecular biology analysis program. You can enter DNA or protein sequences, either by hand or by downloading sequence data from GenBank or other databases. GeneRunner can then perform the standard manipulations of sequence data: searching DNA sequences for restriction sites (the restriction enzyme database files were updated in 1999, so they list almost all enzymes known); searching protein sequences for peptidase cleavage sites; translation of DNA into protein sequence, and searching for ORFs; PCR and sequencing primer design; multiple sequence alignments
- 8. is the rather unattractive interface, but the numerous functions and features make up for its flawsThe 'Sequencing and Hybridization Analysis' feature allows users to display the primer characteristics of the selected DNA portion, or discard certain types of primers. Gene Runner saves the information on Amino Acids in tables and this data is also be used with the 'Protein Analysis' functions, the 'Suppressor' and the 'Translation Tables'. This is required as Gene Runner will send an error message if the used Amino Acid is not defined in the said tables. In addition, all information concerning these elements is editable, so users can fully adjust their values. Gene Runner is a great tool for professionals in the field, as well as genetics students, as it provides them with an efficient tool for DNA and RNA sequencing. The only downside of this application
- 9. IT is very interesting software It help user to understand about sequence of Genes It tells how to run a gene I have no complain about it