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Cloning
Direct by
Cloning
• Organisms that are genetically identical are
clones
• Asexual Reproduction always produces
clones
• Laboratory Techniques have been
developed that have allowed this to happen
in Animals
Cloning in Plants
Plant Cloning
Cloning in Animals
• 1950’s first experiments done with
Frogs.
• Early 1990’s some success found with
Mice, Mice were cloned by using
nuclei of cells taken from Mice
Embryos.
• Wilmut et al. Produced “Dolly” in
1997.
Cloning – Steps of Dolly
• Used Genetic Information Taken from Udder of Adult
Sheep (donor).
• Unfertilized Eggs Collected from sheep and had
nuclei removed.
• Nuclei from Udder Cells Transplanted into the egg
cells.
• Resulting Cells were cultured and a few began to
divide.
• These early embryos implanted into a surrogate
mother. One of these developed into a Lamb – Dolly.
• DNA Tests confirmed that the Lamb was identical
Genetically to the Sheep that had provided the Udder
Cells.
Cloning Genes
• Gene cloning: amplifying a
specific piece of DNA via a
bacteria.
Gene Cloning Steps
1. The target gene is isolated and cut out
using a Restriction Enzyme.
2. The bacterial plasmid is cut open using the
same Restriction Enzyme.
3. DNA ligase (Ligase) the target gene into
the plasmid.
4. Monitoring (gel electrophoresis).
5. Recombinant plasmid is inserted into the
bacterium by transformation.
Restriction Enzyme
A restriction enzyme or restriction
endonucleases is an enzyme that cleaves
DNA into fragments at or near specific
recognition sites within the molecule known
as restriction site.
Restriction Enzymes
Restriction site
Type of Restriction Enzymes
• Type I: Restriction Endonucleases are
single multifunctional enzymes with three
different subunits. They required ATP,
Mg2+ and S-adenosylmethionine for its
activity. Their active cleavage site usually
present at least 1000 bp away from the
host specificity site.
Example: EcoB
• Type II: restriction endonucleases are most
common type. Enzymes Recognize a
particular target sequence in a duplex DNA
molecule and break the phosphodiester bond
within, or near. require no cofactor other than
Mg2+ .
Example: EcoRI : GAATTC
• Type III : Restriction enzymes are
characterized by their ability to cut DNA in
a specific location known and They
required ATP , Mg2+ and S-
adenosylmethionine for its activity.
Example : EcoP1
‘5GAATTC3’
‘3CTTAAG5’
‘5G AATTC3’
‘3CTTAA G5’
‘5CCCGGG3’
‘3GGGCCC5’
‘5CCC GGG3’
‘3GGG CCC5’
CLONING VECTORS
Cloning vectors are DNA molecules that are
used to "transport" cloned sequences between
biological hosts and the test tube.
CHARACTERISTICS
1.Self replication, multiple copies.
2.Replication origin site.
3.Selectable marker gene.
4.Small size.
5.Low molecular weight.
6.Easily isolated & purified.
7.Easily isolated into host cell.
8.pass into new cells during cell division.
9.Unique restriction sites to facilitate cloning of
insert DNA.
Type of cloning vector
•plasmids
•bacteriophageλ , M13
•Cosmids
•Artificial chromosomes BAC, YAC, MAC
etc.
What Determines Choice of Vector
• Insert size
• Vector size
• Restriction size
• Cloning
efficiency
Vector Insert size (kb)
Plasmid < 10 kb
Bacteriophage 3 – 18 kb
Cosmids 23 – 45 kb
BACs ≤ 300 kb
PACs 100 – 300 kb
YACs 100 – 3000kb
Plasmid
•Extrachromosomal DNA found in bacteria.
•Close circular DNA molecules, supercoiled.
•Can replicate independent of chromosome.
•Can be transfer to other cells by conjugation.
•Can be integrated into the chromosome.
•plasmids carry genes like Resistance to Antibiotics.
•Number of plasmid per cell - controlled by plasmid itself
High copy number > 100 /cell; low copy number < 20 /cell
pBR322
• pBR322 is a plasmid and was one of the
first widely used E.coli cloning vectors.
• The p stands for "plasmid," and BR for
"Bolivar" and "Rodriguez.“
• 15 copies.
• Ampilicin resistance gene
• Tetracycline resistance gene
• Origin of replication (Ori)
• Two selectable markers
(Ampilicin,Tetracycline)
DNA ligase is a specific type of enzyme,
a ligase that facilitates the joining
of DNA strands together by catalysing the
formation of a phosphodiester bond . It plays
a role in repairing single-strand breaks in
duplex DNA in living organisms, but some
forms (such as DNA ligase IV) may
specifically repair double-strand breaks. with
DNA ligase creating the final phosphodiester
bond to fully repair the DNA.
DNA ligase
DNA Ligase
Chromosome
DNA
• Gel electrophoresis is a method for separation and
analysis of macromolecules (DNA, RNA and protein) and
their fragments, based on their size and charge.
• DNA samples are loaded into wells (indentations) at one end
of a gel, and an electric current is applied to pull them
through the gel.
• When a gel is stained with a DNA-binding dye, the DNA
fragments can be seen as bands, each representing a
group of same-sized DNA fragments.
Gel electrophoresis
Thank you

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Cloning

  • 2. Cloning • Organisms that are genetically identical are clones • Asexual Reproduction always produces clones • Laboratory Techniques have been developed that have allowed this to happen in Animals
  • 4. Cloning in Animals • 1950’s first experiments done with Frogs. • Early 1990’s some success found with Mice, Mice were cloned by using nuclei of cells taken from Mice Embryos. • Wilmut et al. Produced “Dolly” in 1997.
  • 5.
  • 6. Cloning – Steps of Dolly • Used Genetic Information Taken from Udder of Adult Sheep (donor). • Unfertilized Eggs Collected from sheep and had nuclei removed. • Nuclei from Udder Cells Transplanted into the egg cells. • Resulting Cells were cultured and a few began to divide. • These early embryos implanted into a surrogate mother. One of these developed into a Lamb – Dolly. • DNA Tests confirmed that the Lamb was identical Genetically to the Sheep that had provided the Udder Cells.
  • 7.
  • 8. Cloning Genes • Gene cloning: amplifying a specific piece of DNA via a bacteria.
  • 9. Gene Cloning Steps 1. The target gene is isolated and cut out using a Restriction Enzyme. 2. The bacterial plasmid is cut open using the same Restriction Enzyme. 3. DNA ligase (Ligase) the target gene into the plasmid. 4. Monitoring (gel electrophoresis). 5. Recombinant plasmid is inserted into the bacterium by transformation.
  • 10.
  • 11.
  • 12.
  • 13. Restriction Enzyme A restriction enzyme or restriction endonucleases is an enzyme that cleaves DNA into fragments at or near specific recognition sites within the molecule known as restriction site.
  • 15. Type of Restriction Enzymes • Type I: Restriction Endonucleases are single multifunctional enzymes with three different subunits. They required ATP, Mg2+ and S-adenosylmethionine for its activity. Their active cleavage site usually present at least 1000 bp away from the host specificity site. Example: EcoB
  • 16. • Type II: restriction endonucleases are most common type. Enzymes Recognize a particular target sequence in a duplex DNA molecule and break the phosphodiester bond within, or near. require no cofactor other than Mg2+ . Example: EcoRI : GAATTC
  • 17. • Type III : Restriction enzymes are characterized by their ability to cut DNA in a specific location known and They required ATP , Mg2+ and S- adenosylmethionine for its activity. Example : EcoP1
  • 19.
  • 20. CLONING VECTORS Cloning vectors are DNA molecules that are used to "transport" cloned sequences between biological hosts and the test tube.
  • 21. CHARACTERISTICS 1.Self replication, multiple copies. 2.Replication origin site. 3.Selectable marker gene. 4.Small size. 5.Low molecular weight. 6.Easily isolated & purified. 7.Easily isolated into host cell. 8.pass into new cells during cell division. 9.Unique restriction sites to facilitate cloning of insert DNA.
  • 22. Type of cloning vector •plasmids •bacteriophageλ , M13 •Cosmids •Artificial chromosomes BAC, YAC, MAC etc.
  • 23. What Determines Choice of Vector • Insert size • Vector size • Restriction size • Cloning efficiency Vector Insert size (kb) Plasmid < 10 kb Bacteriophage 3 – 18 kb Cosmids 23 – 45 kb BACs ≤ 300 kb PACs 100 – 300 kb YACs 100 – 3000kb
  • 24. Plasmid •Extrachromosomal DNA found in bacteria. •Close circular DNA molecules, supercoiled. •Can replicate independent of chromosome. •Can be transfer to other cells by conjugation. •Can be integrated into the chromosome. •plasmids carry genes like Resistance to Antibiotics. •Number of plasmid per cell - controlled by plasmid itself High copy number > 100 /cell; low copy number < 20 /cell
  • 25. pBR322 • pBR322 is a plasmid and was one of the first widely used E.coli cloning vectors. • The p stands for "plasmid," and BR for "Bolivar" and "Rodriguez.“ • 15 copies. • Ampilicin resistance gene • Tetracycline resistance gene • Origin of replication (Ori) • Two selectable markers (Ampilicin,Tetracycline)
  • 26.
  • 27. DNA ligase is a specific type of enzyme, a ligase that facilitates the joining of DNA strands together by catalysing the formation of a phosphodiester bond . It plays a role in repairing single-strand breaks in duplex DNA in living organisms, but some forms (such as DNA ligase IV) may specifically repair double-strand breaks. with DNA ligase creating the final phosphodiester bond to fully repair the DNA. DNA ligase
  • 29.
  • 30.
  • 31. • Gel electrophoresis is a method for separation and analysis of macromolecules (DNA, RNA and protein) and their fragments, based on their size and charge. • DNA samples are loaded into wells (indentations) at one end of a gel, and an electric current is applied to pull them through the gel. • When a gel is stained with a DNA-binding dye, the DNA fragments can be seen as bands, each representing a group of same-sized DNA fragments. Gel electrophoresis
  • 32.
  • 33.
  • 34.
  • 35.
  • 36.