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NUCLEIC ACID
HYBRIDIZATION
YBT201
SUBMITTED TO PRESENTED BY ,
MISS P. MALA M.MUTHULAKSHMI
ASSISTANT PROFESSOR 123011356013
DEPARTMENT OF BIOTECHNOLOGY M.SC 1 YEAR (BIOTEC
PMIST
VALLAM
CONTENTS
• Introduction
• DNA
• Hybridization probes
• Probe types
• Types of hybridization
• Application
• Reference
INTRODUCTION
• It is the process in which two complementary single-stranded
DNA and/or RNA molecules bond together to form a double-
stranded molecule.
• Hybridization methods are based on labeled DNA or RNA acts
as probes to detect nucleic acids in specimens.
DNA
• Watson and crick model of DNA was followed And it possesses
Two strands
• Those strands are held by hydrogen bonds
• Nucleic acid hybridization is a process Used to identify Specific
DNA sequence . This is performed by means of DNA probe .
• Probes used In hybridization reactions are usually chemically
synthesised DNA or RNA
• Nucleic acid hybridization Can be done in all Combinations :
DNA-DNA, DNA-RNA Or RNA – RNA , Insitu hybridization And
FISH analysis
HYBRIDIZATION PROBES
• It is a nucleic acid Fragment that Is complementary To another
nucleic acids sequence
• A probe actually hybridize To single stranded nucleic acid
• Nucleic acid probe can be synthesised in the laboratory
PROBE TYPES
• Probes are three types
1. DNA probe
2. RNA probe
3. Oligonucleotide probe
TYPES OF HYBRIDIZATION
• There are mainly three techniques of hybridization
1. Southern hybridization
2. Northern hybridization
3. Colony hybridization
SOUTHERN HYBRIDIZATION
• Southern blotting is a technique Employed for detection Of
specific DNA sequence in DNA sample
• It was First given by E.M Southern , in British biologist
• This method is include Separation of restricted DNA fragments
By Electrophoresis
APPLICATIONS
• Southern blotting used for Gene discovery, mapping, evolution
• It is used make RFLP maps
• Identify Specific DNA in the sample
• Used in phylogenetic analysis
NORTHERN HYBRIDIZATION
• Northern blotting was developed by James alwine, George
stark and Dravid kemp in 1977
• In this technique which RNA fragments Separated by
electrophoresis and immobilised on the membrane
• The Identification of specific RNA is done By using nucleic acid
probes
APPLICATIONS
• mRNA splicing studies
• To study the gene expression Of various tissue, organs ,
development stages,
pathogen infection
COLONY HYBRIDIZATION
• It is a method of Isolating a colony containing plasmid
Harboring a particular sequence Or gene from a mixed
population
• The colonies to be screened are first replic Plated onto a
nitrocellulose
APPLICATIONS
• Library screening
• Southern blot
• Northern blot
• ASOs to detect mutations
1) The process by which a probe is used to screen a library is
known as ___________
a) Hybridization
b) Southern blotting
c) Colony hybridization
d) Western blotting
2) In how many ways a DNA can be labeled?
a) 2
b) 3
c) 4
d) 5
3) What is a probe
A) Chemically synthesized DNA
b) Purified DNA
c) Fragmented DNA duplex
d) Either purified or synthesized single stranded
DNA
4) Nucleic acid hybridization is process Used to
identify Specific
a) DNA
b) RNA
C) DNA sequence
d) Nucleotides
5)Which of the following is not termed as hybridization?
A) DNA and cDNA
b) DNA and mRNA
c) DNA from different species
d) DNA from male and female of same species
ANSWERS
1.C
2.A
3.D
4.C
5.d
1. Felsenfeld, G; Miles, HT (1967). “The physical and chemical
properties of nucleic acids”. Apnnual Review of Biochemistry. 36:
407–48.
2. McClean, Phillip. “Nucleic Acid Hybridizations”. DNA – Basics of
Structure and Analysis. Retrieved 26 May 2017.
3. Levsky, JM; Singer, RH (15 July 2003). “Fluorescence in situ
hybridization: past, present and future”. Journal of Cell Science. 116
(Pt 14):
THANK YOU
•

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Recombination DNA Technology (Nucleic Acid Hybridization )

  • 1. NUCLEIC ACID HYBRIDIZATION YBT201 SUBMITTED TO PRESENTED BY , MISS P. MALA M.MUTHULAKSHMI ASSISTANT PROFESSOR 123011356013 DEPARTMENT OF BIOTECHNOLOGY M.SC 1 YEAR (BIOTEC PMIST VALLAM
  • 2. CONTENTS • Introduction • DNA • Hybridization probes • Probe types • Types of hybridization • Application • Reference
  • 3. INTRODUCTION • It is the process in which two complementary single-stranded DNA and/or RNA molecules bond together to form a double- stranded molecule. • Hybridization methods are based on labeled DNA or RNA acts as probes to detect nucleic acids in specimens.
  • 4. DNA • Watson and crick model of DNA was followed And it possesses Two strands • Those strands are held by hydrogen bonds • Nucleic acid hybridization is a process Used to identify Specific DNA sequence . This is performed by means of DNA probe . • Probes used In hybridization reactions are usually chemically synthesised DNA or RNA
  • 5. • Nucleic acid hybridization Can be done in all Combinations : DNA-DNA, DNA-RNA Or RNA – RNA , Insitu hybridization And FISH analysis
  • 6. HYBRIDIZATION PROBES • It is a nucleic acid Fragment that Is complementary To another nucleic acids sequence • A probe actually hybridize To single stranded nucleic acid • Nucleic acid probe can be synthesised in the laboratory
  • 7. PROBE TYPES • Probes are three types 1. DNA probe 2. RNA probe 3. Oligonucleotide probe
  • 8.
  • 9. TYPES OF HYBRIDIZATION • There are mainly three techniques of hybridization 1. Southern hybridization 2. Northern hybridization 3. Colony hybridization
  • 10. SOUTHERN HYBRIDIZATION • Southern blotting is a technique Employed for detection Of specific DNA sequence in DNA sample • It was First given by E.M Southern , in British biologist • This method is include Separation of restricted DNA fragments By Electrophoresis
  • 11. APPLICATIONS • Southern blotting used for Gene discovery, mapping, evolution • It is used make RFLP maps • Identify Specific DNA in the sample • Used in phylogenetic analysis
  • 12. NORTHERN HYBRIDIZATION • Northern blotting was developed by James alwine, George stark and Dravid kemp in 1977 • In this technique which RNA fragments Separated by electrophoresis and immobilised on the membrane • The Identification of specific RNA is done By using nucleic acid probes
  • 13. APPLICATIONS • mRNA splicing studies • To study the gene expression Of various tissue, organs , development stages, pathogen infection
  • 14. COLONY HYBRIDIZATION • It is a method of Isolating a colony containing plasmid Harboring a particular sequence Or gene from a mixed population • The colonies to be screened are first replic Plated onto a nitrocellulose
  • 15. APPLICATIONS • Library screening • Southern blot • Northern blot • ASOs to detect mutations
  • 16. 1) The process by which a probe is used to screen a library is known as ___________ a) Hybridization b) Southern blotting c) Colony hybridization d) Western blotting 2) In how many ways a DNA can be labeled? a) 2 b) 3 c) 4 d) 5
  • 17. 3) What is a probe A) Chemically synthesized DNA b) Purified DNA c) Fragmented DNA duplex d) Either purified or synthesized single stranded DNA 4) Nucleic acid hybridization is process Used to identify Specific a) DNA b) RNA C) DNA sequence d) Nucleotides
  • 18. 5)Which of the following is not termed as hybridization? A) DNA and cDNA b) DNA and mRNA c) DNA from different species d) DNA from male and female of same species
  • 20. 1. Felsenfeld, G; Miles, HT (1967). “The physical and chemical properties of nucleic acids”. Apnnual Review of Biochemistry. 36: 407–48. 2. McClean, Phillip. “Nucleic Acid Hybridizations”. DNA – Basics of Structure and Analysis. Retrieved 26 May 2017. 3. Levsky, JM; Singer, RH (15 July 2003). “Fluorescence in situ hybridization: past, present and future”. Journal of Cell Science. 116 (Pt 14):