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Agroecological Approaches to Breeding 
Professor Len Wade, lwade@csu.edu.au. Graham Centre, Charles Sturt 
University, Wagga Wagga, NSW 2650 Australia 
International Symposium on Agroecology for Food Security and Nutrition 
FAO Rome, 18-19 September 2014 
SCHOOL OF AGRICULTURAL & WINE SCIENCES
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
Content 
Crop and system design for improved 
agroecological fitness 
Sustainable intensification, ecosystem services, 
and food and nutrition security 
Competition for resources and their allocation in 
contrasting agronomic systems including 
monoculture, mixtures, and with livestock 
Implications for breeding targets, selection, proof of 
concept
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
Monoculture 
Define growing season – start, end, resources 
Phenological pattern for performance and stability 
Key traits needed for major biotic and abiotic stress 
Effective phenotype with stable performance 
Sample or create diversity, select, test, release 
New crop – evaluate and release 
Major crop – full breeding program
Agroecological Principles for Monoculture 
Resources are finite, capture when available 
Need to understand system dynamics for 
replenishment of available resources 
Issue of competition and phenotype expression 
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
e.g. wheat 
Early generation spaced plants 
vs. advanced generation sward 
Recognise need for a different plant type for 
success in each system
a) 
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
70 
60 
50 
40 
30 
20 
10 
0 
Leaf Area (cm2) 
Yagan 
Hamelin 
Baudin 
b) 
70 
60 
50 
40 
30 
20 
10 
0 
Leaf area (cm2) 
c) 
70 
60 
50 
40 
30 
20 
10 
0 
MS T1 T2 T3 T4 
Leaf area (cm2) 
Figure 4. Leaf areas for individual tillers of Yagan, Hamelin and Baudin grown in a controlled 
environment room for 39 days at plant densities of: (a) 1 plant/pot, (b) 3 plants/pot and 
(c) 5 plants/pot. (O’Callaghan 2006)
a) 
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
1.4 
1.2 
1 
0.8 
0.6 
0.4 
0.2 
0 
Dry Weight (g) 
Yagan 
Hamelin 
Baudin 
b) 
1.4 
1.2 
1 
0.8 
0.6 
0.4 
0.2 
0 
Dry Weight (g) 
c) 
1.4 
1.2 
1 
0.8 
0.6 
0.4 
0.2 
0 
MS T1 T2 T3 T4 T5 T6 T7 T8 ST TT 
Dry Weight (g) 
Figure 6. Dry weights at 62 days of main stem, individual primary tillers, all secondary tiller and all tertiary 
tillers, at: (a) 1 plant/pot, (b) 3 plants/pot and (c) 5 plants/pot. (O’Callaghan 2006)
Competition in Monoculture-based Crop 
Aim to minimise inter-plant competition in like 
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
sward 
But for competitive advantage vs. weeds, may 
select more competitive types, with high 
projected LAI, e.g. Mahsuri rice 
Leads to considerations of architectural design for 
intercrops, e.g. maize-peanut 
Consider concepts, 
then look at examples
In a Mixture look for Mutual Advantage 
Contrasting architecture or time sequence 
Access resources from different zones 
One partner with special attribute to help other 
e.g. P acquisition, N fixation, deep roots 
Commensualism and helping each other 
Include perennial crops in diverse systems 
e.g. Wade 2014 in FAO Workshop 
SCHOOL OF AGRICULTURAL & WINE SCIENCES
Mixtures with Multiple Roles 
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
Intercrop or relay cropping: 
harvest one for grain then the other later, 
or graze now then allow to set grain later etc. 
Role for trees, growth patterns offset, resources 
drawn from different layers at different times 
Grazing with provision of supplements e.g. hay, 
silage, molasses/urea, salt, water 
Pasture with regular livestock grazing
Perennial Grass and Annual Forage Legume 
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
A B 
A. A mixed forage pasture sward containing a perennial grass (Phalaris 
aquatica) and self-regenerating annual legume species (Trifolium 
subterraneum, T. michelianum and T. glanduliferum) 
B. Gland clover (T. glandiferum); A self-regenerating annual forage legume 
released commercially in Australia for its superior insect pest resistance 
Hayes et al 2014
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
(a) Permanent perennial grain crop 
polyculture 
(b) Perennial cereal- annual legume mixture 
(c) Relay or companion cropping into 
perennial cereal 
Depictions of alternative 
farming systems involving 
permanent perennial cereals 
Bell 2014
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
Year 1 -3 – Perennial cereal phase 
Grain legume Cereal or non-legume 
crop 
Legume pasture 
Rebuilding soil N and water reserves 
Creating dry soil buffer 
Years 4-6 – Annual crop phase 
Wet soil 
Dry soil 
(d) Phase perennial crop-annual crop/pasture rotation 
Bell 2014
Pigeon peas provide intercropping opportunities for farmers. Because of their 
slow growth rates in the first year, they do not compete aggressively with 
faster growing legumes such as groundnuts. As they regrow in the second 
season, they can compete with more aggressive crops such as maize. 
Snapp 2014 
SCHOOL OF AGRICULTURAL & WINE SCIENCES
Intercropping of pigeon pea and groundnut 
Taller, slower growing pigeon peas complement lower- and faster-growing 
groundnuts, which are ready for harvest several weeks before pigeon peas 
mature 
Glover 2014 
SCHOOL OF AGRICULTURAL & WINE SCIENCES
Shrubby pigeon pea intercrops (SP-Intercrop) and shrubby pigeon pea rotations 
(SP-Rotation) decrease fertiliser requirements; improve the value cost ratio 
(VCR), fertiliser use efficiency, and protein yields; increase carbon and nitrogen 
assimilation and phosphorus availability; and provide greater cover than 
monoculture maize Snapp 2014 
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
Resource Efficiency
Ecological tradeoff for seven different crop rotations as cropped land in 
Watonwan County, Minnesota, is changed from 100% prairie to 100% of 
each of the different crop rotations 
corn-pennycress 
-wheat 
Curves indicate the tradeoff between relative sediment loss and relative 
economic value of each rotation (Runck et al 2014) 
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
Ecological consequences 
soy-wheat 
bare 
soil 
corn or corn-soy
Ecosystem services under 3 land-use regimes 
Reganold 2014 
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
Transformative Systems
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
Coconut-oil palm-crop 
Muhammed and Serkan 2014
Faidherbia albida – Zea mays 
Maize understory while tree is dormant 
Maize in wet season, forage in dry season 
Dixon & Garrity 2014 
[Also mention Leakey 2014 – participatory agro-forestry] 
SCHOOL OF AGRICULTURAL & WINE SCIENCES
Issues for Selection in Mixed Systems 
Need to evaluate together in target systems 
Must be managed in accord with intended use 
Evaluate not individually, but by combined benefits 
Successful phenotype for mixture may not be best 
individually, e.g. like spaced vs. sward plants 
SCHOOL OF AGRICULTURAL & WINE SCIENCES
Issues of Co-Evolution and Joint Selection 
Species for grazing evolved with their grazer 
Plants developed adaptations to allow them to be 
grazed but still survive and reproduce, e.g. 
growing points sheltered in grasses 
Animals adapted mouthparts, digestive flora in gut, 
tolerance to certain plant chemicals, foraging 
ability 
Co-evolution in natural environments as a model 
for selection in managed environments 
SCHOOL OF AGRICULTURAL & WINE SCIENCES
Improvement in a Co-Evolutionary Context 
Seek plants with improved capture of resources, 
better survival and growth under stress and 
grazing 
Animals with greater growth efficiency, better 
foragers, able to move, reproductive success 
Management changes to assist – availability of 
water, supplement for supporting young, 
provision of shelter 
Issue is system performance and resilience 
SCHOOL OF AGRICULTURAL & WINE SCIENCES
Used examples from diverse systems 
Annuals, perennials, mixtures, perennial crops 
Need to develop and include perennial crops for 
improved system performance and stability 
Underused crops 
Tef, Setaria and short duration grasses and grains 
Sunflower esp. wild types; Lepidium (field cress) 
Bambatse groundnut, other pulses, Trees 
Select from germplasm vs. full breeding program 
SCHOOL OF AGRICULTURAL & WINE SCIENCES
Conclusions 
Challenges in mixtures, especially with livestock 
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
– more complex 
But similar principles apply 
Understand characteristics of target population of 
environments 
Select for systems performance and stability 
Care for agroecosystem fitness, system sustainability, 
system intensification, ecosystems services, food 
security and nutrition 
Requires systems understanding – environmental health, 
resource dynamics, resilience, sustainable 
performance
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
Reference 
Batello C, Wade LJ, Cox TS, Pogna N, Bozzini A, 
Chopiany J 2014. Perennial Crops for Food 
Security. Proceedings of the FAO Expert 
Workshop, FAO, Rome, Italy 390pp 
Acknowledgements 
Many colleagues for useful discussions
Mean overlap of flowering periods of native legumes at 
Seton, MB, for 2010-2013 
SCHOOL OF AGRICULTURAL & WINE SCIENCES 
Astragalus agrestis Douglas ex G. Don 
Vicia americana Muhl. ex Willd. 
Pediomelum esculentum 
Dalea purpurea Vent. 
Oxytropis splendens Douglas ex Hook. 
Lathyrus ochroleucus Hook. 
Dalea candida Michx. ex Willd. 
120 140 160 180 200 220 240 260 
Day of the Year 
Cattani 2014 
Polyculture example
Diagrammatic 
representation of 
the cycle of land 
degradation and 
associated 
social 
deprivation 
Leakey 2014 
SCHOOL OF AGRICULTURAL & WINE SCIENCES
Diagrammatic 
representation of 
multifunctional 
agriculture and its 
goals 
Leakey 2014 
SCHOOL OF AGRICULTURAL & WINE SCIENCES
Diagrammatic 
representation 
of how the 
three steps to 
close the yield 
gap impact on 
food security, 
poverty and 
livelihoods 
(sustainable 
intensification) 
1 = Improved 
fallows (N fix) 
2 = Particip 
domestication 
3 = Value add 
and process 
Leakey 2014 
SCHOOL OF AGRICULTURAL & WINE SCIENCES

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Agroecological approaches to breeding

  • 1. Agroecological Approaches to Breeding Professor Len Wade, lwade@csu.edu.au. Graham Centre, Charles Sturt University, Wagga Wagga, NSW 2650 Australia International Symposium on Agroecology for Food Security and Nutrition FAO Rome, 18-19 September 2014 SCHOOL OF AGRICULTURAL & WINE SCIENCES
  • 2. SCHOOL OF AGRICULTURAL & WINE SCIENCES Content Crop and system design for improved agroecological fitness Sustainable intensification, ecosystem services, and food and nutrition security Competition for resources and their allocation in contrasting agronomic systems including monoculture, mixtures, and with livestock Implications for breeding targets, selection, proof of concept
  • 3. SCHOOL OF AGRICULTURAL & WINE SCIENCES Monoculture Define growing season – start, end, resources Phenological pattern for performance and stability Key traits needed for major biotic and abiotic stress Effective phenotype with stable performance Sample or create diversity, select, test, release New crop – evaluate and release Major crop – full breeding program
  • 4. Agroecological Principles for Monoculture Resources are finite, capture when available Need to understand system dynamics for replenishment of available resources Issue of competition and phenotype expression SCHOOL OF AGRICULTURAL & WINE SCIENCES e.g. wheat Early generation spaced plants vs. advanced generation sward Recognise need for a different plant type for success in each system
  • 5. a) SCHOOL OF AGRICULTURAL & WINE SCIENCES 70 60 50 40 30 20 10 0 Leaf Area (cm2) Yagan Hamelin Baudin b) 70 60 50 40 30 20 10 0 Leaf area (cm2) c) 70 60 50 40 30 20 10 0 MS T1 T2 T3 T4 Leaf area (cm2) Figure 4. Leaf areas for individual tillers of Yagan, Hamelin and Baudin grown in a controlled environment room for 39 days at plant densities of: (a) 1 plant/pot, (b) 3 plants/pot and (c) 5 plants/pot. (O’Callaghan 2006)
  • 6. a) SCHOOL OF AGRICULTURAL & WINE SCIENCES 1.4 1.2 1 0.8 0.6 0.4 0.2 0 Dry Weight (g) Yagan Hamelin Baudin b) 1.4 1.2 1 0.8 0.6 0.4 0.2 0 Dry Weight (g) c) 1.4 1.2 1 0.8 0.6 0.4 0.2 0 MS T1 T2 T3 T4 T5 T6 T7 T8 ST TT Dry Weight (g) Figure 6. Dry weights at 62 days of main stem, individual primary tillers, all secondary tiller and all tertiary tillers, at: (a) 1 plant/pot, (b) 3 plants/pot and (c) 5 plants/pot. (O’Callaghan 2006)
  • 7. Competition in Monoculture-based Crop Aim to minimise inter-plant competition in like SCHOOL OF AGRICULTURAL & WINE SCIENCES sward But for competitive advantage vs. weeds, may select more competitive types, with high projected LAI, e.g. Mahsuri rice Leads to considerations of architectural design for intercrops, e.g. maize-peanut Consider concepts, then look at examples
  • 8. In a Mixture look for Mutual Advantage Contrasting architecture or time sequence Access resources from different zones One partner with special attribute to help other e.g. P acquisition, N fixation, deep roots Commensualism and helping each other Include perennial crops in diverse systems e.g. Wade 2014 in FAO Workshop SCHOOL OF AGRICULTURAL & WINE SCIENCES
  • 9. Mixtures with Multiple Roles SCHOOL OF AGRICULTURAL & WINE SCIENCES Intercrop or relay cropping: harvest one for grain then the other later, or graze now then allow to set grain later etc. Role for trees, growth patterns offset, resources drawn from different layers at different times Grazing with provision of supplements e.g. hay, silage, molasses/urea, salt, water Pasture with regular livestock grazing
  • 10. Perennial Grass and Annual Forage Legume SCHOOL OF AGRICULTURAL & WINE SCIENCES A B A. A mixed forage pasture sward containing a perennial grass (Phalaris aquatica) and self-regenerating annual legume species (Trifolium subterraneum, T. michelianum and T. glanduliferum) B. Gland clover (T. glandiferum); A self-regenerating annual forage legume released commercially in Australia for its superior insect pest resistance Hayes et al 2014
  • 11. SCHOOL OF AGRICULTURAL & WINE SCIENCES (a) Permanent perennial grain crop polyculture (b) Perennial cereal- annual legume mixture (c) Relay or companion cropping into perennial cereal Depictions of alternative farming systems involving permanent perennial cereals Bell 2014
  • 12. SCHOOL OF AGRICULTURAL & WINE SCIENCES Year 1 -3 – Perennial cereal phase Grain legume Cereal or non-legume crop Legume pasture Rebuilding soil N and water reserves Creating dry soil buffer Years 4-6 – Annual crop phase Wet soil Dry soil (d) Phase perennial crop-annual crop/pasture rotation Bell 2014
  • 13. Pigeon peas provide intercropping opportunities for farmers. Because of their slow growth rates in the first year, they do not compete aggressively with faster growing legumes such as groundnuts. As they regrow in the second season, they can compete with more aggressive crops such as maize. Snapp 2014 SCHOOL OF AGRICULTURAL & WINE SCIENCES
  • 14. Intercropping of pigeon pea and groundnut Taller, slower growing pigeon peas complement lower- and faster-growing groundnuts, which are ready for harvest several weeks before pigeon peas mature Glover 2014 SCHOOL OF AGRICULTURAL & WINE SCIENCES
  • 15. Shrubby pigeon pea intercrops (SP-Intercrop) and shrubby pigeon pea rotations (SP-Rotation) decrease fertiliser requirements; improve the value cost ratio (VCR), fertiliser use efficiency, and protein yields; increase carbon and nitrogen assimilation and phosphorus availability; and provide greater cover than monoculture maize Snapp 2014 SCHOOL OF AGRICULTURAL & WINE SCIENCES Resource Efficiency
  • 16. Ecological tradeoff for seven different crop rotations as cropped land in Watonwan County, Minnesota, is changed from 100% prairie to 100% of each of the different crop rotations corn-pennycress -wheat Curves indicate the tradeoff between relative sediment loss and relative economic value of each rotation (Runck et al 2014) SCHOOL OF AGRICULTURAL & WINE SCIENCES Ecological consequences soy-wheat bare soil corn or corn-soy
  • 17. Ecosystem services under 3 land-use regimes Reganold 2014 SCHOOL OF AGRICULTURAL & WINE SCIENCES Transformative Systems
  • 18. SCHOOL OF AGRICULTURAL & WINE SCIENCES Coconut-oil palm-crop Muhammed and Serkan 2014
  • 19. Faidherbia albida – Zea mays Maize understory while tree is dormant Maize in wet season, forage in dry season Dixon & Garrity 2014 [Also mention Leakey 2014 – participatory agro-forestry] SCHOOL OF AGRICULTURAL & WINE SCIENCES
  • 20. Issues for Selection in Mixed Systems Need to evaluate together in target systems Must be managed in accord with intended use Evaluate not individually, but by combined benefits Successful phenotype for mixture may not be best individually, e.g. like spaced vs. sward plants SCHOOL OF AGRICULTURAL & WINE SCIENCES
  • 21. Issues of Co-Evolution and Joint Selection Species for grazing evolved with their grazer Plants developed adaptations to allow them to be grazed but still survive and reproduce, e.g. growing points sheltered in grasses Animals adapted mouthparts, digestive flora in gut, tolerance to certain plant chemicals, foraging ability Co-evolution in natural environments as a model for selection in managed environments SCHOOL OF AGRICULTURAL & WINE SCIENCES
  • 22. Improvement in a Co-Evolutionary Context Seek plants with improved capture of resources, better survival and growth under stress and grazing Animals with greater growth efficiency, better foragers, able to move, reproductive success Management changes to assist – availability of water, supplement for supporting young, provision of shelter Issue is system performance and resilience SCHOOL OF AGRICULTURAL & WINE SCIENCES
  • 23. Used examples from diverse systems Annuals, perennials, mixtures, perennial crops Need to develop and include perennial crops for improved system performance and stability Underused crops Tef, Setaria and short duration grasses and grains Sunflower esp. wild types; Lepidium (field cress) Bambatse groundnut, other pulses, Trees Select from germplasm vs. full breeding program SCHOOL OF AGRICULTURAL & WINE SCIENCES
  • 24. Conclusions Challenges in mixtures, especially with livestock SCHOOL OF AGRICULTURAL & WINE SCIENCES – more complex But similar principles apply Understand characteristics of target population of environments Select for systems performance and stability Care for agroecosystem fitness, system sustainability, system intensification, ecosystems services, food security and nutrition Requires systems understanding – environmental health, resource dynamics, resilience, sustainable performance
  • 25. SCHOOL OF AGRICULTURAL & WINE SCIENCES Reference Batello C, Wade LJ, Cox TS, Pogna N, Bozzini A, Chopiany J 2014. Perennial Crops for Food Security. Proceedings of the FAO Expert Workshop, FAO, Rome, Italy 390pp Acknowledgements Many colleagues for useful discussions
  • 26. Mean overlap of flowering periods of native legumes at Seton, MB, for 2010-2013 SCHOOL OF AGRICULTURAL & WINE SCIENCES Astragalus agrestis Douglas ex G. Don Vicia americana Muhl. ex Willd. Pediomelum esculentum Dalea purpurea Vent. Oxytropis splendens Douglas ex Hook. Lathyrus ochroleucus Hook. Dalea candida Michx. ex Willd. 120 140 160 180 200 220 240 260 Day of the Year Cattani 2014 Polyculture example
  • 27. Diagrammatic representation of the cycle of land degradation and associated social deprivation Leakey 2014 SCHOOL OF AGRICULTURAL & WINE SCIENCES
  • 28. Diagrammatic representation of multifunctional agriculture and its goals Leakey 2014 SCHOOL OF AGRICULTURAL & WINE SCIENCES
  • 29. Diagrammatic representation of how the three steps to close the yield gap impact on food security, poverty and livelihoods (sustainable intensification) 1 = Improved fallows (N fix) 2 = Particip domestication 3 = Value add and process Leakey 2014 SCHOOL OF AGRICULTURAL & WINE SCIENCES