Flow cytometry is a technique that analyzes physical and chemical characteristics of cells as they flow in a fluid stream through a beam of light. It is used for immunophenotyping, DNA and blood analysis, and diagnosis of health disorders. The main components are fluidics to transport cells, optics for excitation and detection of light, and electronics to convert light signals into data. Gating is used to select subsets of cells for further analysis. Flow cytometry has applications in clinical settings and research, such as monitoring HIV, identifying lymphocyte subsets, and diagnosing hematological cancers.
Flow Cytometry Training talks - part 1
This forms the first session of the Garvan Flow , Flow Cytometry Training course. this is a 1 1/2 day training course aimed at giving new and experienced researchers a better understanding of cytometry in medical and biological research.
Flow Cytometry Training talks - part 1
This forms the first session of the Garvan Flow , Flow Cytometry Training course. this is a 1 1/2 day training course aimed at giving new and experienced researchers a better understanding of cytometry in medical and biological research.
In this presentation, you will learn everything you need to know to get started on flow cytometry. You will learn how it works, how to choose the right antibody for FACS, how to gate, and many more.
Flow cytometry is a standard laser-based technology that is used in the detection and measurement of physical and chemical characteristics of cells or particles in a heterogeneous fluid mixture.
Flow cytometry is a technique used to detect and measure physical and chemical characteristics of a population of cells or particles. A sample containing cells or particles is suspended in a fluid and injected into the flow cytometer instrument. The sample is focused to ideally flow one cell at a time through a laser beam and the light scattered is characteristic to the cells and their components. Cells are often labeled with fluorescent markers so that light is first absorbed and then emitted in a band of wavelengths. Tens of thousands of cells can be quickly examined and the data gathered are processed by a computer.
the slideshare is been made to get knowledge about flow cytometry it's introduction, working, construction mainly components used in the flow cytometry and its application to use
In this presentation, you will learn everything you need to know to get started on flow cytometry. You will learn how it works, how to choose the right antibody for FACS, how to gate, and many more.
Flow cytometry is a standard laser-based technology that is used in the detection and measurement of physical and chemical characteristics of cells or particles in a heterogeneous fluid mixture.
Flow cytometry is a technique used to detect and measure physical and chemical characteristics of a population of cells or particles. A sample containing cells or particles is suspended in a fluid and injected into the flow cytometer instrument. The sample is focused to ideally flow one cell at a time through a laser beam and the light scattered is characteristic to the cells and their components. Cells are often labeled with fluorescent markers so that light is first absorbed and then emitted in a band of wavelengths. Tens of thousands of cells can be quickly examined and the data gathered are processed by a computer.
the slideshare is been made to get knowledge about flow cytometry it's introduction, working, construction mainly components used in the flow cytometry and its application to use
1. Flowcytometery : Principles and applications.
2. Hemocytometery: Principles and applications.
3. Chromatography: Types, Principles and application
4. Electrophoresis: Types, Principles and application
1. PCR and transillumnator: Theory and its applications to biomedical field.
2. Inoculation and isolation of Microorganism from the different type of samples.
tranSMART Community Meeting 5-7 Nov 13 - Session 3: The TraIT user stories fo...David Peyruc
tranSMART Community Meeting 5-7 Nov 13 - Session 3: The TraIT user stories for tranSMART
The TraIT user stories for tranSMART
Jan-Willem Boiten, TraIT
The Translational Research IT (TraIT) project in The Netherlands aims to organize, deploy, and manage a nationwide IT infrastructure for data and workflow management targeted specifically at the needs of translational research projects. tranSMART has been selected as the central data integration and browsing solution across the four major domains of translational research: clinical, imaging, biobanking and experimental (any-omics). For this purpose user stories from anticipated user projects are collected and mapped onto the current functionality of tranSMART. The gaps identified in this analysis are being tackled systematically as summarized in the TraIT development roadmap for tranSMART.
Computer-aided diagnostic system kinds and pulmonary nodule detection efficacyIJECEIAES
This paper summarizes the literature on computer-aided detection (CAD) systems used to identify and diagnose lung nodules in images obtained with computed tomography (CT) scanners. The importance of developing such systems lies in the fact that the process of manually detecting lung nodules is painstaking and sequential work for radiologists, as it takes a long time. Moreover, the pulmonary nodules have multiple appearances and shapes, and the large number of slices generated by the scanner creates great difficulty in accurately locating the lung nodules. The handcraft nodules detection process can be caused by messing some nodules spicily when these nodules' diameter be less than 10 mm. So, the CAD system is an essential assistant to the radiologist in this case of nodule detection, and it contributed to reducing time consumption in nodules detection; moreover, it applied more accuracy in this field. The objective of this paper is to follow up on current and previous work on lung cancer detection and lung nodule diagnosis. This literature dealt with a group of specialized systems in this field quickly and showed the methods used in them. It dealt with an emphasis on a system based on deep learning involving neural convolution networks.
Detection of lung pathology using the fractal methodIJECEIAES
Currently, the detection of pathology of lung cavities and their digitalization is one of the urgent problems of the healthcare industry in Kazakhstan. In this paper, the method of fractal analysis was considered to solve the task set. Diagnosis of lung pathology based on fractal analysis is an actively developing area of medical research. Conducted experiments on a set of clinical data confirm the effectiveness of the proposed methodology. The results obtained show that fractal analysis can be a useful tool for early detection of lung pathologies. It allows you to detect even minor changes in the structure and texture of lung tissues, which may not be obvious during visual analysis. The article deals with images of pathology of the pulmonary cavity, taken from an open data source. Based on the analysis of fractal objects, they were pre-assembled. Software algorithms for the operation of the information system for screening diagnostics have been developed. Based on the information contained in the fractal image of the lungs, mathematical models have been developed to create a diagnostic rule. A reference set of information features has been created that allows you to create algorithms for diagnosing the lungs: healthy and with pathologies of tuberculosis
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
2. DEFINITION OF FLOW CYTOMETRY?
Flow - motion Cyto - cell Metry - measure
FACS (Flourescence Activated Cell Sorting)
PURPOSE S OF FLOW CYTOMETRY
Immunophenotyping
DNA and Blood Analysis
Data Analysis
Diagnosis (Health Disorder)
THE PRINCIPLES OF FLOW CYTOMETRY
THE APPLICATIONS OF THE METHODOLOGY IN THE CLINICAL
LABORATORY
Clinical
Research
4. PRINCIPLE
• The three main subsystems-:
- Fluidics – It transport particles to the laser beam for interrogation.
- Optics – Excitation and Collection Components.
- Electronics – It convert detect lights into signals and send information to
computer. The data is stored and graphs are plotted to further analysis it.
5. The process of gating is very important
in the analysis of flow cytometry data
Gating refers to the process of selecting
a subset of the collected events for
further analysis
Subsets can continue to be gated to
generate further subsets
The process of gating simply creates a
new population
Naming subpopulations in gating is important
Siblings with the same names are not allowed,
otherwise there would be confusion
It is recommended that using duplicate names of
subpopulations within any given sample be avoided
Gating
6. WHERE CAN FLOW CYTOMETRY APPLICATION BE
FOUND?
Flow Cytometry Facilities
Mayo Clinic
Stanford School of Medicine
Unc. Sick Kids Research Clinic
in Canada
Veterinary Services
George Washington University
Medical Center
The University of Chicago
John Hopkins Medical
Research
Mayo Clinic Locations:
Minnesota , Arizona,
Wisconsin,
Georgia, Arizona, Florida,
Massachusetts
Amyloidosis
Flow cytometric immunophenotyping showed
an abnormal B-cell population expressing
CD19, CD20, dim monotypic lambda light
chains, CD23, CD5, consistent with CLL.
7. Flow Cytometer’s
Application in Clinical
And Research
Monitoring HIV—Identification and
Enumeration
of Lymphocyte Subsets
The BD Multitest™ 6-color TBNK kit is the first
and only 6-color In Vitro Diagnostic application
to provide a complete immune panel in a single
tube, saving valuable time and resources for
sample processing
8. References
BD Bioscience (2011) BD FACSCantoTM Brochure. Retrieved from
http://www.bdbiosciences.com/documents/BD_FACSCanto_II_brochure.pdf
Brown, M., & Wittwer, C. (2000, August). Flow Cytometry:
Principles and Clinical Applications in Hematology.
Retrieved September 15, 2013 from
http://www.clinchem.org/content/46/8/1221.full
Clinical Flow Wiki. (n.d.) Introduction to Flow Cytometric Analysis Retrieved from
http://www.clinicalflow.com/Cases/Introduction_to_Flow_Cytometric_Analy
sis
Evans, F. (2012). Fiber delivery systems enhance flow cytometry designs. Laser
Focus World, 48(11), 53. Retrieved from
http://web.ebscohost.com/ehost/pdfviewer/pdfviewer?sid=378fd7c5-f697-
49d2-88cf-e51f160b7b9b%40sessionmgr4&vid=4&hid=9
9. References
FlowJo - v7.6.5 Manual - Gating."FlowJo Home”. N.p. (n.d.) Retrieved from
http://www.flowjo.com/v765/en/gating.htm
Fromm, J., Thomas, B., Wood, B. (2009) Flow Cytometry Can Diagnose Classical
Hodgkin Lymphoma in Lymph Nodes with High Sensitivity and Specificity
American Journal of Clinical Pathology. Retrieved from
http://www.medscape.com/viewarticle/453271
Introduction to Flow Cytometry: A Learning Guide, (n.d.) “Stem Cell Institute Medical
School. Version 11-11032-01. University of Minnesota. Retrieved from
http://www.stemcell.umn.edu/prod/groups/med/@pub/@med/documents/as
set/med_80691.pdf
Kincaid, K. Semiconductor lasers shed new light on flow cytometry (2004). Laser
Focus World. Retrieved from
http://web.ebscohost.com/ehost/pdfviewer/pdfviewer?sid=378fd7c5-f697-
49d2-88cf-e51f160b7b9b%40sessionmgr4&vid=4&hid=9
10. References
Lookfordiagnosis (n.d.) Flow Cytometry. Retrieved from
http://www.lookfordiagnosis.com/mesh_info.php?term=Flow+Cytometry
&lang=1
Mayo Foundation for Medical Education and Research. (1995-2013) Flow
Cytometry Immunonphenotyping. Retrieved from
http://www.mayomedicallaboratories.com/articles/hottopics/transcripts/
2009/2009-12a-amyloidosis/12a-17.html
Overview-BD (n.d.) Medical Supplies, Devices and Technology. Retrieved from
http://www.bd.com/videos/bdb/training/itf/overview/player.html
Science Art. (2008). Retrieved September 15, 2013, from
http://vesuvias.wordpress.com/page/2/
Shen, H., Tang, Y. (2012) Rapid Detection of Neoplastic Cells in Serous Cavity
Effusions in Children with Flow Cytometry Immunophenotyping. Retrieved
from http://www.ncbi.nlm.nih.gov/pubmed/22288605
11. References
Science Art. (2008). Retrieved September 15, 2013, from
http://vesuvias.wordpress.com/page/2/
Shen, H., Tang, Y. (2012) Rapid Detection of Neoplastic Cells in Serous
Cavity Effusions in Children with Flow Cytometry Immunophenotyping.
Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/22288605
Editor's Notes
Evans, F. (2012). Fiber delivery systems enhance flow cytometry designs. Laser Focus World, 48(11), 53. Retrieved September 17, 2013 from http://web.ebscohost.com/ehost/pdfviewer/pdfviewer?sid=378fd7c5-f697-49d2-88cf-e51f160b7b9b%40sessionmgr4&vid=4&hid=9
Fromm, J., Thomas, B., Wood, B. (2009). Flow Cytometry Can Diagnose Classical Hodgkin Lymphoma in Lymph Nodes with High Sensitivity and Specificity. American Journal of Clinical Pathology. Retrieved Septemebr 17, 2013 from http://www.medscape.com/viewarticle/453271
Kincaid, K. (2004). Semiconductor lasers shed new light on flow cytometry. Laser Focus World. Laser Focus World. Retrieved September 17, 2013 from http://web.ebscohost.com/ehost/pdfviewer/pdfviewer?sid=378fd7c5-f697-49d2-88cf-e51f160b7b9b%40sessionmgr4&vid=4&hid=9
1. Brown, M., & Wittwer, C. (2000, August). Flow Cytometry:
Principles and Clinical Applications in Hematology.
Retrieved September 15, 2013 from
http://www.clinchem.org/content/46/8/1221.full
2. Science Art. (2008). Retrieved September 15, 2013, from http://vesuvias.wordpress.com/page/2/
Overview-BD (nd)Medical Supplies, Devices and Technology. Retrieved on September 15, 2013 from http://www.bd.com/videos/bdb/training/itf/overview/player.html
2. Lookfordiagnosis (n.d.) Flow Cytometry. Retrieved from http://www.lookfordiagnosis.com/mesh_info.php?term=Flow+Cytometry&lang=1
2. Lookfordiagnosis (nd) Flow Cytometry. Retrieved on September 15, 2013, from
http://www.lookfordiagnosis.com/mesh_info.php?term=Flow+Cytometry&lang=1
FlowJo - v7.6.5 Manual - Gating."FlowJo Home”. N.p. (n.d.) Retrieved from http://www.flowjo.com/v765/en/gating.htm
Clinical Flow Wiki. (n.d.) Introduction to Flow Cytometric Analysis Retrieved from http://www.clinicalflow.com/Cases/Introduction_to_Flow_Cytometric_Analysis
2. Introduction to Flow Cytometry: A Learning Guide ." Stem Cell Institute Medical School. Version 11-11032-01. University of Minnesota , n.d. Web. 17 Sept. 2013. http://www.stemcell.umn.edu/prod/groups/med/@pub/@med/documents/asset/med_80691.pdf
3. Introduction to Flow Cytometric Analysis - Clinical Flow Wiki." Clinical Flow Wiki - Clinical Flow Wiki. N.p., n.d. Web. 17 Sept. 2013. http://www.clinicalflow.com/Cases/Introduction_to_Flow_Cytometric_Analysis
Mayo Foundation for Medical Education and Research. (1995-2013) Flow Cytometry Immunonphenotyping. Retrieved on September 16, 2013 from http://www.mayomedicallaboratories.com/articles/hottopics/transcripts/2009/2009-12a-amyloidosis/12a-17.html
BD Bioscience (2011) BD FACSCantoTM Brochure. Retrieved on September 15, 2013 from
http://www.bdbiosciences.com/documents/BD_FACSCanto_II_brochure.pdf