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Sirtuins, Epigenetics
and longevity
• Dr. David Sinclair – “Eat less”.
• Longevity or Vitality Genes – Sirtuins, TOR, AMPK.
• Evolutionary advantage: Slow the aging process and postpone
reproduction in times of food scarcity
Sirtuins
• Founding member: Silencing information regulator 2 (Sir2) in
Saccharomyces cerevisiae.
• Caloric Restriction - 20-50% less calorie intake.
• NAD+ dependent Histone deacetylase.
• 7 Sir2 homologs, SirT1-7 in mammals with different enzymatic
activity, target proteins, localization.
Sirtuins
• Target proteins:
Histones, p53, tubulin,
PEPCK, etc
• Enzymatic activity:
Deacetylation, ADP-
ribosylation,
Demalonylation,
Desuccinylation.
• 7 Sirtuins divided into 4
classes
(Ref: Rajabi et al., 2018)
Sirtuin Class Localisation Activity Targets
SIRT1 I Nucleus, Cytosol Deacetylation
Notch, NF-kappaB,
PGC1alpha, FOXO1
SIRT2 I Cytosol Deacetylation
Tubulin, PEPCK,
FOXO1
SIRT3 I Mitochondria Deacetylation
GDH, LCAD, SOD2,
IDH2
SIRT4 II Mitochondria ADP-ribosylation GDH
SIRT5 III Mitochondria
Deacetylation, demalonylation,
desuccinylation
CPS1
SIRT6 IV Nucleus Deacetylation, ADP-ribosylation H3K9, H3K56
SIRT7 IV Nucleolus Deacetylation TS genes
(Houtkooper et al., 2012
Sirtuin 6 (SIRT6)
• Class IV sirtuin.
• Nuclear localization signal.
• 1000x less deacetylation
activity than SirT1.
• Deacetylation target –
H3K9/K56
• Weak ADP-ribosylation
activity with PARP1 as
known substrate.
• Histone 3, CtIP, PARP1,
H1Falpha, GCN5.
(Ref: Van Meter et al., 2011,
Kugel & Mostoslavsky, 2014)
GLUCONEOGENESIS ↓
(Ref: Ye et al., 2017
Kugel & Mostoslavsky, 2014)
SIRT1 SIRT6 SIRT3 SIRT2 SIRT7
FH regulation
Repression
of genes
Repression
of TS genes
H3K56 H3K18
H2A/H2B H3K9
DNA
repair/maintenance
Apoptosis
inhibition
H4K16
DNA repair
(Ref: Bosch-Presegué &
Vaquero, 2015)
CR,
Sirtuins
and
longevity ↓ATP
AMPK
P
P
P
↑NAD+
SIRT
↑ATP
AMPK
↓NAD+
SIRT
Cell survival, DNA repair,
autophagy, gene and
metabolism regulation,
genome stability
Ageing
Cell senescence, ROS,
genome instability
Caloric restriction, exercise, stress
NAD+
supplements
Excess calorie, sedentary lifestyle
Sirtfoods
CD38
References
• Bosch-Presegué, L., & Vaquero, A. (2015). Sirtuin-dependent epigenetic regulation in the
maintenance of genome integrity. The FEBS Journal, 282(9), 1745–1767.
https://doi.org/10.1111/febs.13053
• Garrett, R. H., & Grisham, C. M. (Eds.). (2008). Metabolic Integration and Organ Specialization.
In Biochemistry (4th ed., pp. 856–858). Brooks/Cole.
• Houtkooper, R. H., Pirinen, E., & Auwerx, J. (2012). Sirtuins as regulators of metabolism and
healthspan. Nature Reviews. Molecular Cell Biology, 13(4), 225–238.
https://doi.org/10.1038/nrm3293
• Kugel, S., & Mostoslavsky, R. (2014). Chromatin and beyond: the multitasking roles for SIRT6. Trends
in Biochemical Sciences, 39(2), 72–81. https://doi.org/10.1016/j.tibs.2013.12.002
• (Rajabi et al., 2018)
Rajabi, N., Galleano, I., Madsen, A. S., & Olsen, C. A. (2018). Targeting sirtuins: Substrate specificity
and inhibitor design. Progress in Molecular Biology and Translational Science, 154, 25–69.
https://doi.org/10.1016/bs.pmbts.2017.11.003
• Van Meter, M., Mao, Z., Gorbunova, V., & Seluanov, A. (2011). Repairing split ends: SIRT6, mono-ADP
ribosylation and DNA repair. Aging, 3(9), 829–835. https://doi.org/10.18632/aging.100389
• Ye, X., Li, M., Hou, T., Gao, T., Zhu, W.-G., & Yang, Y. (2017). Sirtuins in glucose and lipid
metabolism. Oncotarget, 8(1), 1845–1859. https://doi.org/10.18632/oncotarget.12157
Eat less or drink wine

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Sirtuins, epigenetics and longevity

  • 2. • Dr. David Sinclair – “Eat less”. • Longevity or Vitality Genes – Sirtuins, TOR, AMPK. • Evolutionary advantage: Slow the aging process and postpone reproduction in times of food scarcity
  • 3. Sirtuins • Founding member: Silencing information regulator 2 (Sir2) in Saccharomyces cerevisiae. • Caloric Restriction - 20-50% less calorie intake. • NAD+ dependent Histone deacetylase. • 7 Sir2 homologs, SirT1-7 in mammals with different enzymatic activity, target proteins, localization.
  • 4. Sirtuins • Target proteins: Histones, p53, tubulin, PEPCK, etc • Enzymatic activity: Deacetylation, ADP- ribosylation, Demalonylation, Desuccinylation. • 7 Sirtuins divided into 4 classes (Ref: Rajabi et al., 2018)
  • 5. Sirtuin Class Localisation Activity Targets SIRT1 I Nucleus, Cytosol Deacetylation Notch, NF-kappaB, PGC1alpha, FOXO1 SIRT2 I Cytosol Deacetylation Tubulin, PEPCK, FOXO1 SIRT3 I Mitochondria Deacetylation GDH, LCAD, SOD2, IDH2 SIRT4 II Mitochondria ADP-ribosylation GDH SIRT5 III Mitochondria Deacetylation, demalonylation, desuccinylation CPS1 SIRT6 IV Nucleus Deacetylation, ADP-ribosylation H3K9, H3K56 SIRT7 IV Nucleolus Deacetylation TS genes (Houtkooper et al., 2012
  • 6. Sirtuin 6 (SIRT6) • Class IV sirtuin. • Nuclear localization signal. • 1000x less deacetylation activity than SirT1. • Deacetylation target – H3K9/K56 • Weak ADP-ribosylation activity with PARP1 as known substrate. • Histone 3, CtIP, PARP1, H1Falpha, GCN5. (Ref: Van Meter et al., 2011, Kugel & Mostoslavsky, 2014)
  • 7. GLUCONEOGENESIS ↓ (Ref: Ye et al., 2017 Kugel & Mostoslavsky, 2014)
  • 8. SIRT1 SIRT6 SIRT3 SIRT2 SIRT7 FH regulation Repression of genes Repression of TS genes H3K56 H3K18 H2A/H2B H3K9 DNA repair/maintenance Apoptosis inhibition H4K16 DNA repair (Ref: Bosch-Presegué & Vaquero, 2015)
  • 9. CR, Sirtuins and longevity ↓ATP AMPK P P P ↑NAD+ SIRT ↑ATP AMPK ↓NAD+ SIRT Cell survival, DNA repair, autophagy, gene and metabolism regulation, genome stability Ageing Cell senescence, ROS, genome instability Caloric restriction, exercise, stress NAD+ supplements Excess calorie, sedentary lifestyle Sirtfoods CD38
  • 10. References • Bosch-Presegué, L., & Vaquero, A. (2015). Sirtuin-dependent epigenetic regulation in the maintenance of genome integrity. The FEBS Journal, 282(9), 1745–1767. https://doi.org/10.1111/febs.13053 • Garrett, R. H., & Grisham, C. M. (Eds.). (2008). Metabolic Integration and Organ Specialization. In Biochemistry (4th ed., pp. 856–858). Brooks/Cole. • Houtkooper, R. H., Pirinen, E., & Auwerx, J. (2012). Sirtuins as regulators of metabolism and healthspan. Nature Reviews. Molecular Cell Biology, 13(4), 225–238. https://doi.org/10.1038/nrm3293 • Kugel, S., & Mostoslavsky, R. (2014). Chromatin and beyond: the multitasking roles for SIRT6. Trends in Biochemical Sciences, 39(2), 72–81. https://doi.org/10.1016/j.tibs.2013.12.002 • (Rajabi et al., 2018) Rajabi, N., Galleano, I., Madsen, A. S., & Olsen, C. A. (2018). Targeting sirtuins: Substrate specificity and inhibitor design. Progress in Molecular Biology and Translational Science, 154, 25–69. https://doi.org/10.1016/bs.pmbts.2017.11.003 • Van Meter, M., Mao, Z., Gorbunova, V., & Seluanov, A. (2011). Repairing split ends: SIRT6, mono-ADP ribosylation and DNA repair. Aging, 3(9), 829–835. https://doi.org/10.18632/aging.100389 • Ye, X., Li, M., Hou, T., Gao, T., Zhu, W.-G., & Yang, Y. (2017). Sirtuins in glucose and lipid metabolism. Oncotarget, 8(1), 1845–1859. https://doi.org/10.18632/oncotarget.12157
  • 11. Eat less or drink wine