SlideShare a Scribd company logo
AMYLOID OLIGOMERS
AND FUNCTIONAL AMYLOIDS
LE THI KHANH NGHIA
Student ID: 2017310896
1
ALZHEIMER’S DISEASE (AD)
PROTEIN-MISFOLDING DISEASES
FUNCTIONAL AMYLOIDS
FROM BACTERIA TO HUMAN
THE FIRST STEPS
FOR REPRESENTATIVE AMYLOID SIMULATION
2
• Prevalence and incidence
ALZHEIMER’S DISEASE (AD)
- By 2005:
+ 24.6 million people had dementia
+ 4.6 million new cases arising annually
+ ~70% of these cases were attributed to AD
- China and Western Pacific
exhibited the highest prevalence of
dementia. Follwed by Western
Europe and North America.
- The incidence rate for dementia
increased exponentially with
age, with the most notable rise
occurring through the seventh
and eighth
=> The prevalence and incidence
rates for AD also increase
exponentially with age.
3
- Mechanism causing AD
ALZHEIMER’S DISEASE (AD)
4
PROTEIN-MISFOLDING DISEASES
Mechanism
???
A representative simulation
of amyloid for studying aggregation mechanism
5
FUNCTIONAL AMYLOIDS FROM BACTERIA TO HUMAN
• E. coli is the most understandable bacteria
• Produce protein in the short-term
• Biochemical and structural properties as
eukaryotic amyloid fibers
6
THE FIRST STEPS FOR REPRESENTATIVE AMYLOID SIMULATION
CURLI
• The major proteinaceous component of
complex extracellular matrix produced by
Enterobacteriaceae, involved in adhesion
to surfaces, cell aggregation, and biofilm
formation.
• A part of a growing number functional
amyloid with biochemical and structural
properties as eukaryotic amyloid fibers.
(nonbraching and β-sheet rich fibers)
7
Congo Red (CR) Assays to Assess Curli production
* CR assay on YESCA CR Agar
* Post-staining CR assay
• Wild-type curli-producing
stain red.
• Curli defective mutants
are usually pink or white.
• E. coli mutants with hyper
curli production
sometimes stain dark red.
8
9
Curli biogenesis
Operon Composition Function of gene
CsgA 30% of
sequence
identify
Major structural subunit
CsgB Nucleator protein
CsgD Center of the curli regulatory network
CsgG Required for stability and secretion of CsgA, CsgB
CsgE, CsgF
Interact with CsgG, required for efficient curli
assembly
- Genes impotant
for curli formation
in E. Coli.
Purification of Curli subunits
Method Non-denaturing Denaturing
• Advantage
o Avoid denaturation of target
protein
o Less time-consuming
o Cell can be stored in a
long term
• Disadvantage
o Time-consuming
o Supertanant cannot be
stored > 1 day
o Low yield
• Stimulation
10
Purification of Curli subunits
* Non-denaturing Purification of CsgA or truncated CsgB
• Expression strain: LSR12/pMC1/pMC3
• This strain resistant to Ampicilin (Amp) and Chloramphenicol (Cm)
• CsgA (truncated CsgB) can be collected by Affinity Chromatography
LSR12
CsgDEFG csgBA
deletion mutation
in E. coli C600
pMC1
cloning csgG into the NcoI and BamHI
sites of pTrc99A plasmid
pMC3
cloning full-length C-terminal His6-
tagged CsgA into the NdeI and EcoRI
sites of pHL3 plasmid.
• Protein experession is induced with IPTG
11
Purification of Curli subunits
* Denaturing Purification of CsgA or CsgB (bacterial lysate)
• Expression strain: NEB C2566/pNH11 (CsgA)
NEB C2566/pAN1 (CsgB)
• This strain resistant to Ampicilin (Amp) and Chloramphenicol (Cm)
• Use GdnHCl to lyse the cell
• Collect protein by Affinity Chromatography
NEB C2566: T7 expression strain of E. coli
pAN1
plasmid made by cloning C-
terminal His6-tagged CsgB
without Sec signal sequence
into pET11d vector
pNH11
plasmid made by
cloning C-terminal
His6-tagged CsgA
without Sec signal
sequence into pET11d
vector
12
Benefits of Curli subunits
Purified
Subunits
Mechanism of aggregation
Biofilm formation
Function for adhesion
(surface interaction)
Polymerization, programmable biofilm etc
13
14
THANKS
FOR YOUR ATTENTION!
15
REFERENCES
• Dobson, Christopher M. "The Amyloid Phenomenon and Its Links with
Human Disease." Cold Spring Harbor Perspectives in Biology (2017):
a023648.
• Fowler, Douglas M., et al. "Functional amyloid–from bacteria to
humans." Trends in biochemical sciences 32.5 (2007): 217-224.
• Zhou, Yizhou, et al. "Experimental manipulation of the microbial
functional amyloid called curli." Bacterial Cell Surfaces: Methods and
Protocols (2013): 53-75.
• Reitz, Christiane, Carol Brayne, and Richard Mayeux. "Epidemiology of
Alzheimer disease." Nature Reviews Neurology 7.3 (2011): 137-152.
• Barnhart, Michelle M., and Matthew R. Chapman. "Curli biogenesis and
function." Annu. Rev. Microbiol. 60 (2006): 131-147.
16

More Related Content

What's hot

Dr. nahla farahat immunophenotyping of multiple myeloma
Dr. nahla farahat   immunophenotyping of multiple myeloma Dr. nahla farahat   immunophenotyping of multiple myeloma
Dr. nahla farahat immunophenotyping of multiple myeloma
Hitham Esam
 
G6 Pd Deficiency
G6 Pd DeficiencyG6 Pd Deficiency
G6 Pd Deficiency
bnavabi
 
IMWG updates on plasma cell dyscrasias
IMWG updates on plasma cell dyscrasias IMWG updates on plasma cell dyscrasias
IMWG updates on plasma cell dyscrasias
Ekta Jajodia
 
01.13.09: Chronic Myeloid Leukemia and other Myeloproliferative Neoplasms (MPNs)
01.13.09: Chronic Myeloid Leukemia and other Myeloproliferative Neoplasms (MPNs)01.13.09: Chronic Myeloid Leukemia and other Myeloproliferative Neoplasms (MPNs)
01.13.09: Chronic Myeloid Leukemia and other Myeloproliferative Neoplasms (MPNs)
Open.Michigan
 
G6pd
G6pdG6pd
Chronic Myeloid Leukemia
Chronic Myeloid LeukemiaChronic Myeloid Leukemia
Chronic Myeloid Leukemia
docaneesh
 
G6pd
G6pdG6pd
G6pd
S. Ismat
 
Cml
CmlCml
Monoclonal Immunoglobulin Disorders
Monoclonal Immunoglobulin DisordersMonoclonal Immunoglobulin Disorders
Monoclonal Immunoglobulin Disorders
Shahin Hameed
 
Molecular Genetics in MPN
Molecular Genetics in MPNMolecular Genetics in MPN
Molecular Genetics in MPN
ARUN KUMAR
 
5-2. C3 glomerulonephritis and Dense Deposit Disease. Francesco Emma (eng)
5-2. C3 glomerulonephritis and Dense Deposit Disease. Francesco Emma (eng)5-2. C3 glomerulonephritis and Dense Deposit Disease. Francesco Emma (eng)
5-2. C3 glomerulonephritis and Dense Deposit Disease. Francesco Emma (eng)
KidneyOrgRu
 
Poster
PosterPoster
Association of Angiotensin-converting Enzyme Gene Insertion/ Deletion Polymor...
Association of Angiotensin-converting Enzyme Gene Insertion/ Deletion Polymor...Association of Angiotensin-converting Enzyme Gene Insertion/ Deletion Polymor...
Association of Angiotensin-converting Enzyme Gene Insertion/ Deletion Polymor...
Ibrahim khidir ibrahim osman
 
Flow cytometry` dr nidhi
Flow cytometry` dr nidhiFlow cytometry` dr nidhi
Flow cytometry` dr nidhi
Dr Nidhi Rai Gupta
 
Thrombophilia - Animal Models
 Thrombophilia - Animal Models  Thrombophilia - Animal Models
Thrombophilia - Animal Models
Michael M
 
Complement system
Complement systemComplement system
Complement system
Mahendra Swamy
 
Cml ppt new 1
Cml ppt new 1Cml ppt new 1
Cml ppt new 1
Kishore Chandra Korada
 
G6PD deficiency.ppt
G6PD deficiency.pptG6PD deficiency.ppt
G6PD deficiency.ppt
AbdulKaderSouid
 
C3 glomerulopathy
C3 glomerulopathyC3 glomerulopathy
C3 glomerulopathy
mukkukiran
 
chronic myeloid leukemia
chronic myeloid leukemiachronic myeloid leukemia
chronic myeloid leukemia
Srinivas Kinjarapu
 

What's hot (20)

Dr. nahla farahat immunophenotyping of multiple myeloma
Dr. nahla farahat   immunophenotyping of multiple myeloma Dr. nahla farahat   immunophenotyping of multiple myeloma
Dr. nahla farahat immunophenotyping of multiple myeloma
 
G6 Pd Deficiency
G6 Pd DeficiencyG6 Pd Deficiency
G6 Pd Deficiency
 
IMWG updates on plasma cell dyscrasias
IMWG updates on plasma cell dyscrasias IMWG updates on plasma cell dyscrasias
IMWG updates on plasma cell dyscrasias
 
01.13.09: Chronic Myeloid Leukemia and other Myeloproliferative Neoplasms (MPNs)
01.13.09: Chronic Myeloid Leukemia and other Myeloproliferative Neoplasms (MPNs)01.13.09: Chronic Myeloid Leukemia and other Myeloproliferative Neoplasms (MPNs)
01.13.09: Chronic Myeloid Leukemia and other Myeloproliferative Neoplasms (MPNs)
 
G6pd
G6pdG6pd
G6pd
 
Chronic Myeloid Leukemia
Chronic Myeloid LeukemiaChronic Myeloid Leukemia
Chronic Myeloid Leukemia
 
G6pd
G6pdG6pd
G6pd
 
Cml
CmlCml
Cml
 
Monoclonal Immunoglobulin Disorders
Monoclonal Immunoglobulin DisordersMonoclonal Immunoglobulin Disorders
Monoclonal Immunoglobulin Disorders
 
Molecular Genetics in MPN
Molecular Genetics in MPNMolecular Genetics in MPN
Molecular Genetics in MPN
 
5-2. C3 glomerulonephritis and Dense Deposit Disease. Francesco Emma (eng)
5-2. C3 glomerulonephritis and Dense Deposit Disease. Francesco Emma (eng)5-2. C3 glomerulonephritis and Dense Deposit Disease. Francesco Emma (eng)
5-2. C3 glomerulonephritis and Dense Deposit Disease. Francesco Emma (eng)
 
Poster
PosterPoster
Poster
 
Association of Angiotensin-converting Enzyme Gene Insertion/ Deletion Polymor...
Association of Angiotensin-converting Enzyme Gene Insertion/ Deletion Polymor...Association of Angiotensin-converting Enzyme Gene Insertion/ Deletion Polymor...
Association of Angiotensin-converting Enzyme Gene Insertion/ Deletion Polymor...
 
Flow cytometry` dr nidhi
Flow cytometry` dr nidhiFlow cytometry` dr nidhi
Flow cytometry` dr nidhi
 
Thrombophilia - Animal Models
 Thrombophilia - Animal Models  Thrombophilia - Animal Models
Thrombophilia - Animal Models
 
Complement system
Complement systemComplement system
Complement system
 
Cml ppt new 1
Cml ppt new 1Cml ppt new 1
Cml ppt new 1
 
G6PD deficiency.ppt
G6PD deficiency.pptG6PD deficiency.ppt
G6PD deficiency.ppt
 
C3 glomerulopathy
C3 glomerulopathyC3 glomerulopathy
C3 glomerulopathy
 
chronic myeloid leukemia
chronic myeloid leukemiachronic myeloid leukemia
chronic myeloid leukemia
 

Similar to review for advanced biochemistry course

ACUTE LEUKAEMIAS IN ADULTS.pptx
ACUTE LEUKAEMIAS IN ADULTS.pptxACUTE LEUKAEMIAS IN ADULTS.pptx
ACUTE LEUKAEMIAS IN ADULTS.pptx
Kemi Adaramola
 
Molecular studies in cns tumors
Molecular studies in cns tumorsMolecular studies in cns tumors
Molecular studies in cns tumors
Dr.Amrita Rakesh
 
ROLE OF FLOW CYTOMETRY IN LEUKEMIAS
ROLE OF FLOW CYTOMETRY IN LEUKEMIASROLE OF FLOW CYTOMETRY IN LEUKEMIAS
ROLE OF FLOW CYTOMETRY IN LEUKEMIAS
Hajra Mehdi
 
MULTIIPLE MYELOMA.pptx
MULTIIPLE MYELOMA.pptxMULTIIPLE MYELOMA.pptx
MULTIIPLE MYELOMA.pptx
BIMALESHYADAV2
 
PHSC 620 Presentation Final
PHSC 620 Presentation FinalPHSC 620 Presentation Final
PHSC 620 Presentation Final
Lindsey Muller
 
Multiple myeloma DR NIDHI RAI
Multiple myeloma DR NIDHI RAIMultiple myeloma DR NIDHI RAI
Multiple myeloma DR NIDHI RAI
Dr Nidhi Rai Gupta
 
Julián Cerón (IDIBELL)
Julián Cerón (IDIBELL)Julián Cerón (IDIBELL)
Chakraborty APPI Mumbai 140615
Chakraborty APPI Mumbai 140615Chakraborty APPI Mumbai 140615
Chakraborty APPI Mumbai 140615
Dr.Sutirtha Chakraborty,MD,FACB
 
Congenital myasthenic syndromes_24th jan'20.pptx
Congenital myasthenic syndromes_24th jan'20.pptxCongenital myasthenic syndromes_24th jan'20.pptx
Congenital myasthenic syndromes_24th jan'20.pptx
Zubair Sarkar
 
Waldenstrӧm macroglobulinemia
Waldenstrӧm macroglobulinemiaWaldenstrӧm macroglobulinemia
Waldenstrӧm macroglobulinemia
Sudipta Naskar
 
Multiple myeloma dr bikal
Multiple myeloma dr bikalMultiple myeloma dr bikal
Multiple myeloma dr bikal
Bikal Lamichhane
 
Acute Lymphoblastic Leukemia
Acute Lymphoblastic LeukemiaAcute Lymphoblastic Leukemia
Acute Lymphoblastic Leukemia
DrAyush Garg
 
Chronic Myelogenous Leukemia
Chronic Myelogenous LeukemiaChronic Myelogenous Leukemia
Chronic Myelogenous Leukemia
Aneesh Bhandary
 
Plasma cell disorders ppt
Plasma cell disorders pptPlasma cell disorders ppt
Plasma cell disorders ppt
Archer Review USMLE and NCLEX
 
Thrombotic Microangiopathies and AntiPhospholipid Syndrome
Thrombotic Microangiopathies and AntiPhospholipid SyndromeThrombotic Microangiopathies and AntiPhospholipid Syndrome
Thrombotic Microangiopathies and AntiPhospholipid Syndrome
Richard McCrory
 
leukemia (1).pptx
leukemia (1).pptxleukemia (1).pptx
leukemia (1).pptx
PriyaA811347
 
Minimal Residual Disease in leukaemia andhematological malignancies
Minimal Residual Disease in leukaemia andhematological malignanciesMinimal Residual Disease in leukaemia andhematological malignancies
Minimal Residual Disease in leukaemia andhematological malignancies
sadiya97
 
Hematology slide/ Pediatric leukemia
Hematology slide/ Pediatric leukemiaHematology slide/ Pediatric leukemia
Hematology slide/ Pediatric leukemia
Dexter Baral
 
POAG
POAGPOAG
POAG
Lhacha
 
Platinum salts presentation
Platinum salts presentationPlatinum salts presentation
Platinum salts presentation
madurai
 

Similar to review for advanced biochemistry course (20)

ACUTE LEUKAEMIAS IN ADULTS.pptx
ACUTE LEUKAEMIAS IN ADULTS.pptxACUTE LEUKAEMIAS IN ADULTS.pptx
ACUTE LEUKAEMIAS IN ADULTS.pptx
 
Molecular studies in cns tumors
Molecular studies in cns tumorsMolecular studies in cns tumors
Molecular studies in cns tumors
 
ROLE OF FLOW CYTOMETRY IN LEUKEMIAS
ROLE OF FLOW CYTOMETRY IN LEUKEMIASROLE OF FLOW CYTOMETRY IN LEUKEMIAS
ROLE OF FLOW CYTOMETRY IN LEUKEMIAS
 
MULTIIPLE MYELOMA.pptx
MULTIIPLE MYELOMA.pptxMULTIIPLE MYELOMA.pptx
MULTIIPLE MYELOMA.pptx
 
PHSC 620 Presentation Final
PHSC 620 Presentation FinalPHSC 620 Presentation Final
PHSC 620 Presentation Final
 
Multiple myeloma DR NIDHI RAI
Multiple myeloma DR NIDHI RAIMultiple myeloma DR NIDHI RAI
Multiple myeloma DR NIDHI RAI
 
Julián Cerón (IDIBELL)
Julián Cerón (IDIBELL)Julián Cerón (IDIBELL)
Julián Cerón (IDIBELL)
 
Chakraborty APPI Mumbai 140615
Chakraborty APPI Mumbai 140615Chakraborty APPI Mumbai 140615
Chakraborty APPI Mumbai 140615
 
Congenital myasthenic syndromes_24th jan'20.pptx
Congenital myasthenic syndromes_24th jan'20.pptxCongenital myasthenic syndromes_24th jan'20.pptx
Congenital myasthenic syndromes_24th jan'20.pptx
 
Waldenstrӧm macroglobulinemia
Waldenstrӧm macroglobulinemiaWaldenstrӧm macroglobulinemia
Waldenstrӧm macroglobulinemia
 
Multiple myeloma dr bikal
Multiple myeloma dr bikalMultiple myeloma dr bikal
Multiple myeloma dr bikal
 
Acute Lymphoblastic Leukemia
Acute Lymphoblastic LeukemiaAcute Lymphoblastic Leukemia
Acute Lymphoblastic Leukemia
 
Chronic Myelogenous Leukemia
Chronic Myelogenous LeukemiaChronic Myelogenous Leukemia
Chronic Myelogenous Leukemia
 
Plasma cell disorders ppt
Plasma cell disorders pptPlasma cell disorders ppt
Plasma cell disorders ppt
 
Thrombotic Microangiopathies and AntiPhospholipid Syndrome
Thrombotic Microangiopathies and AntiPhospholipid SyndromeThrombotic Microangiopathies and AntiPhospholipid Syndrome
Thrombotic Microangiopathies and AntiPhospholipid Syndrome
 
leukemia (1).pptx
leukemia (1).pptxleukemia (1).pptx
leukemia (1).pptx
 
Minimal Residual Disease in leukaemia andhematological malignancies
Minimal Residual Disease in leukaemia andhematological malignanciesMinimal Residual Disease in leukaemia andhematological malignancies
Minimal Residual Disease in leukaemia andhematological malignancies
 
Hematology slide/ Pediatric leukemia
Hematology slide/ Pediatric leukemiaHematology slide/ Pediatric leukemia
Hematology slide/ Pediatric leukemia
 
POAG
POAGPOAG
POAG
 
Platinum salts presentation
Platinum salts presentationPlatinum salts presentation
Platinum salts presentation
 

Recently uploaded

Sexuality - Issues, Attitude and Behaviour - Applied Social Psychology - Psyc...
Sexuality - Issues, Attitude and Behaviour - Applied Social Psychology - Psyc...Sexuality - Issues, Attitude and Behaviour - Applied Social Psychology - Psyc...
Sexuality - Issues, Attitude and Behaviour - Applied Social Psychology - Psyc...
PsychoTech Services
 
在线办理(salfor毕业证书)索尔福德大学毕业证毕业完成信一模一样
在线办理(salfor毕业证书)索尔福德大学毕业证毕业完成信一模一样在线办理(salfor毕业证书)索尔福德大学毕业证毕业完成信一模一样
在线办理(salfor毕业证书)索尔福德大学毕业证毕业完成信一模一样
vluwdy49
 
Farming systems analysis: what have we learnt?.pptx
Farming systems analysis: what have we learnt?.pptxFarming systems analysis: what have we learnt?.pptx
Farming systems analysis: what have we learnt?.pptx
Frédéric Baudron
 
MICROBIAL INTERACTION PPT/ MICROBIAL INTERACTION AND THEIR TYPES // PLANT MIC...
MICROBIAL INTERACTION PPT/ MICROBIAL INTERACTION AND THEIR TYPES // PLANT MIC...MICROBIAL INTERACTION PPT/ MICROBIAL INTERACTION AND THEIR TYPES // PLANT MIC...
MICROBIAL INTERACTION PPT/ MICROBIAL INTERACTION AND THEIR TYPES // PLANT MIC...
ABHISHEK SONI NIMT INSTITUTE OF MEDICAL AND PARAMEDCIAL SCIENCES , GOVT PG COLLEGE NOIDA
 
Gadgets for management of stored product pests_Dr.UPR.pdf
Gadgets for management of stored product pests_Dr.UPR.pdfGadgets for management of stored product pests_Dr.UPR.pdf
Gadgets for management of stored product pests_Dr.UPR.pdf
PirithiRaju
 
Compexometric titration/Chelatorphy titration/chelating titration
Compexometric titration/Chelatorphy titration/chelating titrationCompexometric titration/Chelatorphy titration/chelating titration
Compexometric titration/Chelatorphy titration/chelating titration
Vandana Devesh Sharma
 
ESA/ACT Science Coffee: Diego Blas - Gravitational wave detection with orbita...
ESA/ACT Science Coffee: Diego Blas - Gravitational wave detection with orbita...ESA/ACT Science Coffee: Diego Blas - Gravitational wave detection with orbita...
ESA/ACT Science Coffee: Diego Blas - Gravitational wave detection with orbita...
Advanced-Concepts-Team
 
Anti-Universe And Emergent Gravity and the Dark Universe
Anti-Universe And Emergent Gravity and the Dark UniverseAnti-Universe And Emergent Gravity and the Dark Universe
Anti-Universe And Emergent Gravity and the Dark Universe
Sérgio Sacani
 
(June 12, 2024) Webinar: Development of PET theranostics targeting the molecu...
(June 12, 2024) Webinar: Development of PET theranostics targeting the molecu...(June 12, 2024) Webinar: Development of PET theranostics targeting the molecu...
(June 12, 2024) Webinar: Development of PET theranostics targeting the molecu...
Scintica Instrumentation
 
Evidence of Jet Activity from the Secondary Black Hole in the OJ 287 Binary S...
Evidence of Jet Activity from the Secondary Black Hole in the OJ 287 Binary S...Evidence of Jet Activity from the Secondary Black Hole in the OJ 287 Binary S...
Evidence of Jet Activity from the Secondary Black Hole in the OJ 287 Binary S...
Sérgio Sacani
 
Direct Seeded Rice - Climate Smart Agriculture
Direct Seeded Rice - Climate Smart AgricultureDirect Seeded Rice - Climate Smart Agriculture
Direct Seeded Rice - Climate Smart Agriculture
International Food Policy Research Institute- South Asia Office
 
AJAY KUMAR NIET GreNo Guava Project File.pdf
AJAY KUMAR NIET GreNo Guava Project File.pdfAJAY KUMAR NIET GreNo Guava Project File.pdf
AJAY KUMAR NIET GreNo Guava Project File.pdf
AJAY KUMAR
 
Methods of grain storage Structures in India.pdf
Methods of grain storage Structures in India.pdfMethods of grain storage Structures in India.pdf
Methods of grain storage Structures in India.pdf
PirithiRaju
 
GBSN - Biochemistry (Unit 6) Chemistry of Proteins
GBSN - Biochemistry (Unit 6) Chemistry of ProteinsGBSN - Biochemistry (Unit 6) Chemistry of Proteins
GBSN - Biochemistry (Unit 6) Chemistry of Proteins
Areesha Ahmad
 
LEARNING TO LIVE WITH LAWS OF MOTION .pptx
LEARNING TO LIVE WITH LAWS OF MOTION .pptxLEARNING TO LIVE WITH LAWS OF MOTION .pptx
LEARNING TO LIVE WITH LAWS OF MOTION .pptx
yourprojectpartner05
 
Sciences of Europe journal No 142 (2024)
Sciences of Europe journal No 142 (2024)Sciences of Europe journal No 142 (2024)
Sciences of Europe journal No 142 (2024)
Sciences of Europe
 
CLASS 12th CHEMISTRY SOLID STATE ppt (Animated)
CLASS 12th CHEMISTRY SOLID STATE ppt (Animated)CLASS 12th CHEMISTRY SOLID STATE ppt (Animated)
CLASS 12th CHEMISTRY SOLID STATE ppt (Animated)
eitps1506
 
Immersive Learning That Works: Research Grounding and Paths Forward
Immersive Learning That Works: Research Grounding and Paths ForwardImmersive Learning That Works: Research Grounding and Paths Forward
Immersive Learning That Works: Research Grounding and Paths Forward
Leonel Morgado
 
Travis Hills of MN is Making Clean Water Accessible to All Through High Flux ...
Travis Hills of MN is Making Clean Water Accessible to All Through High Flux ...Travis Hills of MN is Making Clean Water Accessible to All Through High Flux ...
Travis Hills of MN is Making Clean Water Accessible to All Through High Flux ...
Travis Hills MN
 
Describing and Interpreting an Immersive Learning Case with the Immersion Cub...
Describing and Interpreting an Immersive Learning Case with the Immersion Cub...Describing and Interpreting an Immersive Learning Case with the Immersion Cub...
Describing and Interpreting an Immersive Learning Case with the Immersion Cub...
Leonel Morgado
 

Recently uploaded (20)

Sexuality - Issues, Attitude and Behaviour - Applied Social Psychology - Psyc...
Sexuality - Issues, Attitude and Behaviour - Applied Social Psychology - Psyc...Sexuality - Issues, Attitude and Behaviour - Applied Social Psychology - Psyc...
Sexuality - Issues, Attitude and Behaviour - Applied Social Psychology - Psyc...
 
在线办理(salfor毕业证书)索尔福德大学毕业证毕业完成信一模一样
在线办理(salfor毕业证书)索尔福德大学毕业证毕业完成信一模一样在线办理(salfor毕业证书)索尔福德大学毕业证毕业完成信一模一样
在线办理(salfor毕业证书)索尔福德大学毕业证毕业完成信一模一样
 
Farming systems analysis: what have we learnt?.pptx
Farming systems analysis: what have we learnt?.pptxFarming systems analysis: what have we learnt?.pptx
Farming systems analysis: what have we learnt?.pptx
 
MICROBIAL INTERACTION PPT/ MICROBIAL INTERACTION AND THEIR TYPES // PLANT MIC...
MICROBIAL INTERACTION PPT/ MICROBIAL INTERACTION AND THEIR TYPES // PLANT MIC...MICROBIAL INTERACTION PPT/ MICROBIAL INTERACTION AND THEIR TYPES // PLANT MIC...
MICROBIAL INTERACTION PPT/ MICROBIAL INTERACTION AND THEIR TYPES // PLANT MIC...
 
Gadgets for management of stored product pests_Dr.UPR.pdf
Gadgets for management of stored product pests_Dr.UPR.pdfGadgets for management of stored product pests_Dr.UPR.pdf
Gadgets for management of stored product pests_Dr.UPR.pdf
 
Compexometric titration/Chelatorphy titration/chelating titration
Compexometric titration/Chelatorphy titration/chelating titrationCompexometric titration/Chelatorphy titration/chelating titration
Compexometric titration/Chelatorphy titration/chelating titration
 
ESA/ACT Science Coffee: Diego Blas - Gravitational wave detection with orbita...
ESA/ACT Science Coffee: Diego Blas - Gravitational wave detection with orbita...ESA/ACT Science Coffee: Diego Blas - Gravitational wave detection with orbita...
ESA/ACT Science Coffee: Diego Blas - Gravitational wave detection with orbita...
 
Anti-Universe And Emergent Gravity and the Dark Universe
Anti-Universe And Emergent Gravity and the Dark UniverseAnti-Universe And Emergent Gravity and the Dark Universe
Anti-Universe And Emergent Gravity and the Dark Universe
 
(June 12, 2024) Webinar: Development of PET theranostics targeting the molecu...
(June 12, 2024) Webinar: Development of PET theranostics targeting the molecu...(June 12, 2024) Webinar: Development of PET theranostics targeting the molecu...
(June 12, 2024) Webinar: Development of PET theranostics targeting the molecu...
 
Evidence of Jet Activity from the Secondary Black Hole in the OJ 287 Binary S...
Evidence of Jet Activity from the Secondary Black Hole in the OJ 287 Binary S...Evidence of Jet Activity from the Secondary Black Hole in the OJ 287 Binary S...
Evidence of Jet Activity from the Secondary Black Hole in the OJ 287 Binary S...
 
Direct Seeded Rice - Climate Smart Agriculture
Direct Seeded Rice - Climate Smart AgricultureDirect Seeded Rice - Climate Smart Agriculture
Direct Seeded Rice - Climate Smart Agriculture
 
AJAY KUMAR NIET GreNo Guava Project File.pdf
AJAY KUMAR NIET GreNo Guava Project File.pdfAJAY KUMAR NIET GreNo Guava Project File.pdf
AJAY KUMAR NIET GreNo Guava Project File.pdf
 
Methods of grain storage Structures in India.pdf
Methods of grain storage Structures in India.pdfMethods of grain storage Structures in India.pdf
Methods of grain storage Structures in India.pdf
 
GBSN - Biochemistry (Unit 6) Chemistry of Proteins
GBSN - Biochemistry (Unit 6) Chemistry of ProteinsGBSN - Biochemistry (Unit 6) Chemistry of Proteins
GBSN - Biochemistry (Unit 6) Chemistry of Proteins
 
LEARNING TO LIVE WITH LAWS OF MOTION .pptx
LEARNING TO LIVE WITH LAWS OF MOTION .pptxLEARNING TO LIVE WITH LAWS OF MOTION .pptx
LEARNING TO LIVE WITH LAWS OF MOTION .pptx
 
Sciences of Europe journal No 142 (2024)
Sciences of Europe journal No 142 (2024)Sciences of Europe journal No 142 (2024)
Sciences of Europe journal No 142 (2024)
 
CLASS 12th CHEMISTRY SOLID STATE ppt (Animated)
CLASS 12th CHEMISTRY SOLID STATE ppt (Animated)CLASS 12th CHEMISTRY SOLID STATE ppt (Animated)
CLASS 12th CHEMISTRY SOLID STATE ppt (Animated)
 
Immersive Learning That Works: Research Grounding and Paths Forward
Immersive Learning That Works: Research Grounding and Paths ForwardImmersive Learning That Works: Research Grounding and Paths Forward
Immersive Learning That Works: Research Grounding and Paths Forward
 
Travis Hills of MN is Making Clean Water Accessible to All Through High Flux ...
Travis Hills of MN is Making Clean Water Accessible to All Through High Flux ...Travis Hills of MN is Making Clean Water Accessible to All Through High Flux ...
Travis Hills of MN is Making Clean Water Accessible to All Through High Flux ...
 
Describing and Interpreting an Immersive Learning Case with the Immersion Cub...
Describing and Interpreting an Immersive Learning Case with the Immersion Cub...Describing and Interpreting an Immersive Learning Case with the Immersion Cub...
Describing and Interpreting an Immersive Learning Case with the Immersion Cub...
 

review for advanced biochemistry course

  • 1. AMYLOID OLIGOMERS AND FUNCTIONAL AMYLOIDS LE THI KHANH NGHIA Student ID: 2017310896 1
  • 2. ALZHEIMER’S DISEASE (AD) PROTEIN-MISFOLDING DISEASES FUNCTIONAL AMYLOIDS FROM BACTERIA TO HUMAN THE FIRST STEPS FOR REPRESENTATIVE AMYLOID SIMULATION 2
  • 3. • Prevalence and incidence ALZHEIMER’S DISEASE (AD) - By 2005: + 24.6 million people had dementia + 4.6 million new cases arising annually + ~70% of these cases were attributed to AD - China and Western Pacific exhibited the highest prevalence of dementia. Follwed by Western Europe and North America. - The incidence rate for dementia increased exponentially with age, with the most notable rise occurring through the seventh and eighth => The prevalence and incidence rates for AD also increase exponentially with age. 3
  • 4. - Mechanism causing AD ALZHEIMER’S DISEASE (AD) 4
  • 5. PROTEIN-MISFOLDING DISEASES Mechanism ??? A representative simulation of amyloid for studying aggregation mechanism 5
  • 6. FUNCTIONAL AMYLOIDS FROM BACTERIA TO HUMAN • E. coli is the most understandable bacteria • Produce protein in the short-term • Biochemical and structural properties as eukaryotic amyloid fibers 6
  • 7. THE FIRST STEPS FOR REPRESENTATIVE AMYLOID SIMULATION CURLI • The major proteinaceous component of complex extracellular matrix produced by Enterobacteriaceae, involved in adhesion to surfaces, cell aggregation, and biofilm formation. • A part of a growing number functional amyloid with biochemical and structural properties as eukaryotic amyloid fibers. (nonbraching and β-sheet rich fibers) 7
  • 8. Congo Red (CR) Assays to Assess Curli production * CR assay on YESCA CR Agar * Post-staining CR assay • Wild-type curli-producing stain red. • Curli defective mutants are usually pink or white. • E. coli mutants with hyper curli production sometimes stain dark red. 8
  • 9. 9 Curli biogenesis Operon Composition Function of gene CsgA 30% of sequence identify Major structural subunit CsgB Nucleator protein CsgD Center of the curli regulatory network CsgG Required for stability and secretion of CsgA, CsgB CsgE, CsgF Interact with CsgG, required for efficient curli assembly - Genes impotant for curli formation in E. Coli.
  • 10. Purification of Curli subunits Method Non-denaturing Denaturing • Advantage o Avoid denaturation of target protein o Less time-consuming o Cell can be stored in a long term • Disadvantage o Time-consuming o Supertanant cannot be stored > 1 day o Low yield • Stimulation 10
  • 11. Purification of Curli subunits * Non-denaturing Purification of CsgA or truncated CsgB • Expression strain: LSR12/pMC1/pMC3 • This strain resistant to Ampicilin (Amp) and Chloramphenicol (Cm) • CsgA (truncated CsgB) can be collected by Affinity Chromatography LSR12 CsgDEFG csgBA deletion mutation in E. coli C600 pMC1 cloning csgG into the NcoI and BamHI sites of pTrc99A plasmid pMC3 cloning full-length C-terminal His6- tagged CsgA into the NdeI and EcoRI sites of pHL3 plasmid. • Protein experession is induced with IPTG 11
  • 12. Purification of Curli subunits * Denaturing Purification of CsgA or CsgB (bacterial lysate) • Expression strain: NEB C2566/pNH11 (CsgA) NEB C2566/pAN1 (CsgB) • This strain resistant to Ampicilin (Amp) and Chloramphenicol (Cm) • Use GdnHCl to lyse the cell • Collect protein by Affinity Chromatography NEB C2566: T7 expression strain of E. coli pAN1 plasmid made by cloning C- terminal His6-tagged CsgB without Sec signal sequence into pET11d vector pNH11 plasmid made by cloning C-terminal His6-tagged CsgA without Sec signal sequence into pET11d vector 12
  • 13. Benefits of Curli subunits Purified Subunits Mechanism of aggregation Biofilm formation Function for adhesion (surface interaction) Polymerization, programmable biofilm etc 13
  • 14. 14
  • 16. REFERENCES • Dobson, Christopher M. "The Amyloid Phenomenon and Its Links with Human Disease." Cold Spring Harbor Perspectives in Biology (2017): a023648. • Fowler, Douglas M., et al. "Functional amyloid–from bacteria to humans." Trends in biochemical sciences 32.5 (2007): 217-224. • Zhou, Yizhou, et al. "Experimental manipulation of the microbial functional amyloid called curli." Bacterial Cell Surfaces: Methods and Protocols (2013): 53-75. • Reitz, Christiane, Carol Brayne, and Richard Mayeux. "Epidemiology of Alzheimer disease." Nature Reviews Neurology 7.3 (2011): 137-152. • Barnhart, Michelle M., and Matthew R. Chapman. "Curli biogenesis and function." Annu. Rev. Microbiol. 60 (2006): 131-147. 16