This document describes a study using wavelet transform to enhance contrast in mammographic images of a phantom. The methodology involved developing a mammographic phantom with anatomical features, acquiring images using a digital mammography system, preprocessing the images using Gaussian filtering, enhancing the images using biorthogonal 2.8 wavelet filtering, and having observers interpret and score the original and enhanced images in a receiver operating characteristic analysis. The results showed that wavelet transform enhancement improved detection of micronodules but did not significantly improve detection of nodules or fibrils compared to the original images. Wavelet transform was found to reduce noise and improve contrast.
Development and Implementation of VLSI Reconfigurable Architecture for Gabor ...Dr. Amarjeet Singh
The Gabor filter is a very effective tool in visual
search approaches and multimedia applications. This filter
provides high resolution in time-frequency domains and thus
finds use in object recognition, character recognition and
pattern recognition applications. Medical Image analysis
using image processing algorithms is one of the best ways of
diagnosing diseases inside human body. The Gabor wavelets
resemble the visual cortex cell operation of mammalian
brains and hence are best suited for biological image analysis.
A Tonsillitis detection system is proposed here using Gabor
filtering approach. This system detects the presence of
Tonsillitis from the tonsils images. A suitable VLSI
architecture for the implementation of the Gabor filter was
modeled in Verilog using Xilinx tool and simulated using the
tonsils test images. The proposed system was successful in
detecting the presence of Tonsillitis from the diseased tonsils
image. The complete system was then synthesized and
implemented on FPGA Artix 7. The design was capable of
operating at a maximum frequency of 394.563 MHz.
NIR Three dimensional imaging of breast model using f-DOT Nagendra Babu
NIR three dimensional optical imaging of breast model using f-DOT using f-DOT with target specified contrast agent.
Three dimensional mathematical modeling of DOT,f-DOT.
Development and Implementation of VLSI Reconfigurable Architecture for Gabor ...Dr. Amarjeet Singh
The Gabor filter is a very effective tool in visual
search approaches and multimedia applications. This filter
provides high resolution in time-frequency domains and thus
finds use in object recognition, character recognition and
pattern recognition applications. Medical Image analysis
using image processing algorithms is one of the best ways of
diagnosing diseases inside human body. The Gabor wavelets
resemble the visual cortex cell operation of mammalian
brains and hence are best suited for biological image analysis.
A Tonsillitis detection system is proposed here using Gabor
filtering approach. This system detects the presence of
Tonsillitis from the tonsils images. A suitable VLSI
architecture for the implementation of the Gabor filter was
modeled in Verilog using Xilinx tool and simulated using the
tonsils test images. The proposed system was successful in
detecting the presence of Tonsillitis from the diseased tonsils
image. The complete system was then synthesized and
implemented on FPGA Artix 7. The design was capable of
operating at a maximum frequency of 394.563 MHz.
NIR Three dimensional imaging of breast model using f-DOT Nagendra Babu
NIR three dimensional optical imaging of breast model using f-DOT using f-DOT with target specified contrast agent.
Three dimensional mathematical modeling of DOT,f-DOT.
AN OPTIMAL SOLUTION FOR IMAGE EDGE DETECTION PROBLEM USING SIMPLIFIED GABOR W...IJCSEIT Journal
Edge detection plays a vital role in computer vision and image processing. Edge of the image is one of the
most significant features which are mainly used for image analyzing process. An efficient algorithm for
extracting the edge features of images using simplified version of Gabor Wavelet is proposed in this paper.
Conventional Gabor Wavelet is widely used for edge detection applications. Due do the high computational
complexity of conventional Gabor Wavelet, this may not be used for real time application. Simplified Gabor
wavelet based approach is highly effective at detecting both the location and orientation of edges. The
results proved that the performance of proposed Simplified version of Gabor wavelet is superior to
conventional Gabor Wavelet, other edge detection algorithm and other wavelet based approach. The
performance of the proposed method is proved with the help of FOM, PSNR and Average run time.
BRAIN TUMOR MRI IMAGE SEGMENTATION AND DETECTION IN IMAGE PROCESSINGDharshika Shreeganesh
Image processing is an active research area in which medical image processing is a highly challenging field. Medical imaging
techniques are used to image the inner portions of the human body for medical diagnosis. Brain tumor is a serious life altering
disease condition. Image segmentation plays a significant role in image processing as it helps in the extraction of suspicious regions
from the medical images. In this paper we have proposed segmentation of brain MRI image using K-means clustering algorithm
followed by morphological filtering which avoids the misclustered regions that can inevitably be formed after segmentation of the brain MRI image for detection of tumor location.
International Journal of Engineering Research and Applications (IJERA) is an open access online peer reviewed international journal that publishes research and review articles in the fields of Computer Science, Neural Networks, Electrical Engineering, Software Engineering, Information Technology, Mechanical Engineering, Chemical Engineering, Plastic Engineering, Food Technology, Textile Engineering, Nano Technology & science, Power Electronics, Electronics & Communication Engineering, Computational mathematics, Image processing, Civil Engineering, Structural Engineering, Environmental Engineering, VLSI Testing & Low Power VLSI Design etc.
Proposed Multi-object Tracking Algorithm Using Sobel Edge Detection operatorQUESTJOURNAL
ABSTRACT:Tracking of moving objects that is called video tracking is used for measuring motion parameters and obtaining a visual record of the moving objects, it is an important area of application in image processing. In general there are two different approaches to obtain object tracking: the first is Recognition-based Tracking, and the second is the Motion-based Tracking. Video tracking system raises a wide possibility in today’s society. This system is used in various applications such as military, security, monitoring, robotic, and nowadays in dayto-day applications. However the video tracking systems still have many open problems and various research activities in a video tracking system are explores. This paper presents an algorithm for video tracking of any moving targets with the uses of contour based detection technique that depends on the sobel operator. The proposed system is suitable for indoor and outdoor applications. Our approach has the advantage of extending the applicability of tracking system and also, as presented here improves the performance of the tracker making feasible high frame rate video tracking. The goal of the tracking system is to analyze the video frames and estimate the position of a part of the input video frame (usually a moving object), our approach can detect, tracked any object more than one object and calculate the position of the moving objects. Therefore, the aim of this paper is to construct a motion tracking system for moving objects. Where, at the end of this paper, the detail outcome and result are discussed using experiments results of the proposed technique
A new Compton scattered tomography modality and its application to material n...irjes
Imaging modalities exploiting the use of Compton scattering are currently under active investigation. However, despite many innovative contributions, this topic still poses a formidable mathematical and technical challenge. Due to the very particular nature of the Compton effect, the main problem consists of obtaining the reconstruction of the object electron density. Investigations on Compton scatter imaging for biological tissues, organs and the like have been performed and studied widely over the years. However in material sciences, in particular in non-destructive evaluation and control, this type of imaging procedure is just at its beginning. In this paper, we present a new scanning process which collects scattered radiation to reconstruct the internal electronic distribution of industrial materials. As an illustration, we shall look at one of the most widely used construction material: concrete and its variants in civil engineering. The Compton scattered radiation approach is particularly efficient in imaging steel frame and voids imbedded in bulk concrete objects.
We present numerical simulation results to demonstrate the viability and performances of this imaging modality.
Keywords :- Compton scattering , Gamma-ray imaging , Non-destructive testing/evaluation (NDT/NDE), Concrete: structure and defects, Radon transform
A colour-based particle filter can achieve the goal of effective target tracking, but it has some drawbacks
when applied in the situations such as: the target and its background with similar colours, occlusion in
complex backgrounds, and deformation of the target. To deal with these problems, an improved particle
filter tracking system based on colour and moving-edge information is proposed in this study to provide
more accurate results in long-term tracking. In this system, the moving-edge information is used to ensure
that the target can be enclosed by the bounding box when encountering the problems mentioned above to
maintain the correctness of the target model. Using 100 targets in 10 video clips captured indoor and
outdoor as the test data, the experimental results show that the proposed system can track the targets
effectively to achieve an accuracy rate of 94.6%, higher than that of the colour-based particle filter
tracking system proposed by Nummiaro et al. (78.3%) [10]. For the case of occlusion, the former can also
achieve an accuracy rate of 91.8%, much higher than that of the latter (67.6%). The experimental results
reveal that using the target’s moving-edge information can enhance the accuracy and robustness of a
particle filter tracking system.
Three different classifiers for facial age estimation based on K-nearest neig...Alaa Tharwat
Abstract - The exact age estimation is often treated as a
classification problem; while it can be formulated as a
regression problem. In this article, three different classifiers based
on KNN classifier's concept for facial age estimation were
designed and developed to achieve high efficiency calculation of
facial age estimation. In the first classifier, we adopt KNN-distance
approach to calculate minimum distance between test face
image and all instances belong to the class that has the highest
number of nearest samples. Additionally, in the second
classifier a modified-KNN version was proposed and the
classifier scoring results interpolated to calculate the exact age
estimation. Furthermore, KNN-regression classifier as third
classifier that used to combine the classification and regression
approaches to improve the accuracy of the age estimation
system. Moreover, we compared age estimation errors under
two situations: case 1, age estimation is performed without
discrimination between males and females (gender unknown);
and case 2, age estimation is performed for males and females
separately (gender known). Results of experiments conducted
on well know benchmark FG-NET Database show the
effectiveness of the proposed approach.
Orientation Effectiveness in the Objects Detected Areas Using Different Types...IJCSES Journal
This paper presents a study for the orientation effectiveness on the detected areas for many sampled objects when many type of the edges detection are applied. The Canny, Laplace, Prewitt and Sobel are applied for three objects (pencils’ sharpeners with different colors). The MBR (Minimal Bounding Rectangular) are used to calculate the area in pixels, centroid and the orientation. The MR (Misclassification Ratio) is used to find the different between the edges detection techniques. The Canny edges detection technique gives the best result for the three used object using all orientations.
AN OPTIMAL SOLUTION FOR IMAGE EDGE DETECTION PROBLEM USING SIMPLIFIED GABOR W...IJCSEIT Journal
Edge detection plays a vital role in computer vision and image processing. Edge of the image is one of the
most significant features which are mainly used for image analyzing process. An efficient algorithm for
extracting the edge features of images using simplified version of Gabor Wavelet is proposed in this paper.
Conventional Gabor Wavelet is widely used for edge detection applications. Due do the high computational
complexity of conventional Gabor Wavelet, this may not be used for real time application. Simplified Gabor
wavelet based approach is highly effective at detecting both the location and orientation of edges. The
results proved that the performance of proposed Simplified version of Gabor wavelet is superior to
conventional Gabor Wavelet, other edge detection algorithm and other wavelet based approach. The
performance of the proposed method is proved with the help of FOM, PSNR and Average run time.
BRAIN TUMOR MRI IMAGE SEGMENTATION AND DETECTION IN IMAGE PROCESSINGDharshika Shreeganesh
Image processing is an active research area in which medical image processing is a highly challenging field. Medical imaging
techniques are used to image the inner portions of the human body for medical diagnosis. Brain tumor is a serious life altering
disease condition. Image segmentation plays a significant role in image processing as it helps in the extraction of suspicious regions
from the medical images. In this paper we have proposed segmentation of brain MRI image using K-means clustering algorithm
followed by morphological filtering which avoids the misclustered regions that can inevitably be formed after segmentation of the brain MRI image for detection of tumor location.
International Journal of Engineering Research and Applications (IJERA) is an open access online peer reviewed international journal that publishes research and review articles in the fields of Computer Science, Neural Networks, Electrical Engineering, Software Engineering, Information Technology, Mechanical Engineering, Chemical Engineering, Plastic Engineering, Food Technology, Textile Engineering, Nano Technology & science, Power Electronics, Electronics & Communication Engineering, Computational mathematics, Image processing, Civil Engineering, Structural Engineering, Environmental Engineering, VLSI Testing & Low Power VLSI Design etc.
Proposed Multi-object Tracking Algorithm Using Sobel Edge Detection operatorQUESTJOURNAL
ABSTRACT:Tracking of moving objects that is called video tracking is used for measuring motion parameters and obtaining a visual record of the moving objects, it is an important area of application in image processing. In general there are two different approaches to obtain object tracking: the first is Recognition-based Tracking, and the second is the Motion-based Tracking. Video tracking system raises a wide possibility in today’s society. This system is used in various applications such as military, security, monitoring, robotic, and nowadays in dayto-day applications. However the video tracking systems still have many open problems and various research activities in a video tracking system are explores. This paper presents an algorithm for video tracking of any moving targets with the uses of contour based detection technique that depends on the sobel operator. The proposed system is suitable for indoor and outdoor applications. Our approach has the advantage of extending the applicability of tracking system and also, as presented here improves the performance of the tracker making feasible high frame rate video tracking. The goal of the tracking system is to analyze the video frames and estimate the position of a part of the input video frame (usually a moving object), our approach can detect, tracked any object more than one object and calculate the position of the moving objects. Therefore, the aim of this paper is to construct a motion tracking system for moving objects. Where, at the end of this paper, the detail outcome and result are discussed using experiments results of the proposed technique
A new Compton scattered tomography modality and its application to material n...irjes
Imaging modalities exploiting the use of Compton scattering are currently under active investigation. However, despite many innovative contributions, this topic still poses a formidable mathematical and technical challenge. Due to the very particular nature of the Compton effect, the main problem consists of obtaining the reconstruction of the object electron density. Investigations on Compton scatter imaging for biological tissues, organs and the like have been performed and studied widely over the years. However in material sciences, in particular in non-destructive evaluation and control, this type of imaging procedure is just at its beginning. In this paper, we present a new scanning process which collects scattered radiation to reconstruct the internal electronic distribution of industrial materials. As an illustration, we shall look at one of the most widely used construction material: concrete and its variants in civil engineering. The Compton scattered radiation approach is particularly efficient in imaging steel frame and voids imbedded in bulk concrete objects.
We present numerical simulation results to demonstrate the viability and performances of this imaging modality.
Keywords :- Compton scattering , Gamma-ray imaging , Non-destructive testing/evaluation (NDT/NDE), Concrete: structure and defects, Radon transform
A colour-based particle filter can achieve the goal of effective target tracking, but it has some drawbacks
when applied in the situations such as: the target and its background with similar colours, occlusion in
complex backgrounds, and deformation of the target. To deal with these problems, an improved particle
filter tracking system based on colour and moving-edge information is proposed in this study to provide
more accurate results in long-term tracking. In this system, the moving-edge information is used to ensure
that the target can be enclosed by the bounding box when encountering the problems mentioned above to
maintain the correctness of the target model. Using 100 targets in 10 video clips captured indoor and
outdoor as the test data, the experimental results show that the proposed system can track the targets
effectively to achieve an accuracy rate of 94.6%, higher than that of the colour-based particle filter
tracking system proposed by Nummiaro et al. (78.3%) [10]. For the case of occlusion, the former can also
achieve an accuracy rate of 91.8%, much higher than that of the latter (67.6%). The experimental results
reveal that using the target’s moving-edge information can enhance the accuracy and robustness of a
particle filter tracking system.
Three different classifiers for facial age estimation based on K-nearest neig...Alaa Tharwat
Abstract - The exact age estimation is often treated as a
classification problem; while it can be formulated as a
regression problem. In this article, three different classifiers based
on KNN classifier's concept for facial age estimation were
designed and developed to achieve high efficiency calculation of
facial age estimation. In the first classifier, we adopt KNN-distance
approach to calculate minimum distance between test face
image and all instances belong to the class that has the highest
number of nearest samples. Additionally, in the second
classifier a modified-KNN version was proposed and the
classifier scoring results interpolated to calculate the exact age
estimation. Furthermore, KNN-regression classifier as third
classifier that used to combine the classification and regression
approaches to improve the accuracy of the age estimation
system. Moreover, we compared age estimation errors under
two situations: case 1, age estimation is performed without
discrimination between males and females (gender unknown);
and case 2, age estimation is performed for males and females
separately (gender known). Results of experiments conducted
on well know benchmark FG-NET Database show the
effectiveness of the proposed approach.
Orientation Effectiveness in the Objects Detected Areas Using Different Types...IJCSES Journal
This paper presents a study for the orientation effectiveness on the detected areas for many sampled objects when many type of the edges detection are applied. The Canny, Laplace, Prewitt and Sobel are applied for three objects (pencils’ sharpeners with different colors). The MBR (Minimal Bounding Rectangular) are used to calculate the area in pixels, centroid and the orientation. The MR (Misclassification Ratio) is used to find the different between the edges detection techniques. The Canny edges detection technique gives the best result for the three used object using all orientations.
Mid Internship Presentation over the company Jantrik Technologies Limited.
Presented in 4th year of Bachelor of Science in Software Engineering (BSSE) course at Institute of Information Technology, University of Dhaka (IIT, DU).
International Journal of Engineering Research and Applications (IJERA) is an open access online peer reviewed international journal that publishes research and review articles in the fields of Computer Science, Neural Networks, Electrical Engineering, Software Engineering, Information Technology, Mechanical Engineering, Chemical Engineering, Plastic Engineering, Food Technology, Textile Engineering, Nano Technology & science, Power Electronics, Electronics & Communication Engineering, Computational mathematics, Image processing, Civil Engineering, Structural Engineering, Environmental Engineering, VLSI Testing & Low Power VLSI Design etc.
AN AUTOMATIC SCREENING METHOD TO DETECT OPTIC DISC IN THE RETINAijait
The location of Optic Disc (OD) is of critical importance in retinal image analysis. This research paper carries out a new automated methodology to detect the optic disc (OD) in retinal images. OD detection helps the ophthalmologists to find whether the patient is affected by diabetic retinopathy or not. The proposed technique is to use line operator which gives higher percentage of detection than the already existing methods. The purpose of this project is to automatically detect the position of the OD in digital retinal fundus images. The method starts with converting the RGB image input into its LAB component. This image is smoothed using bilateral smoothing filter. Further, filtering is carried out using line operator. After which gray orientation and binary map orientation is carried out and then with the use of the resulting maximum image variation the area of the presence of the OD is found. The portions other
than OD are blurred using 2D circular convolution. On applying mathematical steps like peak classification, concentric circles design and image difference calculation, OD is detected. The proposed method was evaluated using a subset of the STARE project’s dataset and the success percentage was found
to be 96%.
AUTOMATIC TARGET DETECTION IN HYPERSPECTRAL IMAGES USING NEURAL NETWORKijistjournal
Spectral analysis of remotely sensed images provide the required information accurately even for small targets. Hence Hyperspectral imaging is being used which follows the technique of dividing images into bands. These Hyperspectral images find their applications in agriculture, biomedical, marine analysis, oil seeps detection etc. A Hyperspectral image contains many spectra, one for each individual point on the sample’s surface and in this project the required target on the Hyperspectral image is going to be detected and classified. Hyperspectral remote sensing image classification is a challenging problem because of its high dimensional inputs, many class outputs and limited availability of reference data. Therefore some powerful techniques to improve the accuracy of classification are required. The objective of our project is to reduce the dimensionality of the Hyperspectral image using Principal Component Analysis followed by classification using Neural Network. The project is to be implemented using MATLAB.
Spectral analysis of remotely sensed images provide the required information accurately even for small
targets. Hence Hyperspectral imaging is being used which follows the technique of dividing images into
bands. These Hyperspectral images find their applications in agriculture, biomedical, marine analysis, oil
seeps detection etc. A Hyperspectral image contains many spectra, one for each individual point on the
sample’s surface and in this project the required target on the Hyperspectral image is going to be detected
and classified. Hyperspectral remote sensing image classification is a challenging problem because of its
high dimensional inputs, many class outputs and limited availability of reference data. Therefore some
powerful techniques to improve the accuracy of classification are required. The objective of our project is
to reduce the dimensionality of the Hyperspectral image using Principal Component Analysis followed by
classification using Neural Network. The project is to be implemented using MATLAB.
Research Inventy : International Journal of Engineering and Science is published by the group of young academic and industrial researchers with 12 Issues per year. It is an online as well as print version open access journal that provides rapid publication (monthly) of articles in all areas of the subject such as: civil, mechanical, chemical, electronic and computer engineering as well as production and information technology. The Journal welcomes the submission of manuscripts that meet the general criteria of significance and scientific excellence. Papers will be published by rapid process within 20 days after acceptance and peer review process takes only 7 days. All articles published in Research Inventy will be peer-reviewed.
Classification of OCT Images for Detecting Diabetic Retinopathy Disease using...sipij
Optical Coherence Tomography (OCT) imaging aids in retinal abnormality detection by showing the
tomographic retinal layers. OCT images are a useful tool for detecting Diabetic Retinopathy (DR) disease
because of their capability to capture micrometer-resolution. An automated technique was introduced to
differentiate DR images from normal ones. 214 images were subjected to the experiment, of which 160
images were used for classifiers’ training, and 54 images were used for testing. Different features were
extracted to feed our classifiers, including statistical features and local binary pattern (LBP) features. The
experimental results demonstrated that our classifiers were able to discriminate DR retina from the normal
retina with Area Under the Receiver Operating Characteristic (ROC) Curve (AUC) of 100%. The retinal
OCT images have common texture patterns and using a powerful tool for pattern analysis like LBP
features has a significant impact on the achieved results. The result has better performance than previously
proposed methods in the literature.
CLASSIFICATION OF OCT IMAGES FOR DETECTING DIABETIC RETINOPATHY DISEASE USING...sipij
Optical Coherence Tomography (OCT) imaging aids in retinal abnormality detection by showing the
tomographic retinal layers. OCT images are a useful tool for detecting Diabetic Retinopathy (DR) disease
because of their capability to capture micrometer-resolution. An automated technique was introduced to
differentiate DR images from normal ones. 214 images were subjected to the experiment, of which 160
images were used for classifiers’ training, and 54 images were used for testing. Different features were
extracted to feed our classifiers, including statistical features and local binary pattern (LBP) features. The
experimental results demonstrated that our classifiers were able to discriminate DR retina from the normal
retina with Area Under the Receiver Operating Characteristic (ROC) Curve (AUC) of 100%. The retinal
OCT images have common texture patterns and using a powerful tool for pattern analysis like LBP
features has a significant impact on the achieved results. The result has better performance than previously
proposed methods in the literature.
M-FISH KARYOTYPING - A NEW APPROACH BASED ON WATERSHED TRANSFORMIJCSEIT Journal
Karyotyping is a process in which chromosomes in a dividing cell are properly stained, identified and
displayed in a standard format, which helps geneticist to study and diagnose genetic factors behind various
genetic diseases and for studying cancer. M-FISH (Multiplex Fluorescent In-Situ Hybridization) provides
color karyotyping. In this paper, an automated method for M-FISH chromosome segmentation based on
watershed transform followed by naive Bayes classification of each region using the features, mean and
standard deviation, is presented. Also, a post processing step is added to re-classify the small chromosome
segments to the neighboring larger segment for reducing the chances of misclassification. The approach
provided improved accuracy when compared to the pixel-by-pixel approach. The approach was tested on
40 images from the dataset and achieved an accuracy of 84.21 %.
Similar to Mammographic phantom images contrast enhancement (20)
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
The increased availability of biomedical data, particularly in the public domain, offers the opportunity to better understand human health and to develop effective therapeutics for a wide range of unmet medical needs. However, data scientists remain stymied by the fact that data remain hard to find and to productively reuse because data and their metadata i) are wholly inaccessible, ii) are in non-standard or incompatible representations, iii) do not conform to community standards, and iv) have unclear or highly restricted terms and conditions that preclude legitimate reuse. These limitations require a rethink on data can be made machine and AI-ready - the key motivation behind the FAIR Guiding Principles. Concurrently, while recent efforts have explored the use of deep learning to fuse disparate data into predictive models for a wide range of biomedical applications, these models often fail even when the correct answer is already known, and fail to explain individual predictions in terms that data scientists can appreciate. These limitations suggest that new methods to produce practical artificial intelligence are still needed.
In this talk, I will discuss our work in (1) building an integrative knowledge infrastructure to prepare FAIR and "AI-ready" data and services along with (2) neurosymbolic AI methods to improve the quality of predictions and to generate plausible explanations. Attention is given to standards, platforms, and methods to wrangle knowledge into simple, but effective semantic and latent representations, and to make these available into standards-compliant and discoverable interfaces that can be used in model building, validation, and explanation. Our work, and those of others in the field, creates a baseline for building trustworthy and easy to deploy AI models in biomedicine.
Bio
Dr. Michel Dumontier is the Distinguished Professor of Data Science at Maastricht University, founder and executive director of the Institute of Data Science, and co-founder of the FAIR (Findable, Accessible, Interoperable and Reusable) data principles. His research explores socio-technological approaches for responsible discovery science, which includes collaborative multi-modal knowledge graphs, privacy-preserving distributed data mining, and AI methods for drug discovery and personalized medicine. His work is supported through the Dutch National Research Agenda, the Netherlands Organisation for Scientific Research, Horizon Europe, the European Open Science Cloud, the US National Institutes of Health, and a Marie-Curie Innovative Training Network. He is the editor-in-chief for the journal Data Science and is internationally recognized for his contributions in bioinformatics, biomedical informatics, and semantic technologies including ontologies and linked data.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
2. PROBLEM STATEMENTS
Most mammographic image have very
small features, poor contrast, noisy
and wide range of anatomical
patterns.
Missed or misinterpreted by the
radiologists.
Increase false positive cases.
3. Development of the
mammographic phantom with
anatomical features.
Receiver Operating
Characteristic (ROC ) Analysis
Image acquisition
Image dataset
Image pre
processing
Image
enhancement
Image scoring
METHODOLOGY
4. METHODOLOGY
Development of the mammographic
phantom.
The mammographic phantom
template contains fibrils (nylon string),
micronodules (SiO2) and nodules
(wax) arranged randomly as an
alternative method for evaluating
imaging systems.
5. METHODOLOGY
Image Acquisition
Mammographic phantom was
located at the bottom of the
perspex (acrylic) with the same
size.
Mammographic images were
obtained using Hologic Lorad
Selenia Full Field Digital
Mammography System using AEC
function.
kVp range 28 kV to 30 kV and Rh
(Rhodium) as a filter.
6. METHODOLOGY
Image Dataset
The original raw mammographic
phantom image obtained of 29 kVp
and 124.6 mAs and 5.8 cm
compressions stored in DICOM
format.
Before pre-processing the images,
the DICOM mammographic
phantom images were converted to
TIFF (Tagged Image File Format)
format.
8. METHODOLOGY
Image Enhancement
Biorthogonal 2.8 wavelet filter
filter by decomposing the sub
band transformation in 2D
wavelet transform.
Figure: Displaying the wavelet decomposition
coefficients structures by two level
decomposition of Biorthogonal 2.8 wavelet
filter.
9. METHODOLOGY
Image Scoring
Observer interpreted mammographic
images subjectively.
Based on 5 confidence levels.
1 : definitely not present
2: probably not present
3: no decision possible
4: probably present
5: definitely present
10. METHODOLOGY : ROC ANALYSIS
The operating points based on subjective interpretation score were calculated
using Microsoft Excel.
CORROC2 software used to process the clustered data from the ROC scoring and
operating point calculation dataset.
11. METHODOLOGY: ROC ANALYSIS
ROC curve fitting and
statistical testing from
data collection to compare
two detection modalities.
Sensitivity (True Positive
Fraction)
False Positive Fraction
(FPF) = 1 – specificity
Area index of curves (Az)
were compared between
A and B by determining
the values.
values used to
determine the significance
of the differences of area.
FPF
12. RESULTS AND DISCUSSION
Detection of Nodules
Detection of Nodules
Figure : ROC curves for detection of nodules from original and wavelet transform
enhanced images.
13. RESULTS AND DISCUSSION
Detection of Fibrils
zDDetection of Fibrils
Figure : ROC curves for detection of fibrils from original and wavelet transform
enhanced images.
14. RESULTS AND DISCUSSION
Detection of Micronodules
Detection of Micronodules
Figure : ROC curves for detection of micronodules from original and wavelet
transform
enhanced images.
15. DISCUSSIONS
The values for detection of nodules, fibrils and micronodules were
larger than 0.05. The statistical data for all detection were not statically
significance.
Detection of nodules have the lowest area index values (Az < 0.97).
Wavelet transform enhancement improved the detection of
micronodules with higher sensitivity and lowest false positive rates.
Micronodules have higher mass attenuation coefficient value.
Wavelet transform enhancement could reduce noisy pixels of image and
improved image contrast.
16. Thanks to Malaysian Ministry of Science, Technology and Innovation (MOSTI) and
Universiti Teknologi Malaysia (UTM) for their financial funding through Science
Fund grant.