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1 / CONFIDENTIAL
Leslie GALLO – PharmD Student – Trainee
Jean-Dominique PIERRET – PhD – Scientific Information Expert
Competitive & Scientific Intelligence
Literature monitoring for
Pharmacovigilance
2 / CONFIDENTIAL
Weekly and Periodic monitorings
3 / CONFIDENTIAL
Weekly monitoring: Individual case safety report
• The reporting of an adverse reaction requires 4 criteria :
At least one
identifiable reporter
One single identifiable
patient
At least one suspect
medicinal product
At least one suspect
adverse reaction
Day zero is the date on which the applicant or its foreign affiliate
has received the 4 basic elements.
1/ 2/ 3/ 4/
4 / CONFIDENTIAL
Regulatory requirements for the weekly monitoring
ICH EMA FDA
Guideline ICH E2D Module VI of GVP 21CFR314.80
Monitoring frequency At least every 2 weeks Weekly Not specified
Where to look? Widely used systematic
literature reviews or
reference databases
Systematic literature
review of two widely
used reference
databases that contain
the largest number of
articles in relation to the
medicinal product
properties
Applicants can use
literature search services
(ex : Weekly Reactions)
Submission criteria - The product of the
applicant is clearly
suspected
- The product source,
brand, or trade name is
not specified
- If multiple products are
mentioned in the article,
a report should be
submitted only by the
applicant whose product
is suspected.
- The product of the
applicant is clearly
suspected
- The product source,
brand, or trade name is
not specified
- If multiple products are
mentioned in the article,
a report should be
submitted only by the
applicant whose product
is suspected.
- Same active substance as a
product marketed in the US
(even if the excipient,
dosage forms, strengths,
routes of administraction,
and indications vary)
- If multiple products are
mentioned in the article, a
report should be submitted
only by the applicant whose
product is suspected.
5 / CONFIDENTIAL
Regulatory requirements for the weekly monitoring
ICH EMA FDA
Exclusions Brand or trade name of
another company can
exclude
- Brand or trade name of another
company can exclude
- The ICSR originates in a country where
the company holds a marketing
autorisation but has never
commercialised the product
- Literature ICSRs based on an analysis
from a competent authority database
or from publicly available databases
- Literature articles which summarise
results from post-autorisation studies
Brand or trade name of
another company can
exclude
Local monitoring Subsidiaries
Comments « There is no acceptable loss of recall
when searching published literature for
pharmacovigilance. » (Module VI – GVP
EMA)
6 / CONFIDENTIAL
Periodic monitoring: DSUR
• DSUR = Development Safety Update Report
- Annual reporting on drugs under development
- Review and evaluation of pertinent safety information collected during the
reporting period
- Examines if the new safety information is in line with previous knowledge
• Contribution of the literature
- New and significant safety finding during the reporting period
- Non-clinical and clinical studies
- + information on drugs of the same class if relevant
7 / CONFIDENTIAL
Periodic monitoring: PBRER
• PBRER = Periodic Benefit-Risk Evaluation Report
- Annual periodic report on marketed products
- Objective: enable an appraisal of the product’s benefit-risk profile by analyzing:
 New safety information that could have an impact on the benefit-risk profile
(and if so, conduct an integrated B-R evaluation for approved indications)
 New efficacy information
- Examines if the new safety information is in line with previous knowledge
• Contribution of the literature
- New and significant safety finding during the reporting period
- Non-clinical and clinical studies
- Wider than searches for ICSRs : studies reporting, safety outcomes in groups of
subjects…
- + information on drugs of the same class if relevant
8 / CONFIDENTIAL
Periodic monitoring: NDA Annual Report Bibliography
• New Drug Application Annual Report
- Submission to the FDA within 60 days of the anniversary date of US approval of the application
- Includes:
 A brief summary of significant new information from the previous year that might affect the safety,
effectiveness, or labeling of the drug product
 Currently used labeling for patients and professionnals
 Distribution data and authorized generic drugs
 Chemistry, manufacturing and controls changes
 Nonclinical laboratory studies
 Clinical data
• Contribution of the literature
- Clinical information (any indications):
• Safety and effectiveness, clinical trials, clinical trial on new uses
• Biopharmaceutic, pharmacokinetic, clinical pharmacology studies;
• Epidemiologic studies or analyses of experience in a monitored serie of patients
- Nonclinical information: published reports of new toxicological findings in animal studies and in vitro
studies
9 / CONFIDENTIAL
Sources of literature for pharmacovigilance
10 / CONFIDENTIAL
Where to look for relevant articles for pharmacovigilance?
• EMA guidelines: at least 2 databases must be searched
• Databases used by the Galderma’s Competitive and Scientific Intelligence
service:
Embase.com
Which includes the references from:
11 / CONFIDENTIAL
Medline/Embase
Database Medline Embase
Focus Biomedicine and health
Broad biomedical scope with in-depth coverage of
drugs and pharmacology
Date of creation 1879 1947
Time coverage 1946 to the present 1947 to the present
Produced by US National Library of Medicine Elsevier (Netherlands)
Access Available free of charge via PubMed Through institutional subscription
Content
Journal articles, mostly from peer-reviewed
journals
Journal articles, mostly from peer-reviewed journals
+ conference abstracts since 2009
Number of records Over 23 million records from 5600 journals
published in 70 countries in about 40
languages
Over 21 million records from 6100 journals
published in 70 countries in about 40 languages.
Embase.com includes all Medline records and
reaches 32 million records from 8517 journals.
Updates Daily from Tuesday to Saturday (2000-4000
records per update)
Daily from Tuesday to Saturday (6000 records per
update)
Thesaurus MeSH Emtree
Uses
- For clinical queries and biological,
genetics topics
- Similar articles are suggested (formerly
« related articles »)
- For easy keyword search
- For drug/pharmacy topics (coverage plus
subheading options)
- To pick up recent articles and conference papers
- For great basic, natural language search
- Allows proximity operators
12 / CONFIDENTIAL
A focus on Embase
• Content
- In-depth coverage of pharmacology, toxicology, pharmaceutical
science and clinical research
• Geographic coverage
- More European journals are indexed
- A special attention is given to journals published outside
the main area (USA, Canada and Western Europe)
- But Medline has more journals indexed from the USA than Embase
• Conference abstracts
- Added on Embase, nonexistent on Medline
13 / CONFIDENTIAL
MeSH / Emtree : key figures
Thesaurus MeSH Emtree
Database Medline Embase
Number of terms 27,883 73,000 (of which more than 30,000 are drugs
and chemicals)
Number of terms per
article
10-20 3-4 major terms, and up to 50 minor terms
_______
Medline-derived articles are not directly
indexed with Emtree terms. However MeSH
terms are mapped to Emtree terms to provide
indexing compatible with Embase indexing.
Description of terms Most terms come with a short
description or definition.
No definitions used for indexing because
according to Elsevier, « natural language
terminology means that you don’t need to
know « how » terms are defined in Emtree ».
However, Emtree contains definitions from
Dorlands dictionary for most of terms.
Synonyms 213 000 310 000 (including over 190 000 drug
synonyms)
Supplementary concept
record
232 000 0
Updates Once per year Three times per year
14 / CONFIDENTIAL
MeSH / Emtree : indexing process
Medline/MeSH Embase/Emtree
Automatic indexing Nonexistent Since 2009, 3 types of articles are indexed
automatically:
- Conference abstracts
- Articles in Press
- In-Process records
Manual indexing - Federal employees or employees of
firms that have contracts with NLM
for biomedical indexing.
- An indexer must have no less than a
bachelor's degree in a biomedical
science.
- Performed by trained indexers with a
biomedical background.
- Indexers read and analyze the full text of
articles in order to identify relevant concepts,
and index them with the most specific Emtree
terms
15 / CONFIDENTIAL
A focus on Emtree
Strength Weakness
Extensive pharmaceutical coverage:
- Drugs: Emtree includes chemical names, trade
names, and laboratory/research codes as well as
generic names for more than 31,000 drugs and
chemicals, including all generic names recognised by
FDA, EMA and WHO (from 2000)
- Medical devices: over 3000 specific terms
- Large number of drug subheadings (64), including
47 routes of drug administration
For each new modified descriptor: no history of
previous indexing of this concept
- The history of a term before coming to the actual
term is unknown.
 It can be problematic to find old articles if the
way of indexing before is unknown.
Scopes notes seem to be less systematic than in the
MeSH
Limited use of subheadings
- The subheadings cannot be used for every kind of
descriptors. Subheadings can qualify drugs, diseases
or medical devices only, contrary to the MeSH with
which the descriptors can almost always be
associated to subheadings
16 / CONFIDENTIAL
Comparison Embase/Medline
17 / CONFIDENTIAL
Comparison Embase/Medline
• Several tests performed on Embase.com and PubMed
• Problematic: shall we search for Medline articles on PubMed with the MeSH or can we keep
searching for Medline articles on Embase.com with the Emtree?
• Findings:
1. Loss of subheadings during the automatic mapping of articles from Medline on
Embase.com
2. The use of some terms differs between the MeSH and the Emtree
3. False negatives on Embase.com
- Some articles weren’t indexed with adverse effects terms whereas the articles were about
adverse effects.
4. False positives on PubMed
- Some drugs were indexed with the « adverse drug reaction » subheading whereas the article did
not mention any adverse event caused by the drug in question.
Conclusion : it would be more reliable to search for Medline on PubMed with the MeSH
18 / CONFIDENTIAL
Comparison Embase/Medline : example
• PubMed
19 / CONFIDENTIAL
Comparison Embase/Medline : example
• Embase
 Loss of subheadings
20 / CONFIDENTIAL
Comparison Embase/Medline : example
• Several tests performed on Embase.com and PubMed
• Problematic: shall we search for Medline articles on PubMed with the MeSH or can we keep
searching for Medline articles on Embase.com with the Emtree?
• Findings:
1. Loss of subheadings during the automatic mapping of articles from Medline on
Embase.com
2. The use of some terms differs between the MeSH and the Emtree
3. False negatives on Embase.com
- Some articles weren’t indexed with adverse effects terms whereas the articles were about
adverse effects.
4. False positives on PubMed
- Some drugs were indexed with the « adverse drug reaction » subheading whereas the article did
not mention any adverse event caused by the drug in question.
Conclusion : it would be more reliable to search for Medline on PubMed with the MeSH
21 / CONFIDENTIAL
Comparison Embase/Medline
Subheading Emtree definition MeSH definition
« Adverse effects » dd_ae: “Adverse drug reaction” :
Used as a drug subheading to identify a
drug for which an undesired side effect is
reported (when used at therapeutic dose
ranges in humans)
AE : Used with drugs, chemicals, or biological agents in
accepted dosage - or with physical agents or manufactured
products in normal usage - when intended for diagnostic,
therapeutic, prophylactic, or anesthetic purposes.
It is used also for adverse effects or complications of
diagnostic, therapeutic, prophylactic, anesthetic, surgical, or
other procedures, but excludes contraindications for which
"contraindications" is used.
« Toxicity » dd_to: “Drug toxicity” :
Used as a drug subheading to identify a
drug or chemical that is toxic in animals
(including LD50 tests), in animal or human
cells and tissues, and in other toxicity
studies.
In humans, used to signal toxicity at non-
therapeutic dose ranges, or when lasting
damage is caused at therapeutic dose
ranges.
TO : Used with drugs and chemicals for experimental human
and animal studies of their ill effects. It includes studies to
determine the margin of safety or the reactions
accompanying administration at various dose levels. It is
used also for exposure to environmental agents. Poisoning
should be considered for life-threatening exposure to
environmental agents.
22 / CONFIDENTIAL
Comparison Embase/Medline : example
• PubMed
23 / CONFIDENTIAL
Comparison Embase/Medline : example
• Embase
24 / CONFIDENTIAL
Comparison Embase/Medline
• Several tests performed on Embase.com and PubMed
• Problematic: shall we search for Medline articles on PubMed with the MeSH or can we keep
searching for Medline articles on Embase.com with the Emtree?
• Findings:
1. Loss of subheadings during the automatic mapping of articles from Medline on
Embase.com
2. The use of some terms differs between the MeSH and the Emtree
3. False negatives on Embase.com
- Some articles weren’t indexed with adverse effects terms whereas the articles were about
adverse effects.
4. False positives on PubMed
- Some drugs were indexed with the « adverse drug reaction » subheading whereas the article did
not mention any adverse event caused by the drug in question.
Conclusion : it would be more reliable to search for Medline on PubMed with the MeSH
25 / CONFIDENTIAL
Comparison Embase/Medline : example
• PubMed
26 / CONFIDENTIAL
Comparison Embase/Medline : example
• Embase.com
 False negative
27 / CONFIDENTIAL
Comparison Embase/Medline
• Several tests performed on Embase.com and PubMed
• Problematic: shall we search for Medline articles on PubMed with the MeSH or can we keep
searching for Medline articles on Embase.com with the Emtree?
• Findings:
1. Loss of subheadings during the automatic mapping of articles from Medline on
Embase.com
2. The use of some terms differs between the MeSH and the Emtree
3. False negatives on Embase.com
- Some articles weren’t indexed with adverse effects terms whereas the articles were about
adverse effects.
4. False positives on PubMed
- Some drugs were indexed with the « adverse drug reaction » subheading whereas the article did
not mention any adverse event caused by the drug in question.
Conclusion : it would be more reliable to search for Medline on PubMed with the MeSH
28 / CONFIDENTIAL
Comparison Embase/Medline : example
• Embase
29 / CONFIDENTIAL
Comparison Embase/Medline : example
• Embase
30 / CONFIDENTIAL
Comparison Embase/Medline : example
• Embase
31 / CONFIDENTIAL
Comparison Embase/Medline : example
• PubMed
 False positive
32 / CONFIDENTIAL
Comparison Embase/Medline
• Several tests performed on Embase.com and PubMed
• Problematic: shall we search for Medline articles on PubMed with the MeSH or can we keep
searching for Medline articles on Embase.com with the Emtree?
• Findings:
1. Loss of subheadings during the automatic mapping of articles from Medline on
Embase.com
2. The use of some terms differs between the MeSH and the Emtree
3. False negatives on Embase.com
- Some articles weren’t indexed with adverse effects terms whereas the articles were about
adverse effects.
4. False positives on PubMed
- Some drugs were indexed with the « adverse drug reaction » subheading whereas the article did
not mention any adverse event caused by the drug in question.
 Conclusion: it would be more reliable to search for Medline articles on PubMed with the MeSH
33 / CONFIDENTIAL
Literature monitoring process
34 / CONFIDENTIAL
Weekly literature monitoring
• Search strategy for the weekly monitoring:
- INN (free-text + corresponding Emtree term)
- Brand names and trade names in all languages (free-text)
+ Pre-selection:
- Active ingredient corresponding
- Galenic form corresponding
- Human
35 / CONFIDENTIAL
Periodic literature monitoring
• Search strategy for the periodic monitoring:
1. Safety query: ‘product’/exp/dd_ae,dd_to
‘drug class’/exp/dd_ae,dd_to
2. Interactions query: ‘product’/dd_it
‘drug class’/dd_it
3. Benefit-risk query: product query AND benefit-risk query
drug class query AND benefit-risk query
Bold = suggestions for additions
36 / CONFIDENTIAL
Periodic literature monitoring SOP
• Search strategy for the periodic monitoring :
- Benefit-risk query (1) :
EMA guidelines
(GVP)
Concepts Terms currently used in the query Terms that could be added
Generalities General terms on the
benefit/risk
Risk benefit analysis
Drug surveillance program
Pharmacoepidemiology
Treatment effect Therapy effect
Drug effect
Treatment outcome
Benefit Efficacy Clinical effectiveness
Patient satisfaction
Risk Inefficacy Treatment failure Drug substitution
Drug withdrawal
Drug resistance
Free-text :
Ineff*
Lack of efficacy
Drug effect decreased
Nonresponse, unresponse
37 / CONFIDENTIAL
Periodic literature monitoring SOP
• Search strategy for the periodic monitoring :
- Benefit-risk query (2) :
EMA guidelines
(GVP)
Concepts Terms currently used in the query Terms that could be added
Risk Adverse effect Adverse drug reaction
Side effect OR ‘Side effect’/lnk
Risk/safety data Risk
Safety
Drug safety
Risk assessment
Patient safety
Iatrogenic disease
Intoxication, toxicity and
fatality
Drug toxicity and intoxication
(this term includes « drug fatality,
« drug intoxication » and « drug
toxicity »)
Death
Suicide
Abuse Drug abuse
Drug overdose
Medication error Medication error
Misuse Drug misuse
Hypersensitivity Drug hypersensitivity
Tolerance Drug tolerance Drug tolerability
38 / CONFIDENTIAL
Periodic literature monitoring SOP
• Search strategy for the periodic monitoring :
- Benefit-risk query (3) :
EMA guidelines
(GVP)
Concepts Terms currently used in the query Terms that could be added
Interaction Drug interaction
Clinical studies (with
a number of
subjects high
enough)
Major clinical study
Multicenter study
Off-label use Off label drug use Case report (may be very broad)
Particular
populations
Pregnant women Pregnancy
Drug exposure
Pregnancy outcome
Pregnancy disorder
Lactation
Breast feeding
(Compassionate use) (Not useful for current Galderma products) (compassionate use)
39 / CONFIDENTIAL
Periodic literature monitoring SOP
• Search strategy for the periodic monitoring :
- Benefit-risk query : 'risk benefit analysis'/de OR 'drug surveillance program’/exp OR
'pharmacoepidemiology'/exp OR 'therapy effect'/exp OR 'drug effect'/exp OR
'treatment outcome'/exp OR 'patient satisfaction'/exp OR 'clinical effectiveness'/exp
OR ‘adverse drug reaction’/exp OR ‘side effect’/exp OR ‘side effect’/lnk OR 'treatment
failure'/exp OR 'drug substitution'/exp OR ‘drug withdrawal’/exp OR ‘drug
resistance’/exp OR ineff* OR ‘lack of efficacy’ OR nonresponse OR ‘non response’ OR
‘no response’ OR unresponse OR ‘drug effect decreased’/exp OR 'risk'/exp OR
'safety'/de OR 'drug safety'/de OR 'risk assessment'/de OR ‘patient safety’/exp OR
‘iatrogenic disease’/exp OR 'drug toxicity and intoxication'/exp OR 'death'/exp OR
'suicide'/exp OR 'drug abuse'/exp OR 'drug overdose'/exp OR 'withdrawal
syndrome'/exp OR 'vitamin D intoxication'/exp OR ‘retinol intoxication’/exp OR
'toxic epidermal necrolysis'/exp OR 'toxicity'/exp OR 'medication error'/exp OR ‘drug
misuse’/exp OR 'drug hypersensitivity'/exp OR 'drug tolerance'/exp OR ‘drug
tolerability’/exp OR ‘drug interaction’/exp OR ‘major clinical study’/exp OR
‘multicenter study’/exp OR 'case report'/exp OR 'off label drug use'/exp OR
'pregnancy'/exp OR 'drug exposure'/exp OR 'pregnancy outcome'/exp OR ‘pregnancy
disorder'/exp OR 'lactation'/exp OR 'breast feeding'/exp
Bold = suggestions for additions
40 / CONFIDENTIAL
Periodic literature monitoring
• Search strategy for the periodic monitoring:
- Benefit-risk query: tests were performed to evaluate the new query
• The new query was tested in association to the adapalene query
• Old query: 825 results ; New query: 1,100 results (+25%)
• Analyze of the relevance of the articles found with the new query:
 Among the 275 articles found with the new query and that were not found with the old
query, 67% of the articles are relevant for the benefit/risk assessment
8%
17%
34%
4%
4%
29%
4%
Pediatric population
Clinical study
Off-label use
Interaction
Inefficacy
Not pertinent for the B/R
General article
41 / CONFIDENTIAL
Free-text/thesaurus
• Problematic: Would it be useful to search for the keywords in free-text, in
addition to the descriptors corresponding to the keywords on the thesaurus?
 The tests performed showed that the search with free-text was not useful
(noise). Keep in mind that we gather the literature twice: once during the
weekly monitoring and once during the periodic monitoring.
• The free-text is only useful when the concept does not exist in the thesaurus
(example: « lack of efficacy » can be used with free-text)
42 / CONFIDENTIAL
Quality key elements to document
• Useful for the weekly monitoring:
- List of products to monitor and associated queries
- Changements tracking with :
• Modification type (addition/modification/withdrawal)
• Date of request
• Date of implementation
• New query
• Execution of the weekly or periodic literature monitoring:
- Type of request (weekly monitoring/DSUR/PSUR/PBRER)
- Reference of the search
- Date of execution
- Name of the documentalist who performed the monitoring
- Period covered by the search
- Queries used
- Number of results found (including the products for which 0 result was found)*
- Number of results kept
*for the weekly search only
43 / CONFIDENTIAL
Thank you for your attention!

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Literature monitoring for pv what are we doing at galderma elsevier webinar

  • 1. 1 / CONFIDENTIAL Leslie GALLO – PharmD Student – Trainee Jean-Dominique PIERRET – PhD – Scientific Information Expert Competitive & Scientific Intelligence Literature monitoring for Pharmacovigilance
  • 2. 2 / CONFIDENTIAL Weekly and Periodic monitorings
  • 3. 3 / CONFIDENTIAL Weekly monitoring: Individual case safety report • The reporting of an adverse reaction requires 4 criteria : At least one identifiable reporter One single identifiable patient At least one suspect medicinal product At least one suspect adverse reaction Day zero is the date on which the applicant or its foreign affiliate has received the 4 basic elements. 1/ 2/ 3/ 4/
  • 4. 4 / CONFIDENTIAL Regulatory requirements for the weekly monitoring ICH EMA FDA Guideline ICH E2D Module VI of GVP 21CFR314.80 Monitoring frequency At least every 2 weeks Weekly Not specified Where to look? Widely used systematic literature reviews or reference databases Systematic literature review of two widely used reference databases that contain the largest number of articles in relation to the medicinal product properties Applicants can use literature search services (ex : Weekly Reactions) Submission criteria - The product of the applicant is clearly suspected - The product source, brand, or trade name is not specified - If multiple products are mentioned in the article, a report should be submitted only by the applicant whose product is suspected. - The product of the applicant is clearly suspected - The product source, brand, or trade name is not specified - If multiple products are mentioned in the article, a report should be submitted only by the applicant whose product is suspected. - Same active substance as a product marketed in the US (even if the excipient, dosage forms, strengths, routes of administraction, and indications vary) - If multiple products are mentioned in the article, a report should be submitted only by the applicant whose product is suspected.
  • 5. 5 / CONFIDENTIAL Regulatory requirements for the weekly monitoring ICH EMA FDA Exclusions Brand or trade name of another company can exclude - Brand or trade name of another company can exclude - The ICSR originates in a country where the company holds a marketing autorisation but has never commercialised the product - Literature ICSRs based on an analysis from a competent authority database or from publicly available databases - Literature articles which summarise results from post-autorisation studies Brand or trade name of another company can exclude Local monitoring Subsidiaries Comments « There is no acceptable loss of recall when searching published literature for pharmacovigilance. » (Module VI – GVP EMA)
  • 6. 6 / CONFIDENTIAL Periodic monitoring: DSUR • DSUR = Development Safety Update Report - Annual reporting on drugs under development - Review and evaluation of pertinent safety information collected during the reporting period - Examines if the new safety information is in line with previous knowledge • Contribution of the literature - New and significant safety finding during the reporting period - Non-clinical and clinical studies - + information on drugs of the same class if relevant
  • 7. 7 / CONFIDENTIAL Periodic monitoring: PBRER • PBRER = Periodic Benefit-Risk Evaluation Report - Annual periodic report on marketed products - Objective: enable an appraisal of the product’s benefit-risk profile by analyzing:  New safety information that could have an impact on the benefit-risk profile (and if so, conduct an integrated B-R evaluation for approved indications)  New efficacy information - Examines if the new safety information is in line with previous knowledge • Contribution of the literature - New and significant safety finding during the reporting period - Non-clinical and clinical studies - Wider than searches for ICSRs : studies reporting, safety outcomes in groups of subjects… - + information on drugs of the same class if relevant
  • 8. 8 / CONFIDENTIAL Periodic monitoring: NDA Annual Report Bibliography • New Drug Application Annual Report - Submission to the FDA within 60 days of the anniversary date of US approval of the application - Includes:  A brief summary of significant new information from the previous year that might affect the safety, effectiveness, or labeling of the drug product  Currently used labeling for patients and professionnals  Distribution data and authorized generic drugs  Chemistry, manufacturing and controls changes  Nonclinical laboratory studies  Clinical data • Contribution of the literature - Clinical information (any indications): • Safety and effectiveness, clinical trials, clinical trial on new uses • Biopharmaceutic, pharmacokinetic, clinical pharmacology studies; • Epidemiologic studies or analyses of experience in a monitored serie of patients - Nonclinical information: published reports of new toxicological findings in animal studies and in vitro studies
  • 9. 9 / CONFIDENTIAL Sources of literature for pharmacovigilance
  • 10. 10 / CONFIDENTIAL Where to look for relevant articles for pharmacovigilance? • EMA guidelines: at least 2 databases must be searched • Databases used by the Galderma’s Competitive and Scientific Intelligence service: Embase.com Which includes the references from:
  • 11. 11 / CONFIDENTIAL Medline/Embase Database Medline Embase Focus Biomedicine and health Broad biomedical scope with in-depth coverage of drugs and pharmacology Date of creation 1879 1947 Time coverage 1946 to the present 1947 to the present Produced by US National Library of Medicine Elsevier (Netherlands) Access Available free of charge via PubMed Through institutional subscription Content Journal articles, mostly from peer-reviewed journals Journal articles, mostly from peer-reviewed journals + conference abstracts since 2009 Number of records Over 23 million records from 5600 journals published in 70 countries in about 40 languages Over 21 million records from 6100 journals published in 70 countries in about 40 languages. Embase.com includes all Medline records and reaches 32 million records from 8517 journals. Updates Daily from Tuesday to Saturday (2000-4000 records per update) Daily from Tuesday to Saturday (6000 records per update) Thesaurus MeSH Emtree Uses - For clinical queries and biological, genetics topics - Similar articles are suggested (formerly « related articles ») - For easy keyword search - For drug/pharmacy topics (coverage plus subheading options) - To pick up recent articles and conference papers - For great basic, natural language search - Allows proximity operators
  • 12. 12 / CONFIDENTIAL A focus on Embase • Content - In-depth coverage of pharmacology, toxicology, pharmaceutical science and clinical research • Geographic coverage - More European journals are indexed - A special attention is given to journals published outside the main area (USA, Canada and Western Europe) - But Medline has more journals indexed from the USA than Embase • Conference abstracts - Added on Embase, nonexistent on Medline
  • 13. 13 / CONFIDENTIAL MeSH / Emtree : key figures Thesaurus MeSH Emtree Database Medline Embase Number of terms 27,883 73,000 (of which more than 30,000 are drugs and chemicals) Number of terms per article 10-20 3-4 major terms, and up to 50 minor terms _______ Medline-derived articles are not directly indexed with Emtree terms. However MeSH terms are mapped to Emtree terms to provide indexing compatible with Embase indexing. Description of terms Most terms come with a short description or definition. No definitions used for indexing because according to Elsevier, « natural language terminology means that you don’t need to know « how » terms are defined in Emtree ». However, Emtree contains definitions from Dorlands dictionary for most of terms. Synonyms 213 000 310 000 (including over 190 000 drug synonyms) Supplementary concept record 232 000 0 Updates Once per year Three times per year
  • 14. 14 / CONFIDENTIAL MeSH / Emtree : indexing process Medline/MeSH Embase/Emtree Automatic indexing Nonexistent Since 2009, 3 types of articles are indexed automatically: - Conference abstracts - Articles in Press - In-Process records Manual indexing - Federal employees or employees of firms that have contracts with NLM for biomedical indexing. - An indexer must have no less than a bachelor's degree in a biomedical science. - Performed by trained indexers with a biomedical background. - Indexers read and analyze the full text of articles in order to identify relevant concepts, and index them with the most specific Emtree terms
  • 15. 15 / CONFIDENTIAL A focus on Emtree Strength Weakness Extensive pharmaceutical coverage: - Drugs: Emtree includes chemical names, trade names, and laboratory/research codes as well as generic names for more than 31,000 drugs and chemicals, including all generic names recognised by FDA, EMA and WHO (from 2000) - Medical devices: over 3000 specific terms - Large number of drug subheadings (64), including 47 routes of drug administration For each new modified descriptor: no history of previous indexing of this concept - The history of a term before coming to the actual term is unknown.  It can be problematic to find old articles if the way of indexing before is unknown. Scopes notes seem to be less systematic than in the MeSH Limited use of subheadings - The subheadings cannot be used for every kind of descriptors. Subheadings can qualify drugs, diseases or medical devices only, contrary to the MeSH with which the descriptors can almost always be associated to subheadings
  • 17. 17 / CONFIDENTIAL Comparison Embase/Medline • Several tests performed on Embase.com and PubMed • Problematic: shall we search for Medline articles on PubMed with the MeSH or can we keep searching for Medline articles on Embase.com with the Emtree? • Findings: 1. Loss of subheadings during the automatic mapping of articles from Medline on Embase.com 2. The use of some terms differs between the MeSH and the Emtree 3. False negatives on Embase.com - Some articles weren’t indexed with adverse effects terms whereas the articles were about adverse effects. 4. False positives on PubMed - Some drugs were indexed with the « adverse drug reaction » subheading whereas the article did not mention any adverse event caused by the drug in question. Conclusion : it would be more reliable to search for Medline on PubMed with the MeSH
  • 18. 18 / CONFIDENTIAL Comparison Embase/Medline : example • PubMed
  • 19. 19 / CONFIDENTIAL Comparison Embase/Medline : example • Embase  Loss of subheadings
  • 20. 20 / CONFIDENTIAL Comparison Embase/Medline : example • Several tests performed on Embase.com and PubMed • Problematic: shall we search for Medline articles on PubMed with the MeSH or can we keep searching for Medline articles on Embase.com with the Emtree? • Findings: 1. Loss of subheadings during the automatic mapping of articles from Medline on Embase.com 2. The use of some terms differs between the MeSH and the Emtree 3. False negatives on Embase.com - Some articles weren’t indexed with adverse effects terms whereas the articles were about adverse effects. 4. False positives on PubMed - Some drugs were indexed with the « adverse drug reaction » subheading whereas the article did not mention any adverse event caused by the drug in question. Conclusion : it would be more reliable to search for Medline on PubMed with the MeSH
  • 21. 21 / CONFIDENTIAL Comparison Embase/Medline Subheading Emtree definition MeSH definition « Adverse effects » dd_ae: “Adverse drug reaction” : Used as a drug subheading to identify a drug for which an undesired side effect is reported (when used at therapeutic dose ranges in humans) AE : Used with drugs, chemicals, or biological agents in accepted dosage - or with physical agents or manufactured products in normal usage - when intended for diagnostic, therapeutic, prophylactic, or anesthetic purposes. It is used also for adverse effects or complications of diagnostic, therapeutic, prophylactic, anesthetic, surgical, or other procedures, but excludes contraindications for which "contraindications" is used. « Toxicity » dd_to: “Drug toxicity” : Used as a drug subheading to identify a drug or chemical that is toxic in animals (including LD50 tests), in animal or human cells and tissues, and in other toxicity studies. In humans, used to signal toxicity at non- therapeutic dose ranges, or when lasting damage is caused at therapeutic dose ranges. TO : Used with drugs and chemicals for experimental human and animal studies of their ill effects. It includes studies to determine the margin of safety or the reactions accompanying administration at various dose levels. It is used also for exposure to environmental agents. Poisoning should be considered for life-threatening exposure to environmental agents.
  • 22. 22 / CONFIDENTIAL Comparison Embase/Medline : example • PubMed
  • 23. 23 / CONFIDENTIAL Comparison Embase/Medline : example • Embase
  • 24. 24 / CONFIDENTIAL Comparison Embase/Medline • Several tests performed on Embase.com and PubMed • Problematic: shall we search for Medline articles on PubMed with the MeSH or can we keep searching for Medline articles on Embase.com with the Emtree? • Findings: 1. Loss of subheadings during the automatic mapping of articles from Medline on Embase.com 2. The use of some terms differs between the MeSH and the Emtree 3. False negatives on Embase.com - Some articles weren’t indexed with adverse effects terms whereas the articles were about adverse effects. 4. False positives on PubMed - Some drugs were indexed with the « adverse drug reaction » subheading whereas the article did not mention any adverse event caused by the drug in question. Conclusion : it would be more reliable to search for Medline on PubMed with the MeSH
  • 25. 25 / CONFIDENTIAL Comparison Embase/Medline : example • PubMed
  • 26. 26 / CONFIDENTIAL Comparison Embase/Medline : example • Embase.com  False negative
  • 27. 27 / CONFIDENTIAL Comparison Embase/Medline • Several tests performed on Embase.com and PubMed • Problematic: shall we search for Medline articles on PubMed with the MeSH or can we keep searching for Medline articles on Embase.com with the Emtree? • Findings: 1. Loss of subheadings during the automatic mapping of articles from Medline on Embase.com 2. The use of some terms differs between the MeSH and the Emtree 3. False negatives on Embase.com - Some articles weren’t indexed with adverse effects terms whereas the articles were about adverse effects. 4. False positives on PubMed - Some drugs were indexed with the « adverse drug reaction » subheading whereas the article did not mention any adverse event caused by the drug in question. Conclusion : it would be more reliable to search for Medline on PubMed with the MeSH
  • 28. 28 / CONFIDENTIAL Comparison Embase/Medline : example • Embase
  • 29. 29 / CONFIDENTIAL Comparison Embase/Medline : example • Embase
  • 30. 30 / CONFIDENTIAL Comparison Embase/Medline : example • Embase
  • 31. 31 / CONFIDENTIAL Comparison Embase/Medline : example • PubMed  False positive
  • 32. 32 / CONFIDENTIAL Comparison Embase/Medline • Several tests performed on Embase.com and PubMed • Problematic: shall we search for Medline articles on PubMed with the MeSH or can we keep searching for Medline articles on Embase.com with the Emtree? • Findings: 1. Loss of subheadings during the automatic mapping of articles from Medline on Embase.com 2. The use of some terms differs between the MeSH and the Emtree 3. False negatives on Embase.com - Some articles weren’t indexed with adverse effects terms whereas the articles were about adverse effects. 4. False positives on PubMed - Some drugs were indexed with the « adverse drug reaction » subheading whereas the article did not mention any adverse event caused by the drug in question.  Conclusion: it would be more reliable to search for Medline articles on PubMed with the MeSH
  • 33. 33 / CONFIDENTIAL Literature monitoring process
  • 34. 34 / CONFIDENTIAL Weekly literature monitoring • Search strategy for the weekly monitoring: - INN (free-text + corresponding Emtree term) - Brand names and trade names in all languages (free-text) + Pre-selection: - Active ingredient corresponding - Galenic form corresponding - Human
  • 35. 35 / CONFIDENTIAL Periodic literature monitoring • Search strategy for the periodic monitoring: 1. Safety query: ‘product’/exp/dd_ae,dd_to ‘drug class’/exp/dd_ae,dd_to 2. Interactions query: ‘product’/dd_it ‘drug class’/dd_it 3. Benefit-risk query: product query AND benefit-risk query drug class query AND benefit-risk query Bold = suggestions for additions
  • 36. 36 / CONFIDENTIAL Periodic literature monitoring SOP • Search strategy for the periodic monitoring : - Benefit-risk query (1) : EMA guidelines (GVP) Concepts Terms currently used in the query Terms that could be added Generalities General terms on the benefit/risk Risk benefit analysis Drug surveillance program Pharmacoepidemiology Treatment effect Therapy effect Drug effect Treatment outcome Benefit Efficacy Clinical effectiveness Patient satisfaction Risk Inefficacy Treatment failure Drug substitution Drug withdrawal Drug resistance Free-text : Ineff* Lack of efficacy Drug effect decreased Nonresponse, unresponse
  • 37. 37 / CONFIDENTIAL Periodic literature monitoring SOP • Search strategy for the periodic monitoring : - Benefit-risk query (2) : EMA guidelines (GVP) Concepts Terms currently used in the query Terms that could be added Risk Adverse effect Adverse drug reaction Side effect OR ‘Side effect’/lnk Risk/safety data Risk Safety Drug safety Risk assessment Patient safety Iatrogenic disease Intoxication, toxicity and fatality Drug toxicity and intoxication (this term includes « drug fatality, « drug intoxication » and « drug toxicity ») Death Suicide Abuse Drug abuse Drug overdose Medication error Medication error Misuse Drug misuse Hypersensitivity Drug hypersensitivity Tolerance Drug tolerance Drug tolerability
  • 38. 38 / CONFIDENTIAL Periodic literature monitoring SOP • Search strategy for the periodic monitoring : - Benefit-risk query (3) : EMA guidelines (GVP) Concepts Terms currently used in the query Terms that could be added Interaction Drug interaction Clinical studies (with a number of subjects high enough) Major clinical study Multicenter study Off-label use Off label drug use Case report (may be very broad) Particular populations Pregnant women Pregnancy Drug exposure Pregnancy outcome Pregnancy disorder Lactation Breast feeding (Compassionate use) (Not useful for current Galderma products) (compassionate use)
  • 39. 39 / CONFIDENTIAL Periodic literature monitoring SOP • Search strategy for the periodic monitoring : - Benefit-risk query : 'risk benefit analysis'/de OR 'drug surveillance program’/exp OR 'pharmacoepidemiology'/exp OR 'therapy effect'/exp OR 'drug effect'/exp OR 'treatment outcome'/exp OR 'patient satisfaction'/exp OR 'clinical effectiveness'/exp OR ‘adverse drug reaction’/exp OR ‘side effect’/exp OR ‘side effect’/lnk OR 'treatment failure'/exp OR 'drug substitution'/exp OR ‘drug withdrawal’/exp OR ‘drug resistance’/exp OR ineff* OR ‘lack of efficacy’ OR nonresponse OR ‘non response’ OR ‘no response’ OR unresponse OR ‘drug effect decreased’/exp OR 'risk'/exp OR 'safety'/de OR 'drug safety'/de OR 'risk assessment'/de OR ‘patient safety’/exp OR ‘iatrogenic disease’/exp OR 'drug toxicity and intoxication'/exp OR 'death'/exp OR 'suicide'/exp OR 'drug abuse'/exp OR 'drug overdose'/exp OR 'withdrawal syndrome'/exp OR 'vitamin D intoxication'/exp OR ‘retinol intoxication’/exp OR 'toxic epidermal necrolysis'/exp OR 'toxicity'/exp OR 'medication error'/exp OR ‘drug misuse’/exp OR 'drug hypersensitivity'/exp OR 'drug tolerance'/exp OR ‘drug tolerability’/exp OR ‘drug interaction’/exp OR ‘major clinical study’/exp OR ‘multicenter study’/exp OR 'case report'/exp OR 'off label drug use'/exp OR 'pregnancy'/exp OR 'drug exposure'/exp OR 'pregnancy outcome'/exp OR ‘pregnancy disorder'/exp OR 'lactation'/exp OR 'breast feeding'/exp Bold = suggestions for additions
  • 40. 40 / CONFIDENTIAL Periodic literature monitoring • Search strategy for the periodic monitoring: - Benefit-risk query: tests were performed to evaluate the new query • The new query was tested in association to the adapalene query • Old query: 825 results ; New query: 1,100 results (+25%) • Analyze of the relevance of the articles found with the new query:  Among the 275 articles found with the new query and that were not found with the old query, 67% of the articles are relevant for the benefit/risk assessment 8% 17% 34% 4% 4% 29% 4% Pediatric population Clinical study Off-label use Interaction Inefficacy Not pertinent for the B/R General article
  • 41. 41 / CONFIDENTIAL Free-text/thesaurus • Problematic: Would it be useful to search for the keywords in free-text, in addition to the descriptors corresponding to the keywords on the thesaurus?  The tests performed showed that the search with free-text was not useful (noise). Keep in mind that we gather the literature twice: once during the weekly monitoring and once during the periodic monitoring. • The free-text is only useful when the concept does not exist in the thesaurus (example: « lack of efficacy » can be used with free-text)
  • 42. 42 / CONFIDENTIAL Quality key elements to document • Useful for the weekly monitoring: - List of products to monitor and associated queries - Changements tracking with : • Modification type (addition/modification/withdrawal) • Date of request • Date of implementation • New query • Execution of the weekly or periodic literature monitoring: - Type of request (weekly monitoring/DSUR/PSUR/PBRER) - Reference of the search - Date of execution - Name of the documentalist who performed the monitoring - Period covered by the search - Queries used - Number of results found (including the products for which 0 result was found)* - Number of results kept *for the weekly search only
  • 43. 43 / CONFIDENTIAL Thank you for your attention!