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Overview of Cyberinfrastructure and the Breadth of Its Application  Geoffrey Fox Computer Science, Informatics, Physics Chair Informatics Department Director Community Grids Laboratory and Digital Science Center Indiana University Bloomington IN 47404 (Presenter:  Marlon Pierce ) [email_address] http://www.infomall.org [email_address]
Time Parallel Computing Grids and Federated Computing Scientific Enterprise Computing Scientific  Web 2.0 Cloud Computing Parallel Computing Evolution of Scientific Computing, 1985-2010 Evidence of Intelligent Design? Y-Axis is whatever you want it to be.
What is High Performance Computing? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
TeraGrid High Performance Computing Systems 2007-8 Computational Resources  (size approximate - not to scale) Slide Courtesy Tommy Minyard, TACC SDSC TACC NCSA ORNL PU IU PSC NCAR (504TF) 2008 (~1PF) Tennessee LONI/LSU UC/ANL
[object Object],[object Object],[object Object]
TOTEM pp, general  purpose; HI LHCb: B-physics ALICE : HI ,[object Object],[object Object],Large Hadron Collider  CERN, Geneva: 2008 Start  CMS Atlas Higgs, SUSY, Extra Dimensions, CP Violation, QG Plasma,  …  the Unexpected 5000+  Physicists 250+  Institutes 60+ Countries Challenges: Analyze petabytes of complex data cooperatively Harness global computing, data & network resources
Linked Environments for Atmospheric Discovery ,[object Object],Typical graphical interface to service composition
Environmental Monitoring Cyberinfrastructure at Clemson
Forces on Cyberinfrastructure:  Clouds, Multicore, and Web 2.0
Gartner 2008 Technology Hype Curve Clouds, Microblogs and Green IT appear Basic Web Services, Wikis and SOA  becoming mainstream
Gartner’s 2005 Hype Curve
Relevance of Web 2.0 ,[object Object],[object Object],[object Object],[object Object],[object Object]
Enterprise Approach Web 2.0 Approach JSR 168 Portlets Google Gadgets, Widgets, badges Server-side integration and processing AJAX, client-side integration and processing, JavaScript SOAP RSS, Atom, JSON WSDL REST (GET, PUT, DELETE, POST) Portlet Containers Open Social Containers (Orkut, LinkedIn, Shindig);  Facebook; StartPages User Centric Gateways Social Networking Portals Workflow managers (Taverna, Kepler, XBaya, etc) Mash-ups WS-Eventing, WS-Notification, Enterprise Messaging Blogging and Micro-blogging with REST, RSS/Atom, and JSON messages (Blogger, Twitter) Semantic Web: RDF, OWL, ontologies Microformats, folksonomies
Cloud Computing: Infrastructure and Runtimes ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Some Commercial Clouds Bold faced entries have open source equivalents  Cloud/ Service Amazon Microsoft Azure Google (and Apache) Data S3, EBS, SimpleDB Blob, Table, SQL Services GFS, BigTable Computing EC2, Elastic Map Reduce (runs Hadoop) Compute Service MapReduce (not public, but Hadoop) Service Hosting Amazon Load Balancing Web Hosting Service AppEngine/AppDrop
Clouds as Cost Effective Data Centers ,[object Object],[object Object]
Clouds Hide Complexity ,[object Object],[object Object],[object Object],[object Object],[object Object],2 Google warehouses of computers on the banks of the Columbia River, in The Dalles, Oregon Such centers use 20MW-200MW  (Future) each  150 watts per core Save money from large size, positioning with cheap power and access with Internet
Open Architecture Clouds ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Data-File Parallelism and Clouds ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Data Intensive Research ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Geospatial Examples ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Filter
Parallel Clustering and  Parallel Multidimensional Scaling MDS 4500 Points : Clustal MSA 3000 Points : Clustal MSA Kimura2 Distance Applied to ~5000 dimensional gene sequences and ~20 dimensional patient record data Very good parallel speedup 4000 Points : Patient Record Data on Obesity and Environment 4500 Points : Pairwise Aligned
Some Other File/Data Parallel Examples from Indiana University Biology Dept ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Intel’s Projection Technology might support: 2010: 16—64 cores  200GF—1 TF 2013: 64—256 cores  500GF– 4 TF 2016: 256--1024 cores  2 TF– 20 TF
Too much Computing? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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Cyberinfrastructure and Applications Overview: Howard University June22

  • 1. Overview of Cyberinfrastructure and the Breadth of Its Application Geoffrey Fox Computer Science, Informatics, Physics Chair Informatics Department Director Community Grids Laboratory and Digital Science Center Indiana University Bloomington IN 47404 (Presenter: Marlon Pierce ) [email_address] http://www.infomall.org [email_address]
  • 2. Time Parallel Computing Grids and Federated Computing Scientific Enterprise Computing Scientific Web 2.0 Cloud Computing Parallel Computing Evolution of Scientific Computing, 1985-2010 Evidence of Intelligent Design? Y-Axis is whatever you want it to be.
  • 3.
  • 4. TeraGrid High Performance Computing Systems 2007-8 Computational Resources (size approximate - not to scale) Slide Courtesy Tommy Minyard, TACC SDSC TACC NCSA ORNL PU IU PSC NCAR (504TF) 2008 (~1PF) Tennessee LONI/LSU UC/ANL
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  • 11. Forces on Cyberinfrastructure: Clouds, Multicore, and Web 2.0
  • 12. Gartner 2008 Technology Hype Curve Clouds, Microblogs and Green IT appear Basic Web Services, Wikis and SOA becoming mainstream
  • 14.
  • 15. Enterprise Approach Web 2.0 Approach JSR 168 Portlets Google Gadgets, Widgets, badges Server-side integration and processing AJAX, client-side integration and processing, JavaScript SOAP RSS, Atom, JSON WSDL REST (GET, PUT, DELETE, POST) Portlet Containers Open Social Containers (Orkut, LinkedIn, Shindig); Facebook; StartPages User Centric Gateways Social Networking Portals Workflow managers (Taverna, Kepler, XBaya, etc) Mash-ups WS-Eventing, WS-Notification, Enterprise Messaging Blogging and Micro-blogging with REST, RSS/Atom, and JSON messages (Blogger, Twitter) Semantic Web: RDF, OWL, ontologies Microformats, folksonomies
  • 16.
  • 17. Some Commercial Clouds Bold faced entries have open source equivalents Cloud/ Service Amazon Microsoft Azure Google (and Apache) Data S3, EBS, SimpleDB Blob, Table, SQL Services GFS, BigTable Computing EC2, Elastic Map Reduce (runs Hadoop) Compute Service MapReduce (not public, but Hadoop) Service Hosting Amazon Load Balancing Web Hosting Service AppEngine/AppDrop
  • 18.
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  • 24. Parallel Clustering and Parallel Multidimensional Scaling MDS 4500 Points : Clustal MSA 3000 Points : Clustal MSA Kimura2 Distance Applied to ~5000 dimensional gene sequences and ~20 dimensional patient record data Very good parallel speedup 4000 Points : Patient Record Data on Obesity and Environment 4500 Points : Pairwise Aligned
  • 25.
  • 26. Intel’s Projection Technology might support: 2010: 16—64 cores 200GF—1 TF 2013: 64—256 cores 500GF– 4 TF 2016: 256--1024 cores 2 TF– 20 TF
  • 27.