SeraCare provides reference materials and tools to address challenges in precision medicine and next generation sequencing (NGS)-based assays. Their highly multiplexed reference materials allow labs to identify assay variability and design reference materials in silico. Their biomimetic materials mimic patient samples with equivalent performance and enhanced stability. Engineered cell lines mimic rare patient-derived tumor types and variants. Their products and technologies help with development, validation, production, and reporting for a variety of NGS-based assays including tumor profiling, circulating tumor and fetal DNA, and infectious and inherited disease assays. They provide full-process reference materials in various formats including FFPE tissues, synthetic plasma, and purified DNA produced using digital PCR for high accuracy.
Immuno-Oncology (I-O) is an emerging and evolving treatment modality that includes immunotherapies designed to utilize the body’s own immune system to fight diseases. The last 30 years of I-O research has progressed considerably with approvals for the use of various I-O therapies including vaccines, cytokines, tumor-directed monoclonal antibodies, and immune checkpoint inhibitors.
https://www.creative-bioarray.com/immuno-oncology.htm
Presentation made by Andy Jarvis in the workshop on Adapting agriculture to climate change: The role of crop wild relatives, in Bellagio, Italy, 7th-9th September 2010.
Oncology is a branch of medicine that deals with the prevention, diagnosis and treatment of cancer. Research contains mechanism study (including molecule mechanism), pathological research, surgical method, medical treatment therapy (chemotherapy, radiotherapy), management for an individual patient, new drug development, etc. Obviously, oncology is often managed through discussion on multi-disciplinary.
https://www.creative-bioarray.com/oncology.htm
Information systems on fish and marine genetic resourcesapaari
Information systems on fish and marine genetic resources by ENACA Presented during the Regional Workshop on Underutilized Fish and Marine Genetic Resources and their Amelioration, 10-12 July 2019, Location: Colombo, Sri Lanka
We recently developed MVRSION for the purpose of using 16S to define microbiome bacterial populations from human, animal, or environmental sources. It is is a methodology that statistically leverages 8, rather than one, 16S hyper-variable regions.
Professor Carole Goble, University of Manchester, talks at the RIN "Research data: policies & behaviour" event as part of a series on Research Information in Transition.
CAR-T cell preclinical in vivo animal testing performed in xenograft murine models derived by well-defined cell lines or primary human tumor cells. Immunodeficient mice, lacking of effective innate immunity for the absence of B cells, T cells, or NK cells, are the optimal animal models for engraftment of tumor cells and evaluation of CAR-T cells. https://www.creative-biolabs.com/car-t/car-t-preclinical-in-vivo-assay.htm
This presentation focuses on the networking requirements using open source to treat diseases through cell-based analysis at the molecular level. Transporting this knowledge across devices and centers requires a whole new structure and networking. Terabits per second with high-availability and guaranteed delivery is required to meet the needs. Shared knowledge is the critical for real-time analysis. This will discuss data flows, open networking, and databases that are all open source and have been optimized for this problem.
Immuno-Oncology (I-O) is an emerging and evolving treatment modality that includes immunotherapies designed to utilize the body’s own immune system to fight diseases. The last 30 years of I-O research has progressed considerably with approvals for the use of various I-O therapies including vaccines, cytokines, tumor-directed monoclonal antibodies, and immune checkpoint inhibitors.
https://www.creative-bioarray.com/immuno-oncology.htm
Presentation made by Andy Jarvis in the workshop on Adapting agriculture to climate change: The role of crop wild relatives, in Bellagio, Italy, 7th-9th September 2010.
Oncology is a branch of medicine that deals with the prevention, diagnosis and treatment of cancer. Research contains mechanism study (including molecule mechanism), pathological research, surgical method, medical treatment therapy (chemotherapy, radiotherapy), management for an individual patient, new drug development, etc. Obviously, oncology is often managed through discussion on multi-disciplinary.
https://www.creative-bioarray.com/oncology.htm
Information systems on fish and marine genetic resourcesapaari
Information systems on fish and marine genetic resources by ENACA Presented during the Regional Workshop on Underutilized Fish and Marine Genetic Resources and their Amelioration, 10-12 July 2019, Location: Colombo, Sri Lanka
We recently developed MVRSION for the purpose of using 16S to define microbiome bacterial populations from human, animal, or environmental sources. It is is a methodology that statistically leverages 8, rather than one, 16S hyper-variable regions.
Professor Carole Goble, University of Manchester, talks at the RIN "Research data: policies & behaviour" event as part of a series on Research Information in Transition.
CAR-T cell preclinical in vivo animal testing performed in xenograft murine models derived by well-defined cell lines or primary human tumor cells. Immunodeficient mice, lacking of effective innate immunity for the absence of B cells, T cells, or NK cells, are the optimal animal models for engraftment of tumor cells and evaluation of CAR-T cells. https://www.creative-biolabs.com/car-t/car-t-preclinical-in-vivo-assay.htm
This presentation focuses on the networking requirements using open source to treat diseases through cell-based analysis at the molecular level. Transporting this knowledge across devices and centers requires a whole new structure and networking. Terabits per second with high-availability and guaranteed delivery is required to meet the needs. Shared knowledge is the critical for real-time analysis. This will discuss data flows, open networking, and databases that are all open source and have been optimized for this problem.
Advanced NGS Library Prep for Challenging SamplesQIAGEN
Rapidly developing next-generation sequencing (NGS) technologies provide highly sensitive methods for discovering and characterizing the genetic information of a variety of samples. However, DNA samples are often limited in quantity, as well as compromised in quality. Such samples are not suitable for standard NGS library construction methods, which commonly require hundreds of nanograms of high-quality DNA. Examples of such challenging samples include circulating DNA, laser capture microdissection (LCM) samples, formalin-fixed paraffin-embedded (FFPE) samples, ancient DNA and chromatin immunoprecipitation (ChIP) samples.
This webinar discusses the measures that should be taken into consideration while sequencing such challenging samples. It also presents methods that can be used to optimize library construction to efficiently convert small amounts of DNA samples into high-quality sequencing libraries.
VarSeq 2.6.0: Advancing Pharmacogenomics and Genomic AnalysisGolden Helix
In the rapidly evolving field of genomic analysis, staying current with the latest research, data sources, and test advancements is crucial. In this webinar, we review how VarSeq addresses the needs to stay on top of the latest with the release of VarSeq 2.6.0.
This release features an exome-optimized workflow for LOH and CNV calling as well as the introduction of VSPGx to produce pharmacogenomic reports for gene panels as well as exomes and genomes. With the recent release of gnomAD v4, we have had many requests for the integration of this large update to the most population frequency source. With VarSeq 2.6.0, the latest version of gnomAD has been integrated into VSClinical and the updated tracks spans beyond variants to cover CNVs and gene scores to update all your workflows to the latest data.
In this webcast, we will cover.
Improved VS-CNV performance and updated exome analysis workflows.
Pharmacogenomics in action: Utilizing VSPGx for exome and genome assessments.
gnomAD v4 in practice: Updated automated and manual variant interpretation workflows.
Join us for an insightful session on the latest VarSeq 2.6.0 features, bringing you the most up-to-date data and workflows for your genomic analysis.
Molecular QC: Using Reference Standards in NGS PipelinesCandy Smellie
Since its inception, next-generation sequencing has found utility in a diverse set of industries, from biomarker discovery in pharma to ancestral identification in archeology. Across the board, NGS has the advantage of allowing us to answer questions that require a lot of data. Next-generation sequencing provides orders of magnitude more data than traditional Sanger sequencing as hundreds of “lanes” analyzed in parallel vs. hundreds of millions of “clusters” which allows for many samples to be multiplexed on a single-run.
By starting with different genetic material and following specific experimental workflows, NGS can be applied to many applications.
Here we focus on DNA resequencing applications, which implies the data generated will be compared to an existing reference sequence (such as the human genome). Specifically, we’ll focus on how we can analyze patient-derived material to identify onco-relevant mutations including single-nucleotide variants, insertions-deletions, copy number variants and translocations. We’ll also focus on how known reference standards have been shown to be vital in ensuring data generated from NGS assays is accurate and reproducible.
Understanding and controlling for sample and platform biases in NGS assaysCandy Smellie
What is the impact of assay failure in your laboratory and how do you monitor for it?
The advancement of next-generation sequencing has provided invaluable resources to researchers in multiple industries and disciplines, and will be a major driver during the personalized medicine revolution that is upon us. However, while the cost of generating sequencing data continues to decrease this does not take into account the significant costs associated with the infrastructure and expertise that are required to develop a robust, routine NGS pipeline.
Specifically, as predicted by Sboner, et al in 2011, the cost of the sequencing portion of the experiment continues to decrease and the costs associated with upfront experimental design and downstream analysis dominate the cost of each assay. This is true whether you are performing a pre-clinical R&D project, and perhaps even more so for clinical assays. In the paper, the authors note the unpredictable and considerable ‘human time’ spent on the upstream design and downstream analysis. Here at Horizon, we aim to develop tools that help researchers and clinicians optimize these workflows to make NGS more reliable and ultimately, more affordable by streamlining these resource intensive areas.
Similar to GIAB Sep2016 Lightning dale yuzuki_sera_care (20)
These lecture slides, by Dr Sidra Arshad, offer a quick overview of physiological basis of a normal electrocardiogram.
Learning objectives:
1. Define an electrocardiogram (ECG) and electrocardiography
2. Describe how dipoles generated by the heart produce the waveforms of the ECG
3. Describe the components of a normal electrocardiogram of a typical bipolar leads (limb II)
4. Differentiate between intervals and segments
5. Enlist some common indications for obtaining an ECG
Study Resources:
1. Chapter 11, Guyton and Hall Textbook of Medical Physiology, 14th edition
2. Chapter 9, Human Physiology - From Cells to Systems, Lauralee Sherwood, 9th edition
3. Chapter 29, Ganong’s Review of Medical Physiology, 26th edition
4. Electrocardiogram, StatPearls - https://www.ncbi.nlm.nih.gov/books/NBK549803/
5. ECG in Medical Practice by ABM Abdullah, 4th edition
6. ECG Basics, http://www.nataliescasebook.com/tag/e-c-g-basics
micro teaching on communication m.sc nursing.pdfAnurag Sharma
Microteaching is a unique model of practice teaching. It is a viable instrument for the. desired change in the teaching behavior or the behavior potential which, in specified types of real. classroom situations, tends to facilitate the achievement of specified types of objectives.
These simplified slides by Dr. Sidra Arshad present an overview of the non-respiratory functions of the respiratory tract.
Learning objectives:
1. Enlist the non-respiratory functions of the respiratory tract
2. Briefly explain how these functions are carried out
3. Discuss the significance of dead space
4. Differentiate between minute ventilation and alveolar ventilation
5. Describe the cough and sneeze reflexes
Study Resources:
1. Chapter 39, Guyton and Hall Textbook of Medical Physiology, 14th edition
2. Chapter 34, Ganong’s Review of Medical Physiology, 26th edition
3. Chapter 17, Human Physiology by Lauralee Sherwood, 9th edition
4. Non-respiratory functions of the lungs https://academic.oup.com/bjaed/article/13/3/98/278874
Report Back from SGO 2024: What’s the Latest in Cervical Cancer?bkling
Are you curious about what’s new in cervical cancer research or unsure what the findings mean? Join Dr. Emily Ko, a gynecologic oncologist at Penn Medicine, to learn about the latest updates from the Society of Gynecologic Oncology (SGO) 2024 Annual Meeting on Women’s Cancer. Dr. Ko will discuss what the research presented at the conference means for you and answer your questions about the new developments.
Ozempic: Preoperative Management of Patients on GLP-1 Receptor Agonists Saeid Safari
Preoperative Management of Patients on GLP-1 Receptor Agonists like Ozempic and Semiglutide
ASA GUIDELINE
NYSORA Guideline
2 Case Reports of Gastric Ultrasound
Acute scrotum is a general term referring to an emergency condition affecting the contents or the wall of the scrotum.
There are a number of conditions that present acutely, predominantly with pain and/or swelling
A careful and detailed history and examination, and in some cases, investigations allow differentiation between these diagnoses. A prompt diagnosis is essential as the patient may require urgent surgical intervention
Testicular torsion refers to twisting of the spermatic cord, causing ischaemia of the testicle.
Testicular torsion results from inadequate fixation of the testis to the tunica vaginalis producing ischemia from reduced arterial inflow and venous outflow obstruction.
The prevalence of testicular torsion in adult patients hospitalized with acute scrotal pain is approximately 25 to 50 percent
Explore natural remedies for syphilis treatment in Singapore. Discover alternative therapies, herbal remedies, and lifestyle changes that may complement conventional treatments. Learn about holistic approaches to managing syphilis symptoms and supporting overall health.
Ethanol (CH3CH2OH), or beverage alcohol, is a two-carbon alcohol
that is rapidly distributed in the body and brain. Ethanol alters many
neurochemical systems and has rewarding and addictive properties. It
is the oldest recreational drug and likely contributes to more morbidity,
mortality, and public health costs than all illicit drugs combined. The
5th edition of the Diagnostic and Statistical Manual of Mental Disorders
(DSM-5) integrates alcohol abuse and alcohol dependence into a single
disorder called alcohol use disorder (AUD), with mild, moderate,
and severe subclassifications (American Psychiatric Association, 2013).
In the DSM-5, all types of substance abuse and dependence have been
combined into a single substance use disorder (SUD) on a continuum
from mild to severe. A diagnosis of AUD requires that at least two of
the 11 DSM-5 behaviors be present within a 12-month period (mild
AUD: 2–3 criteria; moderate AUD: 4–5 criteria; severe AUD: 6–11 criteria).
The four main behavioral effects of AUD are impaired control over
drinking, negative social consequences, risky use, and altered physiological
effects (tolerance, withdrawal). This chapter presents an overview
of the prevalence and harmful consequences of AUD in the U.S.,
the systemic nature of the disease, neurocircuitry and stages of AUD,
comorbidities, fetal alcohol spectrum disorders, genetic risk factors, and
pharmacotherapies for AUD.
NVBDCP.pptx Nation vector borne disease control programSapna Thakur
NVBDCP was launched in 2003-2004 . Vector-Borne Disease: Disease that results from an infection transmitted to humans and other animals by blood-feeding arthropods, such as mosquitoes, ticks, and fleas. Examples of vector-borne diseases include Dengue fever, West Nile Virus, Lyme disease, and malaria.
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Ve...kevinkariuki227
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Verified Chapters 1 - 19, Complete Newest Version.pdf
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Verified Chapters 1 - 19, Complete Newest Version.pdf
ARTIFICIAL INTELLIGENCE IN HEALTHCARE.pdfAnujkumaranit
Artificial intelligence (AI) refers to the simulation of human intelligence processes by machines, especially computer systems. It encompasses tasks such as learning, reasoning, problem-solving, perception, and language understanding. AI technologies are revolutionizing various fields, from healthcare to finance, by enabling machines to perform tasks that typically require human intelligence.
New Directions in Targeted Therapeutic Approaches for Older Adults With Mantl...i3 Health
i3 Health is pleased to make the speaker slides from this activity available for use as a non-accredited self-study or teaching resource.
This slide deck presented by Dr. Kami Maddocks, Professor-Clinical in the Division of Hematology and
Associate Division Director for Ambulatory Operations
The Ohio State University Comprehensive Cancer Center, will provide insight into new directions in targeted therapeutic approaches for older adults with mantle cell lymphoma.
STATEMENT OF NEED
Mantle cell lymphoma (MCL) is a rare, aggressive B-cell non-Hodgkin lymphoma (NHL) accounting for 5% to 7% of all lymphomas. Its prognosis ranges from indolent disease that does not require treatment for years to very aggressive disease, which is associated with poor survival (Silkenstedt et al, 2021). Typically, MCL is diagnosed at advanced stage and in older patients who cannot tolerate intensive therapy (NCCN, 2022). Although recent advances have slightly increased remission rates, recurrence and relapse remain very common, leading to a median overall survival between 3 and 6 years (LLS, 2021). Though there are several effective options, progress is still needed towards establishing an accepted frontline approach for MCL (Castellino et al, 2022). Treatment selection and management of MCL are complicated by the heterogeneity of prognosis, advanced age and comorbidities of patients, and lack of an established standard approach for treatment, making it vital that clinicians be familiar with the latest research and advances in this area. In this activity chaired by Michael Wang, MD, Professor in the Department of Lymphoma & Myeloma at MD Anderson Cancer Center, expert faculty will discuss prognostic factors informing treatment, the promising results of recent trials in new therapeutic approaches, and the implications of treatment resistance in therapeutic selection for MCL.
Target Audience
Hematology/oncology fellows, attending faculty, and other health care professionals involved in the treatment of patients with mantle cell lymphoma (MCL).
Learning Objectives
1.) Identify clinical and biological prognostic factors that can guide treatment decision making for older adults with MCL
2.) Evaluate emerging data on targeted therapeutic approaches for treatment-naive and relapsed/refractory MCL and their applicability to older adults
3.) Assess mechanisms of resistance to targeted therapies for MCL and their implications for treatment selection
Couples presenting to the infertility clinic- Do they really have infertility...Sujoy Dasgupta
Dr Sujoy Dasgupta presented the study on "Couples presenting to the infertility clinic- Do they really have infertility? – The unexplored stories of non-consummation" in the 13th Congress of the Asia Pacific Initiative on Reproduction (ASPIRE 2024) at Manila on 24 May, 2024.
Pharynx and Clinical Correlations BY Dr.Rabia Inam Gandapore.pptx
GIAB Sep2016 Lightning dale yuzuki_sera_care
1. Acute needs in Precision Medicine
• High complexity of data
– 10’s of thousands bases vs. 10’s of millions of bases
• Incompleteness of variant coverage
– homologous regions
– repetitive regions
– homopolymers
– copy number variants
• No minimal reporting standards
3. SeraCare Technology Overview
TechnologyProblem SeraCare Solution
Biosynthetics
Highly multiplexed, rare
variants, precise
frequencies
“Ground Truth”
materials allow labs to
identify assay variability,
in silico design
Biomimetics
Lack of reference
materials except
remnant patient samples
Commutable, patient-like
materials with equivalent
performance and
enhanced stability
Engineered
Cell Lines
Need to mimic patient-
derived tumor types, rare
variants, full process
RNA (12) or DNA (15)
variants, FFPE
4. Select NGS Challenges Addressed by
SeraCare Products and Technologies
Development
• Rare variants
• Positive controls
Validation
• Scarcity of human materials
• Lack of ‘ground truth’ materials
to normalize performance
Production
• Performance monitoring
• Tracking and trending data
Reporting
• CAP CLIA
• Proficiency testing
SeraCare
Products and
Technology
4
5. Seraseq™ QC Data Tools
5
Tools for
NGS-based
Assays
Tumor
profiling
assays
Circulating
tumor DNA
assays
Circulating
fetal DNA
(NIPT)
Inherited
disease
assays
Infectious
disease
assays
QC Data
Informatics
/Lab
efficiency
6. Seraseq Tools for Precision Medicine
• Multiple full-process formats
– FFPE Tissues
– synthetic plasma
– purified DNA
• Flexible technologies
– Digital PCR for high quantitation accuracy
– Ability to target any percentage of mutation to wild-
type
• VariantFlex custom capability
– Custom formats, mutations, allele frequencies
7. Seraseq Tools for Precision Medicine
FFPE Format
• FFPE Tumor Fusion RNA Reference Material v1
• FFPE Tumor Reference Material v1
Plasma-like Format
• ctDNA Reference Material v1
• Trisomy 21 Reference Material v1
• Trisomy 18 Reference Material v1
• Trisomy 13 Reference Material v1
• Trisomy 21, 18 & 13 Reference Material v1
• Trisomy 21 Aneuploidy Linearity Kit Reference Material v1
• Aneuploidy Negative (Euploid) Reference Material
Purified DNA Format
• Tumor Mutation DNA Mix v2
• Tri-Level Tumor Mutation DNA Mix v1
• ctDNA Mutation Mix Kit v1
• Cardiomyopathy Mutation DNA Mix v1
• Inherited Cancer Mutation DNA Mix v1