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ENZYMES
BIOLOGYCAL MIDDLEMAN
OR BIOCATALYST
10-1
ENZYMES
• Discovered by German biochemist adberd
bochenar.
• W. kuhane term it enzyme.
• En = in , zyme = living
• J.B. Sumner was critlizes uriase enzyme.
• Jhon Northrop and sumner proved that enzyme is
proteinious in nature.
• Altman discovered non proteineous R.N.A.
ribonuclease(ribozymes).
Lect.
10-2
Introduction
Protein catalysts are called enzymes. They are globular,
have extreme specificity for their substrates and can
speed up a reaction by a factor of millions (10
5
- 10
17
).
 There are about 2000 enz. In our body for metbolism.
Abonormal level of enzymes are responsible for a
number of Disease and Pathological Condition.
Eg. AST, ALT (LFT)
Lect.
10-3
Introduction cont……..
Enzyme not only important for metabolism but also
important for signal transduction and cell regulation.
eg. Insulin
Kinase /Phosphatases are responsible for locomotion
force.
eg. Calcium/calmoduline dependent kinase.
More exotic function including light generation
As by luciferase in fireflies
Lect.
10-4
BIOCHEMICAL NTAURE OF ENZYME
Enzymes are distinguished from other protein
by their catalytic activity.
Depends upon primary,secondary ,tertiary
and quarternary structure
Change in the structure can affect the
enzymetic activity.
10-5
ZYMOGEN OR PROENZYME
An inactive (precursor) form of an enzyme, called
zymogen or proenzymes.
For example, chymotrypsin is secreted by the
pancreas as chymotrypsinogen. It is activated in the
digestive tract by the proteolytic enzyme trypsin.
• Precursor proteins or inactive enzyme names have
the prefix “pro” like prothrombin, proelastase, etc.
or suffix “ogen” like chymotrypsinogen,
trypsinogen, pepsinogen, etc
10-6
10-7
APOENZYME + PROSTHETIC GROUP = HOLOENZYME
PROTEIN
IN NATURE
NON- PROTEIN
PART
CO- ENZYME
CO – FECTOR
OR
ACTIVATOR
INORGANIC OR
METAL IONS
METELLO ORGANIC MOL.
Or ORGANIC
COENZYME
10-8
COFACTOR
10-9
Attachment with metal ions
Metal activated enzyme - metal ion
assosiateed but not bound to enzyme
for eg. – kinase
Metallo enzyme - metal is tightly bound and
can not be removed without disrupting
Apoenzyme.
for eg. Carbonic anhydrase
10-10
Active sites of an enzyme
• Substrate Binding Site
• catalytic site
• Allosteric site
10-11
Substrate Binding
Site
catalytic Site
allosteric site
10-12
catalytic Site
allosteric site
How Enzyme Increase Rate of
reaction
10-13
NOMENCLATURE OF ENZYMES
• Previously enzyme nominated according to
their substrate
Eg. Cellulase, sucrase, amylase, uriase.
and according to both substrate and its
reaction.
Eg. Phoshpoenol pyruvate, carboxylase,
cytochrome oxydase
10-14
Enzyme Classification
Enzymes are classified according to the
type of reaction they catalyse.
All enzymes have formal ‘EC’ (Enzyme
Commission Numbering System) number
and names, and most have trivial names.
According to the International Union of
Biochemistry and Molecular Biology (IUBMB)
system, enzymes are classified into seven major
classes
Enzymes are classified according to the type of
reaction they catalyse.
Each enzyme is assigned a four-digit ‘EC’ (Enzyme
Commission) number
• The first three digits of which define the
reaction catalyzed and the fourth of which is
a unique identifier (serial number).
• Eg – EC W.X.Y.Z
• W = Enzyme class
• X = Sub class
• Y = Sub – Sub class
• Z = Serial Number (unique identifier )
10-17
• By Example
• Alcohol Dehydrogenase (EC 1.1.1.1)
1. Oxidoreductase (class 1)
1. Catalyze thanol OH group in to
acetaldehyde (subclass 1 acting on OH)
1. NAD act as electron acceptor (sub-sub
class 1)
1. Listed at no. 1 in the sub- sub class 1
10-18
The seven classes as per IUBMB are as follows:
1. EC-1: Oxidoreductases
2. EC-2: Transferases
3. EC-3: Hydrolases
4. EC-4: Lyases/Synthase
5. EC-5: Isomerases
6. EC-6: Ligases/Synthetases
7. EC-7: Translocases
EC-1 Oxidoreductases
Catalyzes oxidation-reduction reactions.
Enzymes in this category include :
 Dehydrogenases
 Reductases
 Oxidases
 Peroxidases.
EC-2 Transferases
Catalyses the transfer of a group such as, amino,
carboxyl, methyl or phosphate, etc. from one molecule to
another
Enzymes in this category include :
 Amino transferase or transaminase
 Eg. SGOT (ALT), SGPT (AST)
 Kinase: catalyzes the transfer of phosphate groups
 Eg. Hexokinase
EC-3 Hydrolases
Catalyze the cleavage of C-O, C-N, C-C and some other
bonds with the addition of water.
Enzymes in this category are:
All digestive enzymes like:
- α-amylase,
- pepsin,
- trypsin,
- chymotrypsin, etc.
Acid phosphatase
EC-4 Lyases
Catalyze the cleavage of C-O, C-C and C-N bonds by means
other than hydrolysis or oxidation, giving rise to compound
with double bonds or catalyze the reverse reaction, by the
addition of group to a double bond.
For eg. Pyruvate decarboxylse, aldolase
(aldolaseA , Aldolase B)
In cases where reverse reaction is important,
then synthase, (not synthetase of group EC-
6) is used in the name.
EC-5 Isomerases
Catalyze intramolecular structural rearrangement in a
molecule. They are called epimerases, isomerases or
mutases, depending on the type of isomerism involved.
Enzymes in this category include
Isomerases
Epimerases
Mutase
Recemases
10-29
EC-6 Ligases (Synthetases)
Catalyze the joining of two molecules coupled with the
hydrolysis of ATP.
Eg. D.N.A. Ligase, amino acyl t R.N.A. Synthetases
EC-7: Translocases (A new EC
Class)
Translocases catalyze the movement of
ions or molecules across membranes or
their separation within membranes.
Eg. ATPase
Detail
Enzymes catalyzing the translocation of:
Hydrons (H+), inorganic cations, inorganic anions, amino
acids and peptides, and carbohydrates and their derivatives.
Enzymes of the reaction that provided the driving
force for the translocation linked to:
Oxidoreductase reactions, hydrolysis of a nucleoside
triphosphate, hydrolysis of a diphosphate, and
decarboxylation reaction.
Old system classification
• 1. hydrolyzing
• 2.desmolysing
10-36
SPECIFICITY OF ENZYME ACTION
Specificity refers to the ability of an enzyme to
discriminate between two competing substrates.
Enzymes are highly specific both in the reaction
catalyzed and in their choice of substrates.
Specificity makes it possible for a number of
enzymes to co-exist in the cell without
interfering in each other’s actions.
10-37
What do you mean by specificity
• The number of substrate molecule handaled by one
active site per second is called turnover number
or kcat
• Kcat/Km(per second per mole) known as
specificity constent which is indicate how
efficiently enzyme binds with substrate.
• That’s why some time same enzyme shows
different specificity for difrent substarte.
example – hexokinase
10-38
Types of Specificity
 The following types of specificity have
been recognized:
1. Substrate specificity
2. Reaction specificity
3. Stereo specificity
10-39
1.Substrate Specificity
There are following types of substrate specificity:
i. Absolute substrate specificity
ii. Relative substrate specificity
iii. Broad substrate specificity.
1.Absolute substrate specificity
Certain enzymes will act on only one substrate and
catalyze one reaction,
e.g. Glucokinase, lactase, urease, etc.
Lect.
10-40
10-41
2.Relative substrate specificity
In this case, enzyme acts on more than one
substrate. The relative substrate specificity is
of two types:
a.Group specificity
b. Bond specificity.
10-42
a. Group specificity
• In group specificity, an enzyme acts on more than
one substrate containing a particular group,
• e.g. chymotrypsin acts on several proteins by
hydrolyzing peptide bonds attached to aromatic
amino acids. Trypsin hydrolyzes peptide linkages
involving arginine or lysine.
10-43
b. Bond specificity.
• In bond specificity, an enzyme acts on more
than one substrate containing a particular
kind of bond,
e.g. salivary α-amylase cleaves α-(1→4)
glycosidic bonds of carbohydrates, lipase
hydrolyzes ester bonds of lipids.
10-44
3.Broad substrate specificity
In this case, an enzyme acts on more than one
structurally related substrates,
e.g. hexokinase catalyzes the phosphorylation of
more than one kind of hexoses such as glucose,
fructose and mannose.
10-45
2.Reaction Specificity
In this case, an enzyme is specific to a particular
reaction but not to substrate (s) and catalyzes only
one type of reaction.
For example, pyruvate can undergo several reactions.
Each reaction is catalyzed by a separate enzyme,
which catalyzes only that reaction and none other as
shown in Figure 6.4.
10-46
10-47
3. Stereo Specificity
• Many enzymes show specificity towards
stereoisomers, i.e. they act on only one type of
isomer.
• For example,
• L-lactate dehydrogenase will act only on L- lactic
acid and not D-lactic acid.
• Likewise, L-amino acid oxidase and D-amino acid
oxidase are distinct enzymes which act only on L
and D-amino acids respectively.
10-48
• D-glucose oxidase can similarly act only on
D -glucose and not on L-glucose.
• Salivary α-amylase acts on the α-1,4
glycoside linkage and is inactive on β-1,4
glycoside linkage. • Isomerase and epimerase
do not show stereospecificity
10-49
FACTORS AFFECTING THE VELOCITY
OF ENZYME REACTION
Various factors that affect enzyme activity are:
1. Substrate concentration
2. Enzyme concentration
3. pH i.e. H+ ion concentration
4. Temperature
5. Product concentration
6. Activators and coenzymes
7. Time
8. Physical agents
9. Inhibitors
10-50
1.Effect of Substrate Concentration
Lect.
10-51
2.Effect of Enzyme Concentration
• The velocity of a reaction is directly
proportional to the amount of enzyme present as
long as the amount of substrate is not limiting.
• The substrate must be present at a concentration
sufficient to ensure that all of the enzyme
molecules have substrate bound to their active site
(Figure 6.6
10-52
10-53
3. Effect of Hydrogen Ion
Concentration (effect of pH)
• Each enzyme has an optimum pH, i.e. a pH at
which the enzyme activity is maximum. Below
or above this pH, enzyme activity is decreased.
The optimum pH
differs from enzyme to enzyme, e.g. optimum
pH for:
– Pepsin = 1.2
– Trypsin = 8.
10-54
10-55
4.Effect of Temperature
• Enzyme catalyzed reactions show an
increase in rate with increasing
temperature only within a relatively small
and low temperature range.
 • Each enzyme shows the highest
activity at a particular temperature called
optimum temperature.
10-56
10-57
5. Effect of Product
Accumulation of products of the reaction causes
the inhibition of enzyme activity for some
enzymatic reactions, this form of control will
limit the rate of formation of the product when
the product is under used. In biological systems,
however, the product is usually removed as it
becomes a substrate for a succeeding enzyme in a
metabolic pathway
10-58
6. Effect of Activators and Co-
enzymes
• The activity of many enzymes is
dependent on the activators (metallic
ions) like Mg2+, Mn2+, Zn2+, Ca2+,
Co2+, Cu2+, etc. and coenzymes for
their optimum activity. In absence of
these activators and coenzymes, enzymes
become functionally inactive
10-59
7.Effect of Time
Under optimum conditions of pH
and temperature, time required for
an enzyme reaction is less. The time
required for the completion of an
enzyme reaction increases with
changes in temperature and pH from
its optimum.
10-60
8. Effect of Physical Agents
Physical agent like light rays can inhibit or
accelerate certain enzyme reactions. For
example, the activity of salivary amylase is
increased by red and blue light. On the
other hand, it is inhibited by ultraviolet
rays. photo synthesis
10-61
9. Effect of Inhibitors
The substances which stop the enzymatic
reaction are called inhibitors. Presence of
these substances in reaction medium
decreases the rate of enzyme reaction.
Different types of enzyme inhibitors are
discussed separately later.
10-62
 ENZYME KINETICS
• The study of enzyme reaction rates and how
they change in response to changes in
experimental parameters is known as kinetics.
10-63
• One of the key factors affecting the rate of a
reaction catalyzed by an enzyme in vitro (in
laboratory) is the amount of substrate present, [S].
The effect on V0 (initial velocity) of varying
substrate [S] concentration, when enzyme
concentration is held constant, is shown in Figure
6.5.
10-64
10-65
10-66
10-67
Michaelis-Menten Equation
K1, K2 and K3 are rate constant. The Michaelis
Menten equation describes how reaction velocity
varies with substrate concentration. The relationship
between reaction rate and substrate concentration
shown in Figure 6.5 is described mathematically by
the ‘MichaelisMenten equation’ as follows:
10-70
10-71
10-72
10-73
10-74
Mathematical relation between V0,
Vmax and Km
10-75
• V0 = initial reaction velocity (is the rate of reaction
as soon as enzyme and substrates are mixed).
• Vmax = maximum velocity (is observed when all
active sites on the enzyme are filled with substrate).
• Km = Michaelis-Menten constant, [is the substrate
concentration, at which the reaction rate is half of
its maximum velocity (Vmax)].
• [S] = Substrate concentration
10-76
Significance of Km (Michaelis Constant)
1. Km provides a amount of the substrate required for
significant catalysis to occur.
2. It is a measure of the affinity of the enzyme for its
substrate, a high Km indicates weak binding and
a low Km indicates strong binding with its
substrate.
• A low Km mitochondrial form
• A high Km cytosolic form.
Significance of Vmax
 The Vmax of a reaction is an index of the catalytic
efficiency of an enzyme.
 The Vmax is useful in comparing the activity of one
enzyme with that of another.
Lineweaver-Burk Plot or Double-
Reciprocal Plot
Lineweaver-Burk plots are used to
obtain values for Vmax and Km. A more
accurate method of determining values
for Vmax and Km uses Lineweaver-
Burk equation shown below. This
equation is obtained by taking the
reciprocal of the Michaelis-Menten
equation.
10-80
• • When 1/V0 is plotted against 1/[S], a straight line is
obtained (Figure 6.9), with a slope equal to Km/Vmax.
• • The point, at which line intersects the y-axis, is
numerically equal to 1/Vmax.
• • The point at which the line intersects the x-axis is
numerically equal to –1/Km.
• • This plot is useful to determine the mechanism of action of
enzyme inhibitors
10-81
10-82
Lineweaver-Burk plot (Double reciprocal plot)
ENZYME INHIBITION
Any substance that can diminish the velocity
of an enzyme catalyzed reaction is called
inhibitor. Two general classes of inhibitors
are recognized according to whether the
inhibitor action is reversible or irreversible
(Figure 6.10) 1. Reversible inhibitor 2.
Irreversible inhibitor.
10-84
10-85
A.Reversible Inhibitor
• Reversible inhibitors bind to enzymes through
noncovalent bonds and the activity of the enzyme is
restored fully when the inhibitor is removed.
• Different types of reversible inhibitors are:
i. Competitive or substrate analogue inhibitor
ii. Noncompetitive inhibitor
iii. Uncompetitive inhibitor
10-86
i. Competitive or substrate analogue
inhibitor
• A competitive inhibitor is usually a structural
analogue of the substrate.
• The chemical structure of the inhibitor (I) closely
resembles that of the substrate (S) and binds to the
enzyme at the active site, forming an EI complex
rather than ES-complex (Figure 6.11).
10-87
10-88
Example of competitive inhibision
• The classical example is the competitive inhibition of
succinate dehydrogenase by the malonate.
• Succinate dehydrogenase is one of the enzymes of the
citric acid cycle. Succinate dehydrogenase is inhibited
by malonate which resembles succinate.
• The inhibition could be overcome by increasing
substrate concentration. In competitive inhibition, the
Km increases whereas Vmax remains unchanged
10-89
10-90
ii. Noncompetitive inhibitor
• As the name implies,
• It binds at a site on the enzyme molecule other than
the substrate-binding site and thus there is no
competition between inhibitor and substrate.
• Since inhibitor and substrate may bind at different
sites; formation of both EI and EIS-complexes is
possible.
• Since EIS may breakdown to form product at a
slower rate than does ES, the reaction is slowed but
not halted. The following reactions may occur:
10-91
• For noncompetitive inhibition, the Km value is
unchanged while Vmax is lowered
10-92
• Examples of noncompetitive inhibitors are: –
• Ethanol or certain narcotic drugs are noncompetitive
inhibitor of acid phosphatase.
• – Trypsin inhibitors occur in soybean and raw egg
white, inhibit activity of trypsin noncompetitively.
• – As well as Ascaris parasites (worm) contain pepsin
and trypsin inhibitors, which inhibit noncompetitively
action of pepsin and trypsin, that is why ascaris worm is
not digested in human intestine.
10-93
10-94
iii. Uncompetitive inhibitor
• Uncompetitive inhibitor can bind only to the
enzyme-substrate (ES) complex.
• It does not have affinity for free enzyme.
Uncompetitive inhibitor decreases both Vmax and
Km (Figure 6.14).
• This form of inhibitor is rare with single substrate
but more common in multiple substrate reaction.
10-95
• A clinically important example is the action of
lithium in alleviating manic depression; Li ions
are uncompetitive inhibitors of myo-inositol
monophosphatase.
• According to chemistry law the reaction shift to
right side and the affinity is increased to form
enzyme and substrate complex.
10-96
10-97
10-98
B. Irreversible Inhibitors
• An irreversible inhibitor binds with an
enzyme tightly covalently and forms a
stable complex.
•• An irreversible inhibitor cannot be
released by dilution or dialysis or
simply by increasing the concentration
of substrate.
10-99
• Irreversible inhibitors can be divided into
three categories:
• i. Group specific inhibitors
• ii. Substrate analogue inhibitor or affinity
labels
• iii. Suicide inhibitor or mechanism based
inactivation.
100
•In terms of enzyme kinetics, the effect of
an irreversible inhibitor is like that of the
reversible noncompetitive inhibitors
resulting in a decreased in Vmax but
having no effect on the Km (Table 6.5)
101
i. Group Specific Irreversible Inhibitor
• These inhibitors react with specific R-groups (side
chain) of amino acid residues in the active site of
enzyme. Examples of group specific irreversible
inhibitors are:
eg . Di-isopropylphosphofluoride (DIPF)
102
• DIPF (Di-isopropylphosphofluoride)can
inhibit an enzyme acetylcholine esterase
by covalently reacting with hydroxyl
group of a serine residue present at the
active site of the enzyme (Figure 6.15)
103
104
DIPF has also been found to inhibit trypsin, chymotrypsin, elastase and
phosphoglucomutase
• eg. Iodoacetamide and heavy metals
• Iodoacetamide and heavy metals like,
Pb2+, Ag+, Hg2+, etc. which react with sulfhydryl
(-SH) group of cysteine residues present at the
active site of the enzyme and makes them inactive.
Thiol Group of cystiene
Hydroxyl Group of Serine
Imidazol Group of Histidine
105
ii. Substrate analogue inhibitor or
affinity labels
• Substrate analogues or affinity labels are molecules
that are structurally similar to the substrate.
• These substrate analogues possess a highly reactive
group which is not present in the natural substrate.
106
• The reactive group of substrate analogues covalently
reacts with amino acid residues of the active site of
the enzyme and permanently block the active site of
the enzyme,
e.g. 3-Bromoacetol phosphate (BAP).
• BAP is a substrate analogue of the normal substrate
dihydroxyacetone phosphate (DHAP) for the
enzyme phosphotriose isomerase of glycolysis.
107
iii. Suicide inhibitor or mechanism based
inactivation.
• These compounds are relatively unreactive until
they bind to the active site of a specific enzyme.
• On binding to the active site of the enzyme they
carry out the first few catalytic activities of the
normal enzyme reaction.
108
• Instead of being transformed into a normal
product, however, the inhibitor is converted to
a very reactive compound that combines
irreversibly with the enzyme leading to its
irreversible inhibition.
109
• The enzyme literally commits suicide. These are
also called mechanism based inactivation because
they utilize the normal enzyme reaction
mechanism to inactivate the enzyme.
• These inhibitors act as drugs for example.
Penicillin
Aspirin
Disulfiram
110
• Penicillin
• Penicillin irreversibly inactivates an essential bacterial
enzyme glycopeptidyl transpeptidase involved in the
formation of bacterial cell wall.
• Aspirin
• Aspirin inactivates an enzyme cyclo-oxygenase which
catalyzes the first reaction in the biosynthesis of
prostaglandins from arachidonic acid.
• Disulfiram(antabuse)
• Disulfiram is a drug used in the treatment of alcoholism. It
inhibits irreversibly aldehyde dehydrogenase enzyme resulting
in accumulation of acetaldehyde in the body.
111
112
Clinical Application of Enzyme Inhibitor
• Enzyme inhibitors have therapeutic applications.
Most antibiotics and anticancer drugs that are used
therapeutically are either competitive inhibitor or
mechanism based suicide inhibitor. Some
commonly used drugs that exert their effects by
inhibiting enzymes are described in Table 6.4.
113
114
ALLOSTERIC ENZYME
•Allosteric enzyme is a regulatory
enzyme. The term allosteric derives from
Greek word, allo means other and steros
means space or site. Allosteric enzymes
are those having other site.
115
• Like all enzymes, allosteric enzymes have
active site for binding of the substrate but
they also have one or more regulatory or
(allosteric) sites for binding regulatory
metabolites which is called modulator.
116
• Modulators that inhibit enzyme activity
are termed negative modulators. Whereas
those that increase enzyme activity are
called positive modulators.
117
Feedback Allosteric Inhibition
• In some multienzyme systems, the first
enzyme of the sequence is the regulatory
enzyme and has distinctive characteristics.
• It is inhibited by the end product of the
multienzyme system
118
119
120
ISOENZYME
• Isoenzymes or isozymes are multiple forms
(isomers) of the same enzyme that catalyze the same
biochemical reaction. Isoenzymes show different
chemical and physical properties like electrophoretic
mobility and kinetic properties.
• Not all enzymes have isoenzymes
121
• For example:
1. Lactate dehydrogenase (LDH)
2. Creatine kinase (CK) (formerly
called creatine phosphokinase (CPK).
• Some more examples of isoenzymes
are given in Table 6.7
122
123
• Lactate Dehydrogenase (LDH)
Lactate dehydrogenase is a tetrameric enzyme that
catalyzes the oxidation of L-lactate to pyruvate.
• LDH has five isoenzymes:
– LDH1
– LDH2
– LDH3
– LDH4
– LDH5.
• Since LDH is a tetramer, made up of two types of
polypeptide M (muscle) type and H (heart) type, five
combinations are possible with varying ratios of two kinds
of polypeptides (Table 6.8).
124
• • Five isoenzymes of LDH can be detected by
electrophoresis as they have different electrophoretic
mobilities.
• • LDH1 is the fastest moving fraction towards the
anode and LDH5 is the slowest moving isoenzyme of
LDH (Figure 6.17).
125
Clinical Applications of LDH
• The LDH isoenzyme analysis may be useful in the
following clinical situations (Table 6.8):
• • Significant elevation of LDH1 and LDH2
(LDH1>LDH2) occurs within 24 to 48 hours after
myocardial infarction.
• • Predominant elevation of LDH2 and LDH3 occur
in leukemia. LDH3 is the main isoenzyme elevated
due to malignancy of many tissues.
• • Elevation of LDH5 occurs after damage to the liver
or skeletal muscle.
126
• Creatine Kinase (CK)
• • Creatine kinase isoenzymes are dimer that are
made up of two types of polypeptide chains,
which may be either M (muscle) type or B
(brain) type, generating three isoenzymes (Table
6.8).
• – CK1 (BB) : It is present in the brain
• – CK2 (MB) : Cardiac tissue is the only tissue
which has the mixed MB (CK2) isoenzyme
• – CK3 (MM) : It is present in skeletal muscle.
127
• Clinical Application
• • CK1 may be elevated in neonates
particularly in damaged brain or very low
birth weight newborn.
• • Increased level of CK2 in blood is
characteristic of damage of heart tissue from
myocardial infarction because cardiac tissue
is the only tissue which has the mixed MB
(CK2) isoenzyme.
• • Elevated levels of CK3 in serum occur in all
types of dystrophies and myopathies
128
129
• CLINICAL SIGNIFICANCE OF ENZYMES
• Certain enzymes are used:
• For the diagnosis of the disease
• As therapeutic agents
• As analytical reagents.
• Diagnostic Use of Enzymes
enzymes are known as marker of cellular damage and their
measurement in plasma is used in the investigation of
diseases of liver, heart, skeletal muscle, the biliary tract and
the pancreas.
130
The enzymes that are found in plasma can be
categorized into two major groups
: The plasma specific enzyme and the plasma
nonspecific enzyme.
• The plasma specific enzymes are present in higher
concentration in plasma than in most tissues;
e.g. – The enzymes involved in blood coagulation –
Ferroxidase – Pseudocholinesterase – Lipoprotein
lipase.
• These enzymes are clinically of interest when their
concentration decreases in plasma.
131
• The plasma nonspecific enzymes are present in
very high concentration in tissues than in the
plasma. Estimation of plasma nonspecific
enzymes is very important for the diagnosis of
several disease.
• • The important enzymes useful for the diagnosis
of specific diseases are listed in Table 6.9..
132
133
134
• Enzyme Assay in Myocardial Infarction
The enzymes’ assay, which are most
helpful in the diagnosis of myocardial
infarction are listed in Table 6.10 and
Figure 6.18.
135
136
137
• Therapeutic Use of Enzymes Some enzymes are
used in the treatment of some diseases of human
being. For example:
• • Bacterial asparginase is used in the treatment of
some types of leukemia. Asparginase which
hydrolyzes aspargine to aspartic acid. Aspargine
is necessary for the formation of leukemic white
cell.
• • Chymotrypsin: Used for dissolving ligaments of
the lens during the extraction of cataract.
• • Collagenase: Used for debridement (cleaning of
wound by removing dead tissue) of dermal ulcers
and severe burns.
138
• • Fibrinolysin: It is used in the venous
thrombosis, pulmonary and arterial embolism
(blood clot).
• • Hyaluronidase: It is used to promote the rapid
absorption of drugs injected subcutaneously. It
acts by increasing tissue permeability. It is used
in the treatment of traumatic or postoperative
edema.
• • Lysozyme (an antibiotic) found in human
tears and egg white, is used in the infection of
eye. It has antibacterial action, it acts on
cellulose of bacteria.
139
• • Penicillinase (bacterial enzyme) is used
for the treatment of persons who are
allergic to penicillin, penicillinase destroys
penicillin.
• • Rennin is used for the treatment of gastric
achylia.
• • Streptokinase: Streptokinase and
urokinase are used in myocardial infarction
to dissolve blood clot or purulent
(containing pus) material. It causes
fibrinolysis.
140
• • Trypsin: It is a proteolytic enzyme and
is used to clean the wounds by dissolving
purulent material and in the treatment of
acute thrombophlebitis to dissolve the
blood clot.
• • Pepsin, trypsin peptidase, lipase,
amylase elastase and cellulase are used in
gastrointestinal tract (GIT) disorders and
chronic pancreatitis.
141
• Analytical Use of Enzymes
• • Enzymes can be used as reagents and labels.
• • In addition to measurement of serum enzyme activity
for the diagnosis and management of disease, enzymes
are widely used in the clinical laboratory as reagents
for the estimation of serum constituents. Some
examples are given in Table 6.11.
• • Many enzymes have been used as the label in various
immunoassays (enzyme linked immunosorption assay,
ELISA) for determining the serum concentration of
drugs, hormones or other compounds of interest.
Commonly used label enzymes are: – Glucose-6-
phosphate dehydrogenase – Alkaline phosphatase – β-
galactosidase – Peroxidase.
142
143
How enzyme are regulate In detail
144
145
146
147
148

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Enzymes

  • 2. ENZYMES • Discovered by German biochemist adberd bochenar. • W. kuhane term it enzyme. • En = in , zyme = living • J.B. Sumner was critlizes uriase enzyme. • Jhon Northrop and sumner proved that enzyme is proteinious in nature. • Altman discovered non proteineous R.N.A. ribonuclease(ribozymes). Lect. 10-2
  • 3. Introduction Protein catalysts are called enzymes. They are globular, have extreme specificity for their substrates and can speed up a reaction by a factor of millions (10 5 - 10 17 ).  There are about 2000 enz. In our body for metbolism. Abonormal level of enzymes are responsible for a number of Disease and Pathological Condition. Eg. AST, ALT (LFT) Lect. 10-3
  • 4. Introduction cont…….. Enzyme not only important for metabolism but also important for signal transduction and cell regulation. eg. Insulin Kinase /Phosphatases are responsible for locomotion force. eg. Calcium/calmoduline dependent kinase. More exotic function including light generation As by luciferase in fireflies Lect. 10-4
  • 5. BIOCHEMICAL NTAURE OF ENZYME Enzymes are distinguished from other protein by their catalytic activity. Depends upon primary,secondary ,tertiary and quarternary structure Change in the structure can affect the enzymetic activity. 10-5
  • 6. ZYMOGEN OR PROENZYME An inactive (precursor) form of an enzyme, called zymogen or proenzymes. For example, chymotrypsin is secreted by the pancreas as chymotrypsinogen. It is activated in the digestive tract by the proteolytic enzyme trypsin. • Precursor proteins or inactive enzyme names have the prefix “pro” like prothrombin, proelastase, etc. or suffix “ogen” like chymotrypsinogen, trypsinogen, pepsinogen, etc 10-6
  • 7. 10-7 APOENZYME + PROSTHETIC GROUP = HOLOENZYME PROTEIN IN NATURE NON- PROTEIN PART CO- ENZYME CO – FECTOR OR ACTIVATOR INORGANIC OR METAL IONS METELLO ORGANIC MOL. Or ORGANIC
  • 10. Attachment with metal ions Metal activated enzyme - metal ion assosiateed but not bound to enzyme for eg. – kinase Metallo enzyme - metal is tightly bound and can not be removed without disrupting Apoenzyme. for eg. Carbonic anhydrase 10-10
  • 11. Active sites of an enzyme • Substrate Binding Site • catalytic site • Allosteric site 10-11 Substrate Binding Site catalytic Site allosteric site
  • 13. How Enzyme Increase Rate of reaction 10-13
  • 14. NOMENCLATURE OF ENZYMES • Previously enzyme nominated according to their substrate Eg. Cellulase, sucrase, amylase, uriase. and according to both substrate and its reaction. Eg. Phoshpoenol pyruvate, carboxylase, cytochrome oxydase 10-14
  • 15. Enzyme Classification Enzymes are classified according to the type of reaction they catalyse. All enzymes have formal ‘EC’ (Enzyme Commission Numbering System) number and names, and most have trivial names.
  • 16. According to the International Union of Biochemistry and Molecular Biology (IUBMB) system, enzymes are classified into seven major classes Enzymes are classified according to the type of reaction they catalyse. Each enzyme is assigned a four-digit ‘EC’ (Enzyme Commission) number
  • 17. • The first three digits of which define the reaction catalyzed and the fourth of which is a unique identifier (serial number). • Eg – EC W.X.Y.Z • W = Enzyme class • X = Sub class • Y = Sub – Sub class • Z = Serial Number (unique identifier ) 10-17
  • 18. • By Example • Alcohol Dehydrogenase (EC 1.1.1.1) 1. Oxidoreductase (class 1) 1. Catalyze thanol OH group in to acetaldehyde (subclass 1 acting on OH) 1. NAD act as electron acceptor (sub-sub class 1) 1. Listed at no. 1 in the sub- sub class 1 10-18
  • 19. The seven classes as per IUBMB are as follows: 1. EC-1: Oxidoreductases 2. EC-2: Transferases 3. EC-3: Hydrolases 4. EC-4: Lyases/Synthase 5. EC-5: Isomerases 6. EC-6: Ligases/Synthetases 7. EC-7: Translocases
  • 21. Enzymes in this category include :  Dehydrogenases  Reductases  Oxidases  Peroxidases.
  • 22. EC-2 Transferases Catalyses the transfer of a group such as, amino, carboxyl, methyl or phosphate, etc. from one molecule to another
  • 23. Enzymes in this category include :  Amino transferase or transaminase  Eg. SGOT (ALT), SGPT (AST)  Kinase: catalyzes the transfer of phosphate groups  Eg. Hexokinase
  • 24. EC-3 Hydrolases Catalyze the cleavage of C-O, C-N, C-C and some other bonds with the addition of water.
  • 25. Enzymes in this category are: All digestive enzymes like: - α-amylase, - pepsin, - trypsin, - chymotrypsin, etc. Acid phosphatase
  • 26. EC-4 Lyases Catalyze the cleavage of C-O, C-C and C-N bonds by means other than hydrolysis or oxidation, giving rise to compound with double bonds or catalyze the reverse reaction, by the addition of group to a double bond.
  • 27. For eg. Pyruvate decarboxylse, aldolase (aldolaseA , Aldolase B) In cases where reverse reaction is important, then synthase, (not synthetase of group EC- 6) is used in the name.
  • 28. EC-5 Isomerases Catalyze intramolecular structural rearrangement in a molecule. They are called epimerases, isomerases or mutases, depending on the type of isomerism involved.
  • 29. Enzymes in this category include Isomerases Epimerases Mutase Recemases 10-29
  • 30. EC-6 Ligases (Synthetases) Catalyze the joining of two molecules coupled with the hydrolysis of ATP. Eg. D.N.A. Ligase, amino acyl t R.N.A. Synthetases
  • 31. EC-7: Translocases (A new EC Class) Translocases catalyze the movement of ions or molecules across membranes or their separation within membranes. Eg. ATPase
  • 32. Detail Enzymes catalyzing the translocation of: Hydrons (H+), inorganic cations, inorganic anions, amino acids and peptides, and carbohydrates and their derivatives. Enzymes of the reaction that provided the driving force for the translocation linked to: Oxidoreductase reactions, hydrolysis of a nucleoside triphosphate, hydrolysis of a diphosphate, and decarboxylation reaction.
  • 33.
  • 34.
  • 35.
  • 36. Old system classification • 1. hydrolyzing • 2.desmolysing 10-36
  • 37. SPECIFICITY OF ENZYME ACTION Specificity refers to the ability of an enzyme to discriminate between two competing substrates. Enzymes are highly specific both in the reaction catalyzed and in their choice of substrates. Specificity makes it possible for a number of enzymes to co-exist in the cell without interfering in each other’s actions. 10-37
  • 38. What do you mean by specificity • The number of substrate molecule handaled by one active site per second is called turnover number or kcat • Kcat/Km(per second per mole) known as specificity constent which is indicate how efficiently enzyme binds with substrate. • That’s why some time same enzyme shows different specificity for difrent substarte. example – hexokinase 10-38
  • 39. Types of Specificity  The following types of specificity have been recognized: 1. Substrate specificity 2. Reaction specificity 3. Stereo specificity 10-39
  • 40. 1.Substrate Specificity There are following types of substrate specificity: i. Absolute substrate specificity ii. Relative substrate specificity iii. Broad substrate specificity. 1.Absolute substrate specificity Certain enzymes will act on only one substrate and catalyze one reaction, e.g. Glucokinase, lactase, urease, etc. Lect. 10-40
  • 41. 10-41
  • 42. 2.Relative substrate specificity In this case, enzyme acts on more than one substrate. The relative substrate specificity is of two types: a.Group specificity b. Bond specificity. 10-42
  • 43. a. Group specificity • In group specificity, an enzyme acts on more than one substrate containing a particular group, • e.g. chymotrypsin acts on several proteins by hydrolyzing peptide bonds attached to aromatic amino acids. Trypsin hydrolyzes peptide linkages involving arginine or lysine. 10-43
  • 44. b. Bond specificity. • In bond specificity, an enzyme acts on more than one substrate containing a particular kind of bond, e.g. salivary α-amylase cleaves α-(1→4) glycosidic bonds of carbohydrates, lipase hydrolyzes ester bonds of lipids. 10-44
  • 45. 3.Broad substrate specificity In this case, an enzyme acts on more than one structurally related substrates, e.g. hexokinase catalyzes the phosphorylation of more than one kind of hexoses such as glucose, fructose and mannose. 10-45
  • 46. 2.Reaction Specificity In this case, an enzyme is specific to a particular reaction but not to substrate (s) and catalyzes only one type of reaction. For example, pyruvate can undergo several reactions. Each reaction is catalyzed by a separate enzyme, which catalyzes only that reaction and none other as shown in Figure 6.4. 10-46
  • 47. 10-47
  • 48. 3. Stereo Specificity • Many enzymes show specificity towards stereoisomers, i.e. they act on only one type of isomer. • For example, • L-lactate dehydrogenase will act only on L- lactic acid and not D-lactic acid. • Likewise, L-amino acid oxidase and D-amino acid oxidase are distinct enzymes which act only on L and D-amino acids respectively. 10-48
  • 49. • D-glucose oxidase can similarly act only on D -glucose and not on L-glucose. • Salivary α-amylase acts on the α-1,4 glycoside linkage and is inactive on β-1,4 glycoside linkage. • Isomerase and epimerase do not show stereospecificity 10-49
  • 50. FACTORS AFFECTING THE VELOCITY OF ENZYME REACTION Various factors that affect enzyme activity are: 1. Substrate concentration 2. Enzyme concentration 3. pH i.e. H+ ion concentration 4. Temperature 5. Product concentration 6. Activators and coenzymes 7. Time 8. Physical agents 9. Inhibitors 10-50
  • 51. 1.Effect of Substrate Concentration Lect. 10-51
  • 52. 2.Effect of Enzyme Concentration • The velocity of a reaction is directly proportional to the amount of enzyme present as long as the amount of substrate is not limiting. • The substrate must be present at a concentration sufficient to ensure that all of the enzyme molecules have substrate bound to their active site (Figure 6.6 10-52
  • 53. 10-53
  • 54. 3. Effect of Hydrogen Ion Concentration (effect of pH) • Each enzyme has an optimum pH, i.e. a pH at which the enzyme activity is maximum. Below or above this pH, enzyme activity is decreased. The optimum pH differs from enzyme to enzyme, e.g. optimum pH for: – Pepsin = 1.2 – Trypsin = 8. 10-54
  • 55. 10-55
  • 56. 4.Effect of Temperature • Enzyme catalyzed reactions show an increase in rate with increasing temperature only within a relatively small and low temperature range.  • Each enzyme shows the highest activity at a particular temperature called optimum temperature. 10-56
  • 57. 10-57
  • 58. 5. Effect of Product Accumulation of products of the reaction causes the inhibition of enzyme activity for some enzymatic reactions, this form of control will limit the rate of formation of the product when the product is under used. In biological systems, however, the product is usually removed as it becomes a substrate for a succeeding enzyme in a metabolic pathway 10-58
  • 59. 6. Effect of Activators and Co- enzymes • The activity of many enzymes is dependent on the activators (metallic ions) like Mg2+, Mn2+, Zn2+, Ca2+, Co2+, Cu2+, etc. and coenzymes for their optimum activity. In absence of these activators and coenzymes, enzymes become functionally inactive 10-59
  • 60. 7.Effect of Time Under optimum conditions of pH and temperature, time required for an enzyme reaction is less. The time required for the completion of an enzyme reaction increases with changes in temperature and pH from its optimum. 10-60
  • 61. 8. Effect of Physical Agents Physical agent like light rays can inhibit or accelerate certain enzyme reactions. For example, the activity of salivary amylase is increased by red and blue light. On the other hand, it is inhibited by ultraviolet rays. photo synthesis 10-61
  • 62. 9. Effect of Inhibitors The substances which stop the enzymatic reaction are called inhibitors. Presence of these substances in reaction medium decreases the rate of enzyme reaction. Different types of enzyme inhibitors are discussed separately later. 10-62
  • 63.  ENZYME KINETICS • The study of enzyme reaction rates and how they change in response to changes in experimental parameters is known as kinetics. 10-63
  • 64. • One of the key factors affecting the rate of a reaction catalyzed by an enzyme in vitro (in laboratory) is the amount of substrate present, [S]. The effect on V0 (initial velocity) of varying substrate [S] concentration, when enzyme concentration is held constant, is shown in Figure 6.5. 10-64
  • 65. 10-65
  • 66. 10-66
  • 67. 10-67
  • 68. Michaelis-Menten Equation K1, K2 and K3 are rate constant. The Michaelis Menten equation describes how reaction velocity varies with substrate concentration. The relationship between reaction rate and substrate concentration shown in Figure 6.5 is described mathematically by the ‘MichaelisMenten equation’ as follows: 10-70
  • 69. 10-71
  • 70. 10-72
  • 71. 10-73
  • 72. 10-74
  • 73. Mathematical relation between V0, Vmax and Km 10-75
  • 74. • V0 = initial reaction velocity (is the rate of reaction as soon as enzyme and substrates are mixed). • Vmax = maximum velocity (is observed when all active sites on the enzyme are filled with substrate). • Km = Michaelis-Menten constant, [is the substrate concentration, at which the reaction rate is half of its maximum velocity (Vmax)]. • [S] = Substrate concentration 10-76
  • 75. Significance of Km (Michaelis Constant) 1. Km provides a amount of the substrate required for significant catalysis to occur. 2. It is a measure of the affinity of the enzyme for its substrate, a high Km indicates weak binding and a low Km indicates strong binding with its substrate.
  • 76. • A low Km mitochondrial form • A high Km cytosolic form.
  • 77. Significance of Vmax  The Vmax of a reaction is an index of the catalytic efficiency of an enzyme.  The Vmax is useful in comparing the activity of one enzyme with that of another.
  • 78. Lineweaver-Burk Plot or Double- Reciprocal Plot Lineweaver-Burk plots are used to obtain values for Vmax and Km. A more accurate method of determining values for Vmax and Km uses Lineweaver- Burk equation shown below. This equation is obtained by taking the reciprocal of the Michaelis-Menten equation. 10-80
  • 79. • • When 1/V0 is plotted against 1/[S], a straight line is obtained (Figure 6.9), with a slope equal to Km/Vmax. • • The point, at which line intersects the y-axis, is numerically equal to 1/Vmax. • • The point at which the line intersects the x-axis is numerically equal to –1/Km. • • This plot is useful to determine the mechanism of action of enzyme inhibitors 10-81
  • 80. 10-82
  • 81. Lineweaver-Burk plot (Double reciprocal plot)
  • 82. ENZYME INHIBITION Any substance that can diminish the velocity of an enzyme catalyzed reaction is called inhibitor. Two general classes of inhibitors are recognized according to whether the inhibitor action is reversible or irreversible (Figure 6.10) 1. Reversible inhibitor 2. Irreversible inhibitor. 10-84
  • 83. 10-85
  • 84. A.Reversible Inhibitor • Reversible inhibitors bind to enzymes through noncovalent bonds and the activity of the enzyme is restored fully when the inhibitor is removed. • Different types of reversible inhibitors are: i. Competitive or substrate analogue inhibitor ii. Noncompetitive inhibitor iii. Uncompetitive inhibitor 10-86
  • 85. i. Competitive or substrate analogue inhibitor • A competitive inhibitor is usually a structural analogue of the substrate. • The chemical structure of the inhibitor (I) closely resembles that of the substrate (S) and binds to the enzyme at the active site, forming an EI complex rather than ES-complex (Figure 6.11). 10-87
  • 86. 10-88
  • 87. Example of competitive inhibision • The classical example is the competitive inhibition of succinate dehydrogenase by the malonate. • Succinate dehydrogenase is one of the enzymes of the citric acid cycle. Succinate dehydrogenase is inhibited by malonate which resembles succinate. • The inhibition could be overcome by increasing substrate concentration. In competitive inhibition, the Km increases whereas Vmax remains unchanged 10-89
  • 88. 10-90
  • 89. ii. Noncompetitive inhibitor • As the name implies, • It binds at a site on the enzyme molecule other than the substrate-binding site and thus there is no competition between inhibitor and substrate. • Since inhibitor and substrate may bind at different sites; formation of both EI and EIS-complexes is possible. • Since EIS may breakdown to form product at a slower rate than does ES, the reaction is slowed but not halted. The following reactions may occur: 10-91
  • 90. • For noncompetitive inhibition, the Km value is unchanged while Vmax is lowered 10-92
  • 91. • Examples of noncompetitive inhibitors are: – • Ethanol or certain narcotic drugs are noncompetitive inhibitor of acid phosphatase. • – Trypsin inhibitors occur in soybean and raw egg white, inhibit activity of trypsin noncompetitively. • – As well as Ascaris parasites (worm) contain pepsin and trypsin inhibitors, which inhibit noncompetitively action of pepsin and trypsin, that is why ascaris worm is not digested in human intestine. 10-93
  • 92. 10-94
  • 93. iii. Uncompetitive inhibitor • Uncompetitive inhibitor can bind only to the enzyme-substrate (ES) complex. • It does not have affinity for free enzyme. Uncompetitive inhibitor decreases both Vmax and Km (Figure 6.14). • This form of inhibitor is rare with single substrate but more common in multiple substrate reaction. 10-95
  • 94. • A clinically important example is the action of lithium in alleviating manic depression; Li ions are uncompetitive inhibitors of myo-inositol monophosphatase. • According to chemistry law the reaction shift to right side and the affinity is increased to form enzyme and substrate complex. 10-96
  • 95. 10-97
  • 96. 10-98
  • 97. B. Irreversible Inhibitors • An irreversible inhibitor binds with an enzyme tightly covalently and forms a stable complex. •• An irreversible inhibitor cannot be released by dilution or dialysis or simply by increasing the concentration of substrate. 10-99
  • 98. • Irreversible inhibitors can be divided into three categories: • i. Group specific inhibitors • ii. Substrate analogue inhibitor or affinity labels • iii. Suicide inhibitor or mechanism based inactivation. 100
  • 99. •In terms of enzyme kinetics, the effect of an irreversible inhibitor is like that of the reversible noncompetitive inhibitors resulting in a decreased in Vmax but having no effect on the Km (Table 6.5) 101
  • 100. i. Group Specific Irreversible Inhibitor • These inhibitors react with specific R-groups (side chain) of amino acid residues in the active site of enzyme. Examples of group specific irreversible inhibitors are: eg . Di-isopropylphosphofluoride (DIPF) 102
  • 101. • DIPF (Di-isopropylphosphofluoride)can inhibit an enzyme acetylcholine esterase by covalently reacting with hydroxyl group of a serine residue present at the active site of the enzyme (Figure 6.15) 103
  • 102. 104 DIPF has also been found to inhibit trypsin, chymotrypsin, elastase and phosphoglucomutase
  • 103. • eg. Iodoacetamide and heavy metals • Iodoacetamide and heavy metals like, Pb2+, Ag+, Hg2+, etc. which react with sulfhydryl (-SH) group of cysteine residues present at the active site of the enzyme and makes them inactive. Thiol Group of cystiene Hydroxyl Group of Serine Imidazol Group of Histidine 105
  • 104. ii. Substrate analogue inhibitor or affinity labels • Substrate analogues or affinity labels are molecules that are structurally similar to the substrate. • These substrate analogues possess a highly reactive group which is not present in the natural substrate. 106
  • 105. • The reactive group of substrate analogues covalently reacts with amino acid residues of the active site of the enzyme and permanently block the active site of the enzyme, e.g. 3-Bromoacetol phosphate (BAP). • BAP is a substrate analogue of the normal substrate dihydroxyacetone phosphate (DHAP) for the enzyme phosphotriose isomerase of glycolysis. 107
  • 106. iii. Suicide inhibitor or mechanism based inactivation. • These compounds are relatively unreactive until they bind to the active site of a specific enzyme. • On binding to the active site of the enzyme they carry out the first few catalytic activities of the normal enzyme reaction. 108
  • 107. • Instead of being transformed into a normal product, however, the inhibitor is converted to a very reactive compound that combines irreversibly with the enzyme leading to its irreversible inhibition. 109
  • 108. • The enzyme literally commits suicide. These are also called mechanism based inactivation because they utilize the normal enzyme reaction mechanism to inactivate the enzyme. • These inhibitors act as drugs for example. Penicillin Aspirin Disulfiram 110
  • 109. • Penicillin • Penicillin irreversibly inactivates an essential bacterial enzyme glycopeptidyl transpeptidase involved in the formation of bacterial cell wall. • Aspirin • Aspirin inactivates an enzyme cyclo-oxygenase which catalyzes the first reaction in the biosynthesis of prostaglandins from arachidonic acid. • Disulfiram(antabuse) • Disulfiram is a drug used in the treatment of alcoholism. It inhibits irreversibly aldehyde dehydrogenase enzyme resulting in accumulation of acetaldehyde in the body. 111
  • 110. 112
  • 111. Clinical Application of Enzyme Inhibitor • Enzyme inhibitors have therapeutic applications. Most antibiotics and anticancer drugs that are used therapeutically are either competitive inhibitor or mechanism based suicide inhibitor. Some commonly used drugs that exert their effects by inhibiting enzymes are described in Table 6.4. 113
  • 112. 114
  • 113. ALLOSTERIC ENZYME •Allosteric enzyme is a regulatory enzyme. The term allosteric derives from Greek word, allo means other and steros means space or site. Allosteric enzymes are those having other site. 115
  • 114. • Like all enzymes, allosteric enzymes have active site for binding of the substrate but they also have one or more regulatory or (allosteric) sites for binding regulatory metabolites which is called modulator. 116
  • 115. • Modulators that inhibit enzyme activity are termed negative modulators. Whereas those that increase enzyme activity are called positive modulators. 117
  • 116. Feedback Allosteric Inhibition • In some multienzyme systems, the first enzyme of the sequence is the regulatory enzyme and has distinctive characteristics. • It is inhibited by the end product of the multienzyme system 118
  • 117. 119
  • 118. 120
  • 119. ISOENZYME • Isoenzymes or isozymes are multiple forms (isomers) of the same enzyme that catalyze the same biochemical reaction. Isoenzymes show different chemical and physical properties like electrophoretic mobility and kinetic properties. • Not all enzymes have isoenzymes 121
  • 120. • For example: 1. Lactate dehydrogenase (LDH) 2. Creatine kinase (CK) (formerly called creatine phosphokinase (CPK). • Some more examples of isoenzymes are given in Table 6.7 122
  • 121. 123
  • 122. • Lactate Dehydrogenase (LDH) Lactate dehydrogenase is a tetrameric enzyme that catalyzes the oxidation of L-lactate to pyruvate. • LDH has five isoenzymes: – LDH1 – LDH2 – LDH3 – LDH4 – LDH5. • Since LDH is a tetramer, made up of two types of polypeptide M (muscle) type and H (heart) type, five combinations are possible with varying ratios of two kinds of polypeptides (Table 6.8). 124
  • 123. • • Five isoenzymes of LDH can be detected by electrophoresis as they have different electrophoretic mobilities. • • LDH1 is the fastest moving fraction towards the anode and LDH5 is the slowest moving isoenzyme of LDH (Figure 6.17). 125
  • 124. Clinical Applications of LDH • The LDH isoenzyme analysis may be useful in the following clinical situations (Table 6.8): • • Significant elevation of LDH1 and LDH2 (LDH1>LDH2) occurs within 24 to 48 hours after myocardial infarction. • • Predominant elevation of LDH2 and LDH3 occur in leukemia. LDH3 is the main isoenzyme elevated due to malignancy of many tissues. • • Elevation of LDH5 occurs after damage to the liver or skeletal muscle. 126
  • 125. • Creatine Kinase (CK) • • Creatine kinase isoenzymes are dimer that are made up of two types of polypeptide chains, which may be either M (muscle) type or B (brain) type, generating three isoenzymes (Table 6.8). • – CK1 (BB) : It is present in the brain • – CK2 (MB) : Cardiac tissue is the only tissue which has the mixed MB (CK2) isoenzyme • – CK3 (MM) : It is present in skeletal muscle. 127
  • 126. • Clinical Application • • CK1 may be elevated in neonates particularly in damaged brain or very low birth weight newborn. • • Increased level of CK2 in blood is characteristic of damage of heart tissue from myocardial infarction because cardiac tissue is the only tissue which has the mixed MB (CK2) isoenzyme. • • Elevated levels of CK3 in serum occur in all types of dystrophies and myopathies 128
  • 127. 129
  • 128. • CLINICAL SIGNIFICANCE OF ENZYMES • Certain enzymes are used: • For the diagnosis of the disease • As therapeutic agents • As analytical reagents. • Diagnostic Use of Enzymes enzymes are known as marker of cellular damage and their measurement in plasma is used in the investigation of diseases of liver, heart, skeletal muscle, the biliary tract and the pancreas. 130
  • 129. The enzymes that are found in plasma can be categorized into two major groups : The plasma specific enzyme and the plasma nonspecific enzyme. • The plasma specific enzymes are present in higher concentration in plasma than in most tissues; e.g. – The enzymes involved in blood coagulation – Ferroxidase – Pseudocholinesterase – Lipoprotein lipase. • These enzymes are clinically of interest when their concentration decreases in plasma. 131
  • 130. • The plasma nonspecific enzymes are present in very high concentration in tissues than in the plasma. Estimation of plasma nonspecific enzymes is very important for the diagnosis of several disease. • • The important enzymes useful for the diagnosis of specific diseases are listed in Table 6.9.. 132
  • 131. 133
  • 132. 134
  • 133. • Enzyme Assay in Myocardial Infarction The enzymes’ assay, which are most helpful in the diagnosis of myocardial infarction are listed in Table 6.10 and Figure 6.18. 135
  • 134. 136
  • 135. 137
  • 136. • Therapeutic Use of Enzymes Some enzymes are used in the treatment of some diseases of human being. For example: • • Bacterial asparginase is used in the treatment of some types of leukemia. Asparginase which hydrolyzes aspargine to aspartic acid. Aspargine is necessary for the formation of leukemic white cell. • • Chymotrypsin: Used for dissolving ligaments of the lens during the extraction of cataract. • • Collagenase: Used for debridement (cleaning of wound by removing dead tissue) of dermal ulcers and severe burns. 138
  • 137. • • Fibrinolysin: It is used in the venous thrombosis, pulmonary and arterial embolism (blood clot). • • Hyaluronidase: It is used to promote the rapid absorption of drugs injected subcutaneously. It acts by increasing tissue permeability. It is used in the treatment of traumatic or postoperative edema. • • Lysozyme (an antibiotic) found in human tears and egg white, is used in the infection of eye. It has antibacterial action, it acts on cellulose of bacteria. 139
  • 138. • • Penicillinase (bacterial enzyme) is used for the treatment of persons who are allergic to penicillin, penicillinase destroys penicillin. • • Rennin is used for the treatment of gastric achylia. • • Streptokinase: Streptokinase and urokinase are used in myocardial infarction to dissolve blood clot or purulent (containing pus) material. It causes fibrinolysis. 140
  • 139. • • Trypsin: It is a proteolytic enzyme and is used to clean the wounds by dissolving purulent material and in the treatment of acute thrombophlebitis to dissolve the blood clot. • • Pepsin, trypsin peptidase, lipase, amylase elastase and cellulase are used in gastrointestinal tract (GIT) disorders and chronic pancreatitis. 141
  • 140. • Analytical Use of Enzymes • • Enzymes can be used as reagents and labels. • • In addition to measurement of serum enzyme activity for the diagnosis and management of disease, enzymes are widely used in the clinical laboratory as reagents for the estimation of serum constituents. Some examples are given in Table 6.11. • • Many enzymes have been used as the label in various immunoassays (enzyme linked immunosorption assay, ELISA) for determining the serum concentration of drugs, hormones or other compounds of interest. Commonly used label enzymes are: – Glucose-6- phosphate dehydrogenase – Alkaline phosphatase – β- galactosidase – Peroxidase. 142
  • 141. 143
  • 142. How enzyme are regulate In detail 144
  • 143. 145
  • 144. 146
  • 145. 147
  • 146. 148

Editor's Notes

  1. 3