Types of enzyme inhibition
Mentor: Dr. Gaurav Shah
By: Kashvi N. Jadia
Densi M. Patel
Sem 7 Msc Biotechnology
TYPES OF ENZYME INHIBITION
Types of enzyme inhibition
Reversible
inhibition
Irreversible
inhibition
Suicidal
inhibition
Group
specific
inhibition
Non
competitive
inhibition
Competitive
inhibition
Reversible inhibition:
● Reversible inhibitors bind to an enzyme in a reversible fashion and
can be removed by dialysis (or simply dilution) to restore full
enzymatic activity.
● Reversible inhibitors usually rapidly form an equilibrium system
with an enzyme to show a definite degree of inhibition.
Competitive inhibition:
● The substrate and the inhibitor exhibit structural similarity,
due to which they compare for same active site.
● Also called structural analogue.
● Function by decreasing the proportion of enzyme
available for substrate binding.
● Can be relieved by increasing the substrate
concentration.
● Le chatelier's principle
● Degree of inhibition can be calculated by following
equation
Degree of inhibition= I = 1- Vi/V0 x 100
MM plot and LB plot for competitive inhibition
Examples of competitive inhibitors with enzymes:
ENZYME INHIBITOR
Succinate dehydrogenase Malonate
Folate synthesising enzyme Sulphonamide
Dihydrofolate reductase Methotrexate
Xanthine oxidase Allopurinol
Malonate/Oxaloacetate inhibits succinate dehydrogenase in TCA
cycle.
Methotrexate inhibits
dihydrofolate (DHF)
reductase
Tetra hydro folate
Allopurinol inhibits Xanthine
oxidase in purine metabolic
pathway
THF - Tetrahydrofolate
● Metal ions also acts as competitive inhibitor
● Sulfonamide inhibits folate biosynthesis
Application of competitive inhibition:
■ Competitive inhibitors are used to treat intoxication caused by the
product of a particular enzyme. For example, methanol poisoning and
ethyl glycol poisoning can be treated by inhibiting alcohol
dehydrogenase using ethanol as an inhibitor.
■ Sulfonamide is used to inhibit bacterial growth by preventing folate
synthesis, thereby preventing folate-catalyzed one carbon transfer
reactions.
■ Allopurinol is used to treat gout. Gout is a disease characterized by
high serum levels of uric acid, the final product of purine
degradation. It is formed by xanthine oxidase activity. Allopurinol
is used to treat gout by impairing the xanthine-oxidase catalyzed
synthesis of uric acid
■ Methyl pyrazole is used to treat metabolic acidosis, depression,
and renal stone formation by inhibiting the formation of glycolic
acid and oxalic acid.
Non competitive inhibitor:
● The substrate and inhibitor have no structural similarity, hence do
not compete for the same active site.
● Non-competitive inhibitors bind the allosteric site (regulatory
site) of the enzyme and alters the three-dimensional structure of
the active site.
● A noncompetitive inhibitor binds either to the free enzyme or to
the enzyme substrate complex.
● Function by decreasing the turnover number of the enzyme.
● Unlike competitive inhibition, non-competitive inhibition cannot be
relieved at a higher substrate concentration, so the V cannot be attained.
● Binding of non competitive inhibitor induce change in the shape of Active
site, so the enzyme cannot bind to the substrate.
● The enzyme will remain inhibited until the non-competitive inhibitor
leaves the regulatory site.
● The inhibitor effectively lowers the concentration of active enzyme and
hence lowers Vmax. There is almost no effect on Km, however.
MM plot and LB plot for noncompetitive inhibition:
Examples:
● Heavy metal ions
● EDTA
● Fluoride
● Hydrogen sulphide
● Cyanide
● Pepstatin
Heavy metal
● Heavy metals Enzymes containing active sulphur, oxygen, and nitrogen are non
competitively inhibited by heavy metal ions like Pb, Hg, and Ag.
● Interact with the thiol group of the enzyme forming mercaptide complex which is
inactive.
E - SH + Hg+
● Pb is known to inhibit porphobilinogen synthase and ferrochelatase by
binding to the active thiol group.
● This enzyme is also called as 8-aminolevulinate dehydratase, Ferrochelatase
catalyzes the synthesis of heme from protoporphyrin IX by inserting ferrous
ion to the substrate (last step of the heme biosynthetic pathway).
E - S -H + H+ (Inactive mercaptide complex)
Fluoride
● Fluoride Aldolase is an enzyme that converts fructose-1,6-bisphosphate to
dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3-phosphate
(G3P) during the fourth step of glycolytic pathway.
● Fluoride ion inhibits aldolase by binding to active Mg or Mn. Thus, fluoride
is used as preservative for blood glucose analysis.
Hydrogen sulphide and cyanide
● Hydrogen sulphide (H2S) and cyanide (CN) inhibition-containing
enzymes like superoxide dismutase (SOD) and catalase (CAT).
● Super oxide dismutase catalyzes the dismutation of superoxide
anion radical forming hydrogen peroxide. Catalase catalyzes the
detoxification of hydrogen peroxide to water and oxygen.
Pepstatin
Pepstatin non-competitively inhibits renin.
EDTA
EDTA (chelating agent) functions as a non-competitive inhibitor of
metalloenzymes by removing the metal ion cofactors like Mg+2 and Ca+2.
Applications of non-competitive inhibitors
● To relieve heavy metal poisoning, e.g. lead poisoning and mercury
poisoning
● To relieve cyanide poisoning
● Fluoride is used as blood preservative for subsequent analysis of glucose.
● In chronic disease like type 2 diabetes (diabetes mellitus).
(https://www.ncbi.nlm.nih.gov/books/NBK545242/#:~:text=In%20noncompetitive%20inhibition%2C%20the%20inhibitor%20binds%20at%20an%20al
losteric%20site,presence%20of%20a%20bound%20substrate.)
Uncompetitive inhibition
Uncompetitive inhibitors have no affinity for substrates. It binds to the
allosteric site of the enzyme-substrate complex only, but not to the free
enzyme.
MM plot and LB plot for uncompetitive inhibition
Examples for uncompetitive inhibition
● Uncompetitive inhibition is rare in mono substrate
reactions, but it is common in bisubstrate reactions showing
double displacement mechanism
● L-Phenylalanine L-phenylalanine is an uncompetitive
inhibitor for intestinal alkaline phosphatase.
Refrences
➢ Reference books:1) Enzymology by T.Devasena
2)Biochemistry by U. Satyanarayana and U. Chakrapani
➢ https://www.ncbi.nlm.nih.gov/books/NBK545242/#:~:text=In%20noncomp
etitive%20inhibition%2C%20the%20inhibitor%20binds%20at%20an%20all
osteric%20site,presence%20of%20a%20bound%20substrate.
enzyme inhibition.pptx

enzyme inhibition.pptx

  • 1.
    Types of enzymeinhibition Mentor: Dr. Gaurav Shah By: Kashvi N. Jadia Densi M. Patel Sem 7 Msc Biotechnology
  • 2.
    TYPES OF ENZYMEINHIBITION Types of enzyme inhibition Reversible inhibition Irreversible inhibition Suicidal inhibition Group specific inhibition Non competitive inhibition Competitive inhibition
  • 3.
    Reversible inhibition: ● Reversibleinhibitors bind to an enzyme in a reversible fashion and can be removed by dialysis (or simply dilution) to restore full enzymatic activity. ● Reversible inhibitors usually rapidly form an equilibrium system with an enzyme to show a definite degree of inhibition.
  • 4.
    Competitive inhibition: ● Thesubstrate and the inhibitor exhibit structural similarity, due to which they compare for same active site. ● Also called structural analogue.
  • 6.
    ● Function bydecreasing the proportion of enzyme available for substrate binding. ● Can be relieved by increasing the substrate concentration. ● Le chatelier's principle ● Degree of inhibition can be calculated by following equation Degree of inhibition= I = 1- Vi/V0 x 100
  • 8.
    MM plot andLB plot for competitive inhibition
  • 9.
    Examples of competitiveinhibitors with enzymes: ENZYME INHIBITOR Succinate dehydrogenase Malonate Folate synthesising enzyme Sulphonamide Dihydrofolate reductase Methotrexate Xanthine oxidase Allopurinol
  • 10.
    Malonate/Oxaloacetate inhibits succinatedehydrogenase in TCA cycle.
  • 11.
    Methotrexate inhibits dihydrofolate (DHF) reductase Tetrahydro folate Allopurinol inhibits Xanthine oxidase in purine metabolic pathway THF - Tetrahydrofolate
  • 12.
    ● Metal ionsalso acts as competitive inhibitor ● Sulfonamide inhibits folate biosynthesis
  • 13.
    Application of competitiveinhibition: ■ Competitive inhibitors are used to treat intoxication caused by the product of a particular enzyme. For example, methanol poisoning and ethyl glycol poisoning can be treated by inhibiting alcohol dehydrogenase using ethanol as an inhibitor. ■ Sulfonamide is used to inhibit bacterial growth by preventing folate synthesis, thereby preventing folate-catalyzed one carbon transfer reactions.
  • 14.
    ■ Allopurinol isused to treat gout. Gout is a disease characterized by high serum levels of uric acid, the final product of purine degradation. It is formed by xanthine oxidase activity. Allopurinol is used to treat gout by impairing the xanthine-oxidase catalyzed synthesis of uric acid ■ Methyl pyrazole is used to treat metabolic acidosis, depression, and renal stone formation by inhibiting the formation of glycolic acid and oxalic acid.
  • 15.
    Non competitive inhibitor: ●The substrate and inhibitor have no structural similarity, hence do not compete for the same active site. ● Non-competitive inhibitors bind the allosteric site (regulatory site) of the enzyme and alters the three-dimensional structure of the active site. ● A noncompetitive inhibitor binds either to the free enzyme or to the enzyme substrate complex.
  • 17.
    ● Function bydecreasing the turnover number of the enzyme. ● Unlike competitive inhibition, non-competitive inhibition cannot be relieved at a higher substrate concentration, so the V cannot be attained. ● Binding of non competitive inhibitor induce change in the shape of Active site, so the enzyme cannot bind to the substrate. ● The enzyme will remain inhibited until the non-competitive inhibitor leaves the regulatory site. ● The inhibitor effectively lowers the concentration of active enzyme and hence lowers Vmax. There is almost no effect on Km, however.
  • 18.
    MM plot andLB plot for noncompetitive inhibition:
  • 19.
    Examples: ● Heavy metalions ● EDTA ● Fluoride ● Hydrogen sulphide ● Cyanide ● Pepstatin
  • 20.
    Heavy metal ● Heavymetals Enzymes containing active sulphur, oxygen, and nitrogen are non competitively inhibited by heavy metal ions like Pb, Hg, and Ag. ● Interact with the thiol group of the enzyme forming mercaptide complex which is inactive. E - SH + Hg+ ● Pb is known to inhibit porphobilinogen synthase and ferrochelatase by binding to the active thiol group. ● This enzyme is also called as 8-aminolevulinate dehydratase, Ferrochelatase catalyzes the synthesis of heme from protoporphyrin IX by inserting ferrous ion to the substrate (last step of the heme biosynthetic pathway). E - S -H + H+ (Inactive mercaptide complex)
  • 21.
    Fluoride ● Fluoride Aldolaseis an enzyme that converts fructose-1,6-bisphosphate to dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3-phosphate (G3P) during the fourth step of glycolytic pathway. ● Fluoride ion inhibits aldolase by binding to active Mg or Mn. Thus, fluoride is used as preservative for blood glucose analysis.
  • 22.
    Hydrogen sulphide andcyanide ● Hydrogen sulphide (H2S) and cyanide (CN) inhibition-containing enzymes like superoxide dismutase (SOD) and catalase (CAT). ● Super oxide dismutase catalyzes the dismutation of superoxide anion radical forming hydrogen peroxide. Catalase catalyzes the detoxification of hydrogen peroxide to water and oxygen.
  • 23.
    Pepstatin Pepstatin non-competitively inhibitsrenin. EDTA EDTA (chelating agent) functions as a non-competitive inhibitor of metalloenzymes by removing the metal ion cofactors like Mg+2 and Ca+2.
  • 24.
    Applications of non-competitiveinhibitors ● To relieve heavy metal poisoning, e.g. lead poisoning and mercury poisoning ● To relieve cyanide poisoning ● Fluoride is used as blood preservative for subsequent analysis of glucose. ● In chronic disease like type 2 diabetes (diabetes mellitus). (https://www.ncbi.nlm.nih.gov/books/NBK545242/#:~:text=In%20noncompetitive%20inhibition%2C%20the%20inhibitor%20binds%20at%20an%20al losteric%20site,presence%20of%20a%20bound%20substrate.)
  • 25.
    Uncompetitive inhibition Uncompetitive inhibitorshave no affinity for substrates. It binds to the allosteric site of the enzyme-substrate complex only, but not to the free enzyme.
  • 27.
    MM plot andLB plot for uncompetitive inhibition
  • 28.
    Examples for uncompetitiveinhibition ● Uncompetitive inhibition is rare in mono substrate reactions, but it is common in bisubstrate reactions showing double displacement mechanism ● L-Phenylalanine L-phenylalanine is an uncompetitive inhibitor for intestinal alkaline phosphatase.
  • 30.
    Refrences ➢ Reference books:1)Enzymology by T.Devasena 2)Biochemistry by U. Satyanarayana and U. Chakrapani ➢ https://www.ncbi.nlm.nih.gov/books/NBK545242/#:~:text=In%20noncomp etitive%20inhibition%2C%20the%20inhibitor%20binds%20at%20an%20all osteric%20site,presence%20of%20a%20bound%20substrate.

Editor's Notes