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EFFICIENT EXECUTION METHODS OF PIVOTING FOR BULK
EXTRACTION OF ENTITY-ATTRIBUTE-VALUE-MODELED DATA
ABSTRACT
Entity-Attribute-Value (EAV) tables are widely used to store data in electronic medical
records and clinical study data management systems. Before they can be used by various
analytical (e.g., data mining and machine learning) programs, EAV-modeled data usually must
be transformed into conventional relational table format through pivot operations. This time-
consuming and resource-intensive process is often performed repeatedly on a regular basis, e.g.,
to provide a daily refresh of the content in a clinical data warehouse. Thus, it would be beneficial
to make pivot operations as efficient as possible. In this paper, we present three techniques for
improving the efficiency of pivot operations: (1) filtering out EAV tuples related to unneeded
clinical parameters early on, (2) supporting pivoting across multiple EAV tables, and (3)
conducting multi-query optimization. We demonstrate the effectiveness of our techniques
through implementation. We show that our optimized execution method of pivoting using these
techniques significantly outperforms the current basic execution method of pivoting. Our
techniques can be used to build a data extraction tool to simplify the specification of and improve
the efficiency of extracting data from the EAV tables in electronic medical records and clinical
study data management systems.

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EFFICIENT EXECUTION METHODS OF PIVOTING FOR BULK EXTRACTION OF ENTITY-ATTRIBUTE-VALUE-MODELED DATA

  • 1. EFFICIENT EXECUTION METHODS OF PIVOTING FOR BULK EXTRACTION OF ENTITY-ATTRIBUTE-VALUE-MODELED DATA ABSTRACT Entity-Attribute-Value (EAV) tables are widely used to store data in electronic medical records and clinical study data management systems. Before they can be used by various analytical (e.g., data mining and machine learning) programs, EAV-modeled data usually must be transformed into conventional relational table format through pivot operations. This time- consuming and resource-intensive process is often performed repeatedly on a regular basis, e.g., to provide a daily refresh of the content in a clinical data warehouse. Thus, it would be beneficial to make pivot operations as efficient as possible. In this paper, we present three techniques for improving the efficiency of pivot operations: (1) filtering out EAV tuples related to unneeded clinical parameters early on, (2) supporting pivoting across multiple EAV tables, and (3) conducting multi-query optimization. We demonstrate the effectiveness of our techniques through implementation. We show that our optimized execution method of pivoting using these techniques significantly outperforms the current basic execution method of pivoting. Our techniques can be used to build a data extraction tool to simplify the specification of and improve the efficiency of extracting data from the EAV tables in electronic medical records and clinical study data management systems.