This document describes the development of a new protocol for synthesizing crosslinked microgels via UV-initiated free radical polymerization of miniemulsions at ambient temperature or below. The microgels are formed from butyl acrylate, ethylene glycol dimethacrylate, and a catalyst-precursor ligand. The catalytic activity of the microgels is demonstrated through the hydrolysis of 4-methylumbelliferyl β-D-galactopyranoside. A correlation is observed between the crosslinking content of the microgels and their catalytic proficiency, with peak performance at 40 mol% crosslinking.
Continuously flow microwave pre-treatment for enhanced anaerobic biodegradabi...Agriculture Journal IJOEAR
— Our research has focused on the investigation of the applicability of continuously flow microwave pre-treatment process for anaerobic digestion of dairy industry sludge. In the continuously flow operation effects of microwave specific process parameters, i.e. specific irradiated energy and microwave power level, were examined on the biogas yield and anaerobic digestion rate. Furthermore, the efficiency of process was characterized based on energetic analysis, as well. Our results show, that depend on the irradiated energy level the microwave power has effect on biogas yield, and determine the biodegradation rate, as well. Higher energy irradiation or higher power has been manifested in enhanced anaerobic digestion, but over a certain value of them led to worsened methane content. Considering the results obtained from energetic analysis can be concluded, that microwave pre-treatment followed by anaerobic digestion is efficient if irradiated energy was kept lower level (100 kJ L-1 , in present experiments) with microwave power levels of 536 W, or 700W, respectively. Too high energy intensity at high power level, or too low microwave power, independently from the extent of irradiated energy, led to higher energy demand of pre-treatment, than can be recovered as energy content of surplus biogas.
This document discusses microwave-assisted organic chemistry (MORE chemistry) as an eco-friendly technology. It provides advantages of MORE chemistry such as being easy, effective, and economic while requiring less solvents. The document then discusses how microwaves affect molecular rotation but not structure in organic molecules. It also outlines benefits of microwave-assisted organic synthesis like faster reactions, higher temperatures, and energy efficiency. Examples of reactions that can be conducted include hydrolysis, oxidation, esterification, and decarboxylation. In conclusion, the document discusses how MORE chemistry can improve industrial organic synthesis in a cost-effective and environmentally-friendly manner.
This document reports on a study investigating the influence of sodium carboxymethylcellulose (NaCMC) on the aggregation behavior of aqueous solutions of 1-hexadecyl-3-methylimidazolium chloride (C16MeImCl), a cationic surface active ionic liquid (SAIL). Electrical conductivity and surface tension measurements were used to study C16MeImCl aggregation in the presence of NaCMC. Two characteristic concentrations were identified before free C16MeImCl micelles form: the critical aggregation concentration and the polymer saturation concentration. The effects of temperature, NaCMC concentration, and NaCMC charge density on C16MeImCl self-aggregation were analyzed. Thermodynamic parameters of C16MeImCl mic
The document discusses microwave-assisted organic synthesis. It begins with an introduction and overview of green chemistry approaches like ultrasound and microwave-assisted synthesis. It then covers the basics of microwave irradiation including the mechanisms of microwave heating and how it differs from conventional heating. Several examples of common organic reactions that can be performed using microwave irradiation are provided, along with the merits and demerits of the technique.
— Oligoguanidine with chain extension were synthesized by condensation and cross-linking polymerizations in an attempt to increase molecular weight and charge density of the anti microbial oligoguanidine. The reactions are procedure at 170 o C for 5h with ratio molar of HMDA: GHC = 1: 1.1, refined by vacuum filter at 60 o C. The Oligoguanidine OHMG.HCl synthesized has molecular weight equal 521 g/mol, chain structure and good water solubility. The comparison results of the antimicrobial activities of oligoguanidine with chloramine B indicated that MIC index of OHMG.HCl is 5ppm during MIC index of chloramine B is 50 ppm; MBC of OHMG.HCl is 12 minutes and MBC of chloramine B is 11 minutes; The SEM, TEM imagines exhibited clear biocide, low residue microorganism of OHMG.HCl. The LC-MS spectrum indicates the presence of haloacetic acid following the bactericidal action of chloramphen B, while OHGM.HCl is not available. This result confirms the environmental friendliness of oligoguanidine.
This document reviews the use of microwave heating in organic synthesis. It begins with a brief history of heating methods in chemistry and an introduction to microwave theory. Key points are that microwaves directly couple with polar molecules to efficiently and uniformly heat reaction mixtures from the inside. This enables faster reactions and new reactivity compared to conventional thermal heating. The document discusses potential "microwave effects" including selective heating and hotspots, though most rate increases are due to purely thermal effects. It also reviews common microwave processing techniques like solventless reactions and highlights recent applications of microwave heating in areas like transition metal catalysis and combinatorial synthesis.
JBEI Research Highlights - February 2017 Irina Silva
This study analyzed how versatile peroxidase (VP) from B. adusta catalyzes the degradation of lignin β-ether compounds under different reaction conditions. The researchers found that:
1) VP first produces a neutral radical in phenolic lignin dimers via oxidation, followed by polymerization or depolymerization depending on conditions.
2) The functional group at position 5 of the guaiacyl group determined whether polymerization or depolymerization occurred.
3) The degradation pathway for phenolic β-O-4 lignin was Cα-aryl cleavage rather than Cα-Cβ cleavage.
Continuously flow microwave pre-treatment for enhanced anaerobic biodegradabi...Agriculture Journal IJOEAR
— Our research has focused on the investigation of the applicability of continuously flow microwave pre-treatment process for anaerobic digestion of dairy industry sludge. In the continuously flow operation effects of microwave specific process parameters, i.e. specific irradiated energy and microwave power level, were examined on the biogas yield and anaerobic digestion rate. Furthermore, the efficiency of process was characterized based on energetic analysis, as well. Our results show, that depend on the irradiated energy level the microwave power has effect on biogas yield, and determine the biodegradation rate, as well. Higher energy irradiation or higher power has been manifested in enhanced anaerobic digestion, but over a certain value of them led to worsened methane content. Considering the results obtained from energetic analysis can be concluded, that microwave pre-treatment followed by anaerobic digestion is efficient if irradiated energy was kept lower level (100 kJ L-1 , in present experiments) with microwave power levels of 536 W, or 700W, respectively. Too high energy intensity at high power level, or too low microwave power, independently from the extent of irradiated energy, led to higher energy demand of pre-treatment, than can be recovered as energy content of surplus biogas.
This document discusses microwave-assisted organic chemistry (MORE chemistry) as an eco-friendly technology. It provides advantages of MORE chemistry such as being easy, effective, and economic while requiring less solvents. The document then discusses how microwaves affect molecular rotation but not structure in organic molecules. It also outlines benefits of microwave-assisted organic synthesis like faster reactions, higher temperatures, and energy efficiency. Examples of reactions that can be conducted include hydrolysis, oxidation, esterification, and decarboxylation. In conclusion, the document discusses how MORE chemistry can improve industrial organic synthesis in a cost-effective and environmentally-friendly manner.
This document reports on a study investigating the influence of sodium carboxymethylcellulose (NaCMC) on the aggregation behavior of aqueous solutions of 1-hexadecyl-3-methylimidazolium chloride (C16MeImCl), a cationic surface active ionic liquid (SAIL). Electrical conductivity and surface tension measurements were used to study C16MeImCl aggregation in the presence of NaCMC. Two characteristic concentrations were identified before free C16MeImCl micelles form: the critical aggregation concentration and the polymer saturation concentration. The effects of temperature, NaCMC concentration, and NaCMC charge density on C16MeImCl self-aggregation were analyzed. Thermodynamic parameters of C16MeImCl mic
The document discusses microwave-assisted organic synthesis. It begins with an introduction and overview of green chemistry approaches like ultrasound and microwave-assisted synthesis. It then covers the basics of microwave irradiation including the mechanisms of microwave heating and how it differs from conventional heating. Several examples of common organic reactions that can be performed using microwave irradiation are provided, along with the merits and demerits of the technique.
— Oligoguanidine with chain extension were synthesized by condensation and cross-linking polymerizations in an attempt to increase molecular weight and charge density of the anti microbial oligoguanidine. The reactions are procedure at 170 o C for 5h with ratio molar of HMDA: GHC = 1: 1.1, refined by vacuum filter at 60 o C. The Oligoguanidine OHMG.HCl synthesized has molecular weight equal 521 g/mol, chain structure and good water solubility. The comparison results of the antimicrobial activities of oligoguanidine with chloramine B indicated that MIC index of OHMG.HCl is 5ppm during MIC index of chloramine B is 50 ppm; MBC of OHMG.HCl is 12 minutes and MBC of chloramine B is 11 minutes; The SEM, TEM imagines exhibited clear biocide, low residue microorganism of OHMG.HCl. The LC-MS spectrum indicates the presence of haloacetic acid following the bactericidal action of chloramphen B, while OHGM.HCl is not available. This result confirms the environmental friendliness of oligoguanidine.
This document reviews the use of microwave heating in organic synthesis. It begins with a brief history of heating methods in chemistry and an introduction to microwave theory. Key points are that microwaves directly couple with polar molecules to efficiently and uniformly heat reaction mixtures from the inside. This enables faster reactions and new reactivity compared to conventional thermal heating. The document discusses potential "microwave effects" including selective heating and hotspots, though most rate increases are due to purely thermal effects. It also reviews common microwave processing techniques like solventless reactions and highlights recent applications of microwave heating in areas like transition metal catalysis and combinatorial synthesis.
JBEI Research Highlights - February 2017 Irina Silva
This study analyzed how versatile peroxidase (VP) from B. adusta catalyzes the degradation of lignin β-ether compounds under different reaction conditions. The researchers found that:
1) VP first produces a neutral radical in phenolic lignin dimers via oxidation, followed by polymerization or depolymerization depending on conditions.
2) The functional group at position 5 of the guaiacyl group determined whether polymerization or depolymerization occurred.
3) The degradation pathway for phenolic β-O-4 lignin was Cα-aryl cleavage rather than Cα-Cβ cleavage.
CATALYSIS, TYPES OF CATALYSIS FOR CHEMISTRY STUDENTSShikha Popali
CATALYSIS IS A TYPE OF CHEMICAL REACTION. HERE IN THIS PREASENTATION THE CATALYSIS AND ITS TYPES ARE EXPLAINED IN DETAIL WITH ITS ADVANTAGES AND DISADVANTAGES.
Ijpar 14 617 manjusinghA label-free electrochemical protein sensor of perchlo...pharmaindexing
This document describes the development of a label-free electrochemical protein sensor using perchloric acid doped polyaniline (PANI-PA). PANI-PA films were fabricated on glass substrates using in situ polymerization. The sensor detects changes in surface potential when proteins interact with the charged PANI-PA film, allowing for label-free potentiometric protein detection. The sensor was tested for its ability to detect lysozyme, bovine serum albumin, and thaumatin proteins. PANI-PA was found to have high conductivity even at neutral pH values, making it suitable for protein sensing under physiological conditions. The sensor has potential for integration into implantable biosensing systems and for recognizing specific protein-protein
MERITS OF MICROWAVE ASSISTED REACTIONS
DEMERITS OF MICROWAVE ASSISTED REACTIONS
MECHANISM OF MICROWAVE HEATING
EFFECTS OF SOLVENTS IN MICROWAVE ASSISTED SYNTHESIS
MICROWAVE VERSUS CONVENTIONAL SYNTHESIS
MICROWAVE INSTRUMENTATION
VARIOUS TYPES OF MICROWAVE ASSISTED ORGANIC REACTIONS
APPLICATIONS OF MICROWAVE ASSISTED REACTIONS
This document summarizes research into optimizing the growth medium in a microbial fuel cell to maximize electricity production using Paenibacillus bacteria. Experiments tested different concentrations of glucose as the carbon source and found that 5g/L generated the highest voltage of 910mV. Testing over time found voltage increased with time, reaching a maximum of 750mV after 7 hours. Increasing the carbohydrate concentration initially increased voltage, but higher concentrations beyond 5g/L resulted in lower voltages. The research aims to utilize waste water from bread production as the substrate to generate electricity through bacterial conversion of sugars to protons, electrons, and carbon dioxide.
Water as a solvent in microwave assisted organic synthesisPrashantChavan93
Prashant Chavan
Reserach Scholar
M.S.(Pharm) in Medicinal Chemistry
National Institute of Pharmaceutical Education and Research Mohali, Punjab (India) 160062
mcm20_prashant@niper.ac.in
The document describes three studies related to biofuels and bioproducts:
1) A study characterized a novel lactam biosensor from Pseudomonas putida with unprecedented sensitivity for valerolactam and caprolactam. Through engineering, they developed biosensors with a wide dynamic range.
2) A study used quantum calculations and simulations to understand how Keggin-type polyoxometalate ionic liquids dissolve lignin. Calculations showed interactions between the ionic liquid and lignin model compound.
3) A study determined the mechanism of regioselectivity in an unusual bacterial acyl-CoA dehydrogenase, TcsD, which catalyzes terminal alkene formation. Struct
Microwave assisted reaction km komal wahane k3komalwahane
Microwave assisted organic reactions can occur using solvents, under solvent-free conditions on solid supports, or using neat reactants. Reactions see increased rates due to microwave dielectric heating causing molecular polarization and rotation, generating heat. Key advantages are rapid reactions, high purity products, improved yields, and wider usable temperature ranges. Challenges include sudden temperature increases potentially distorting molecules or making reactions hazardous, and difficulty controlling heat.
Chemical Composition and Thermal Behavior of Kraft LigninsMichal Jablonsky
Lignin has great potential for utilization as a green raw material or as an additive in various industrial applications, such as energy, valuable chemicals, or cost-effective materials. In this study, we assessed a commercial form of lignin isolated using LignoBoost technology (LB lignin) as well as three other types of lignin (two samples of non-wood lignins and one hardwood kraft lignin) isolated from the waste liquors produced during the pulping process. Measurements were taken for elemental analysis, methoxyl and ash content, higher heating values, thermogravimetric analysis, and molecular weight determination. We found that the elemental composition of the isolated lignins affected their thermal stability, activation energies, and higher heating values. The lignin samples examined showed varying amounts of functional groups, inorganic component compositions, and molecular weight distributions. Mean activation energies ranged from 93 to 281 kJ/mol. Lignins with bimodal molecular weight distribution were thermally decomposed in two stages, whereas the LB lignin showing a unimodal molecular weight distribution was decomposed in a single thermal stage. Based on its thermal properties, the LB lignin may find direct applications in biocomposites where a higher thermal resistance is required.
This document summarizes three papers related to biological conversion of lignocellulosic biomass. The first paper evaluates two red yeast species for their ability to assimilate sugars and aromatics from engineered Arabidopsis plants and successfully converts these products into biofuel precursors. The second paper identifies small drug resistance pumps in Bacillus bacteria that confer tolerance to ionic liquids used in biomass pretreatment and characterizes riboswitches that regulate these pumps. The third paper finds that engineered Pseudomonas putida produces more methyl ketones, a promising diesel blendstock, when grown on plant hydrolysates compared to sugars, due to plant-derived amino acids.
Catalysis | Biocatalysis |Phase transfer catalysis|ApplicationProttayDutta1
This document discusses catalysis and enzymes. It begins by defining a catalyst as a substance that increases the rate of a reaction without being consumed. It states that most enzymes are proteins that act as catalysts by accelerating reactions. Enzymes have advantages like efficiency, selectivity, and operating under mild conditions. They also have disadvantages like susceptibility to inhibition and limited operating ranges. The document discusses various topics related to enzymes and catalysis including immobilized enzymes, industrial applications, and phase transfer catalysis.
COMPARISON FREE ENERGY BINDING SITES NEURAMINIDASEijabjournal
Neuraminidase (NA) is the essential surface glycoprotein of the influenza virus. High- affinity neuraminidase inhibitors have been designed that interact only with the conserved active site and binding site residues. The neuraminidase (NA) of influenza virus is the target of anti – flu drug.for treatment of this
disease a thorough knowledge of neuraminidase protein is essential in order to produce potent drugs to suppress this enzyme..Drug design is by QSAR and docking methods, so we need a complete knowledge of receptor ligand, target site and binding site. This paper, using bioinformatics, Molecular Dynamics, Monte carlo and studied binding site NA enzyme in 310K temperature and different dielectrics (1, 78.39 and
32.63) for the best drug designing. We measured the potential energy of amino acids binding to the drug.Molecular Mechanics, Molecular Dynamic and Nanobiological have done a great assistance in drug designing.
This study investigated the indigoidine synthetase enzyme which contains an oxidase (Ox) domain involved in nonribosomal peptide synthesis. Through structural analysis of the Ox domain, a conserved tyrosine residue was identified that acts as an active site base. Multiple sequence alignment and biochemical assays on other Ox domains confirmed the general importance of this tyrosine residue. The findings provide mechanistic insight into how Ox domains catalyze oxidation reactions via an E2-like mechanism, utilizing the conserved tyrosine base. This work advances understanding of nonribosomal peptide synthesis which produces medically relevant natural products.
Physical and Structural Characterization of Biofield Treated Imidazole Deriva...albertdivis
The Aim of present study was to evaluate the impact of biofield treatment on two imidazole derivatives (i.e., imidazole and 2-methylimidazole) by various analytical methods.
This document discusses the use of microwaves for synthesis. It provides benefits of microwave synthesis such as faster reactions, less byproducts, and energy efficiency. Demerits include difficulty controlling heat and potential dangers from closed containers. Applications include pharmaceuticals, food processing, chemicals, polymers, and waste management. One example provided is a one-pot solvent-free microwave synthesis of fused pyrimidine diones and triones from barbituric acids, aldehydes, and carbamides/thiocarbamides. Microwave synthesis allows for greener chemistry by preventing waste and enabling inherently safer and more energy efficient reactions.
Affinity chromatography is a technique that separates biomolecules based on a biological interaction between the target biomolecule and an immobilized ligand. It involves coupling a specific ligand to a solid support matrix, then allowing the target biomolecule from a sample to bind reversibly to the ligand. Unbound molecules are washed away, while the bound target can then be eluted. Affinity chromatography is useful for purifying enzymes, antibodies, nucleic acids, and other biomolecules due to its high selectivity and ability to isolate molecules from complex mixtures in a single step.
This document discusses enzyme kinetics and catalytic mechanisms. It provides details on:
1. The catalytic triad of serine proteases (Ser195, His57, Asp102) and how inhibitors like DIPF can label the active site serine, disabling the enzyme.
2. The kinetic steps of enzyme-catalyzed reactions, including substrate binding, formation of a tetrahedral intermediate, and release of products.
3. How transition state theory is used to explain the kinetic barrier for reactions, and how enzymes lower this activation energy to greatly increase reaction rates.
4. How reaction rates depend on parameters like temperature, activation energy, and catalysts through equations derived from Arrhenius kinetics
Microwave and ultrasound for process intensification of biocatalysisCamilo Teixeira
This document discusses how microwave and ultrasound technologies can be used to intensify biocatalysis processes for bioethanol and biodiesel production. It explains that microwave and ultrasound heating can improve reaction rates and mass transfer, allowing reactions to be carried out faster and with less energy input than conventional heating methods. The document reviews how these technologies have been shown to enhance specific steps in biodiesel production, such as transesterification, as well as cellulose hydrolysis and fermentation steps in bioethanol production. It concludes that microwave and ultrasound technologies represent promising options for green process intensification that can reduce costs while increasing productivity and conversion yields for biofuel production.
The document describes a study that engineered the chemolithoautotrophic bacterium Thiobacillus denitrificans to enhance fatty acid production. A thioesterase gene from E. coli was integrated into the T. denitrificans chromosome under control of different promoters. This led to up to 52-fold higher fatty acid titers compared to the wild-type strain when the bacteria were grown anaerobically using reduced sulfur compounds, nitrate, and carbon dioxide. The results demonstrate the potential to engineer sulfur-oxidizing bacteria to produce renewable fuels from sulfide-containing waste streams.
Introduction
Classification
Therapeutic values of peptidomimetics
Design of peptidomimetics by manipulation of amino acids
Modification of peptide backbone
Chemistry of prostaglandins, leukotrienes and thromboxanes
The document summarizes recent research on new electro-optic properties of polysiloxane liquid crystal polymers. A series of polysiloxane-based side-chain liquid crystal polymers were prepared with systematic variation in spacer length between the mesogenic units and the polymer backbone. Electro-optic measurements showed that threshold voltage decreased with increasing spacer length. This was attributed to changes in intrinsic curvature elasticity rather than orientational order. Threshold voltage also decreased with increasing temperature and orientational order parameter. The results were consistent with existing models of curvature deformation in liquid crystals and provided insight into the effects of constraints from coupling mesogenic units to the polymer backbone.
This document summarizes recent developments in side chain liquid crystal polymers, focusing on polysiloxane based polymers. It discusses how a series of these polymers were prepared with systematic variation in the spacer length between the mesogenic units and the polymer backbone. Electro-optic measurements found that increasing the spacer length lowered the threshold voltage for molecular reorientation. A simple model indicates this is due to changes in intrinsic curvature elasticity rather than orientational order as the constraints from the polymer backbone are reduced with longer spacers.
CATALYSIS, TYPES OF CATALYSIS FOR CHEMISTRY STUDENTSShikha Popali
CATALYSIS IS A TYPE OF CHEMICAL REACTION. HERE IN THIS PREASENTATION THE CATALYSIS AND ITS TYPES ARE EXPLAINED IN DETAIL WITH ITS ADVANTAGES AND DISADVANTAGES.
Ijpar 14 617 manjusinghA label-free electrochemical protein sensor of perchlo...pharmaindexing
This document describes the development of a label-free electrochemical protein sensor using perchloric acid doped polyaniline (PANI-PA). PANI-PA films were fabricated on glass substrates using in situ polymerization. The sensor detects changes in surface potential when proteins interact with the charged PANI-PA film, allowing for label-free potentiometric protein detection. The sensor was tested for its ability to detect lysozyme, bovine serum albumin, and thaumatin proteins. PANI-PA was found to have high conductivity even at neutral pH values, making it suitable for protein sensing under physiological conditions. The sensor has potential for integration into implantable biosensing systems and for recognizing specific protein-protein
MERITS OF MICROWAVE ASSISTED REACTIONS
DEMERITS OF MICROWAVE ASSISTED REACTIONS
MECHANISM OF MICROWAVE HEATING
EFFECTS OF SOLVENTS IN MICROWAVE ASSISTED SYNTHESIS
MICROWAVE VERSUS CONVENTIONAL SYNTHESIS
MICROWAVE INSTRUMENTATION
VARIOUS TYPES OF MICROWAVE ASSISTED ORGANIC REACTIONS
APPLICATIONS OF MICROWAVE ASSISTED REACTIONS
This document summarizes research into optimizing the growth medium in a microbial fuel cell to maximize electricity production using Paenibacillus bacteria. Experiments tested different concentrations of glucose as the carbon source and found that 5g/L generated the highest voltage of 910mV. Testing over time found voltage increased with time, reaching a maximum of 750mV after 7 hours. Increasing the carbohydrate concentration initially increased voltage, but higher concentrations beyond 5g/L resulted in lower voltages. The research aims to utilize waste water from bread production as the substrate to generate electricity through bacterial conversion of sugars to protons, electrons, and carbon dioxide.
Water as a solvent in microwave assisted organic synthesisPrashantChavan93
Prashant Chavan
Reserach Scholar
M.S.(Pharm) in Medicinal Chemistry
National Institute of Pharmaceutical Education and Research Mohali, Punjab (India) 160062
mcm20_prashant@niper.ac.in
The document describes three studies related to biofuels and bioproducts:
1) A study characterized a novel lactam biosensor from Pseudomonas putida with unprecedented sensitivity for valerolactam and caprolactam. Through engineering, they developed biosensors with a wide dynamic range.
2) A study used quantum calculations and simulations to understand how Keggin-type polyoxometalate ionic liquids dissolve lignin. Calculations showed interactions between the ionic liquid and lignin model compound.
3) A study determined the mechanism of regioselectivity in an unusual bacterial acyl-CoA dehydrogenase, TcsD, which catalyzes terminal alkene formation. Struct
Microwave assisted reaction km komal wahane k3komalwahane
Microwave assisted organic reactions can occur using solvents, under solvent-free conditions on solid supports, or using neat reactants. Reactions see increased rates due to microwave dielectric heating causing molecular polarization and rotation, generating heat. Key advantages are rapid reactions, high purity products, improved yields, and wider usable temperature ranges. Challenges include sudden temperature increases potentially distorting molecules or making reactions hazardous, and difficulty controlling heat.
Chemical Composition and Thermal Behavior of Kraft LigninsMichal Jablonsky
Lignin has great potential for utilization as a green raw material or as an additive in various industrial applications, such as energy, valuable chemicals, or cost-effective materials. In this study, we assessed a commercial form of lignin isolated using LignoBoost technology (LB lignin) as well as three other types of lignin (two samples of non-wood lignins and one hardwood kraft lignin) isolated from the waste liquors produced during the pulping process. Measurements were taken for elemental analysis, methoxyl and ash content, higher heating values, thermogravimetric analysis, and molecular weight determination. We found that the elemental composition of the isolated lignins affected their thermal stability, activation energies, and higher heating values. The lignin samples examined showed varying amounts of functional groups, inorganic component compositions, and molecular weight distributions. Mean activation energies ranged from 93 to 281 kJ/mol. Lignins with bimodal molecular weight distribution were thermally decomposed in two stages, whereas the LB lignin showing a unimodal molecular weight distribution was decomposed in a single thermal stage. Based on its thermal properties, the LB lignin may find direct applications in biocomposites where a higher thermal resistance is required.
This document summarizes three papers related to biological conversion of lignocellulosic biomass. The first paper evaluates two red yeast species for their ability to assimilate sugars and aromatics from engineered Arabidopsis plants and successfully converts these products into biofuel precursors. The second paper identifies small drug resistance pumps in Bacillus bacteria that confer tolerance to ionic liquids used in biomass pretreatment and characterizes riboswitches that regulate these pumps. The third paper finds that engineered Pseudomonas putida produces more methyl ketones, a promising diesel blendstock, when grown on plant hydrolysates compared to sugars, due to plant-derived amino acids.
Catalysis | Biocatalysis |Phase transfer catalysis|ApplicationProttayDutta1
This document discusses catalysis and enzymes. It begins by defining a catalyst as a substance that increases the rate of a reaction without being consumed. It states that most enzymes are proteins that act as catalysts by accelerating reactions. Enzymes have advantages like efficiency, selectivity, and operating under mild conditions. They also have disadvantages like susceptibility to inhibition and limited operating ranges. The document discusses various topics related to enzymes and catalysis including immobilized enzymes, industrial applications, and phase transfer catalysis.
COMPARISON FREE ENERGY BINDING SITES NEURAMINIDASEijabjournal
Neuraminidase (NA) is the essential surface glycoprotein of the influenza virus. High- affinity neuraminidase inhibitors have been designed that interact only with the conserved active site and binding site residues. The neuraminidase (NA) of influenza virus is the target of anti – flu drug.for treatment of this
disease a thorough knowledge of neuraminidase protein is essential in order to produce potent drugs to suppress this enzyme..Drug design is by QSAR and docking methods, so we need a complete knowledge of receptor ligand, target site and binding site. This paper, using bioinformatics, Molecular Dynamics, Monte carlo and studied binding site NA enzyme in 310K temperature and different dielectrics (1, 78.39 and
32.63) for the best drug designing. We measured the potential energy of amino acids binding to the drug.Molecular Mechanics, Molecular Dynamic and Nanobiological have done a great assistance in drug designing.
This study investigated the indigoidine synthetase enzyme which contains an oxidase (Ox) domain involved in nonribosomal peptide synthesis. Through structural analysis of the Ox domain, a conserved tyrosine residue was identified that acts as an active site base. Multiple sequence alignment and biochemical assays on other Ox domains confirmed the general importance of this tyrosine residue. The findings provide mechanistic insight into how Ox domains catalyze oxidation reactions via an E2-like mechanism, utilizing the conserved tyrosine base. This work advances understanding of nonribosomal peptide synthesis which produces medically relevant natural products.
Physical and Structural Characterization of Biofield Treated Imidazole Deriva...albertdivis
The Aim of present study was to evaluate the impact of biofield treatment on two imidazole derivatives (i.e., imidazole and 2-methylimidazole) by various analytical methods.
This document discusses the use of microwaves for synthesis. It provides benefits of microwave synthesis such as faster reactions, less byproducts, and energy efficiency. Demerits include difficulty controlling heat and potential dangers from closed containers. Applications include pharmaceuticals, food processing, chemicals, polymers, and waste management. One example provided is a one-pot solvent-free microwave synthesis of fused pyrimidine diones and triones from barbituric acids, aldehydes, and carbamides/thiocarbamides. Microwave synthesis allows for greener chemistry by preventing waste and enabling inherently safer and more energy efficient reactions.
Affinity chromatography is a technique that separates biomolecules based on a biological interaction between the target biomolecule and an immobilized ligand. It involves coupling a specific ligand to a solid support matrix, then allowing the target biomolecule from a sample to bind reversibly to the ligand. Unbound molecules are washed away, while the bound target can then be eluted. Affinity chromatography is useful for purifying enzymes, antibodies, nucleic acids, and other biomolecules due to its high selectivity and ability to isolate molecules from complex mixtures in a single step.
This document discusses enzyme kinetics and catalytic mechanisms. It provides details on:
1. The catalytic triad of serine proteases (Ser195, His57, Asp102) and how inhibitors like DIPF can label the active site serine, disabling the enzyme.
2. The kinetic steps of enzyme-catalyzed reactions, including substrate binding, formation of a tetrahedral intermediate, and release of products.
3. How transition state theory is used to explain the kinetic barrier for reactions, and how enzymes lower this activation energy to greatly increase reaction rates.
4. How reaction rates depend on parameters like temperature, activation energy, and catalysts through equations derived from Arrhenius kinetics
Microwave and ultrasound for process intensification of biocatalysisCamilo Teixeira
This document discusses how microwave and ultrasound technologies can be used to intensify biocatalysis processes for bioethanol and biodiesel production. It explains that microwave and ultrasound heating can improve reaction rates and mass transfer, allowing reactions to be carried out faster and with less energy input than conventional heating methods. The document reviews how these technologies have been shown to enhance specific steps in biodiesel production, such as transesterification, as well as cellulose hydrolysis and fermentation steps in bioethanol production. It concludes that microwave and ultrasound technologies represent promising options for green process intensification that can reduce costs while increasing productivity and conversion yields for biofuel production.
The document describes a study that engineered the chemolithoautotrophic bacterium Thiobacillus denitrificans to enhance fatty acid production. A thioesterase gene from E. coli was integrated into the T. denitrificans chromosome under control of different promoters. This led to up to 52-fold higher fatty acid titers compared to the wild-type strain when the bacteria were grown anaerobically using reduced sulfur compounds, nitrate, and carbon dioxide. The results demonstrate the potential to engineer sulfur-oxidizing bacteria to produce renewable fuels from sulfide-containing waste streams.
Introduction
Classification
Therapeutic values of peptidomimetics
Design of peptidomimetics by manipulation of amino acids
Modification of peptide backbone
Chemistry of prostaglandins, leukotrienes and thromboxanes
The document summarizes recent research on new electro-optic properties of polysiloxane liquid crystal polymers. A series of polysiloxane-based side-chain liquid crystal polymers were prepared with systematic variation in spacer length between the mesogenic units and the polymer backbone. Electro-optic measurements showed that threshold voltage decreased with increasing spacer length. This was attributed to changes in intrinsic curvature elasticity rather than orientational order. Threshold voltage also decreased with increasing temperature and orientational order parameter. The results were consistent with existing models of curvature deformation in liquid crystals and provided insight into the effects of constraints from coupling mesogenic units to the polymer backbone.
This document summarizes recent developments in side chain liquid crystal polymers, focusing on polysiloxane based polymers. It discusses how a series of these polymers were prepared with systematic variation in the spacer length between the mesogenic units and the polymer backbone. Electro-optic measurements found that increasing the spacer length lowered the threshold voltage for molecular reorientation. A simple model indicates this is due to changes in intrinsic curvature elasticity rather than orientational order as the constraints from the polymer backbone are reduced with longer spacers.
A Novel Polymeric Prodrugs Synthesized by Mechanochemical Solid-State Copolym...inventionjournals
:We developed the novel polymeric prodrugs synthesized by mechanochemical solid-state copolymerization of glucose-based polysaccharides (dextran orglycogen) and the methacryloyloxy derivative of 5-fluorouracil (5-FU). The copolymerization proceededreadily and each polymeric prodrug was quantitatively obtained within8 h reaction. The number average molecular weight (Mn) and polydispersity (H) of the polymeric prodrug synthesized from dextran was 24,000 g/mol and 5.10, respectively. The number average particle diameter of the polymeric prodrug derived from glycogen was 14.9 nm. The hydrolysis profiles of the polymeric prodrug synthesized from dextranapparently followed the first-order kinetics, and 100% drug release was observed under the experimental condition used. The polymeric prodrug derived from glycogen also continued to release 5-FU at the first-order rate up to 5 h, followed by its rate constant decreased gradually. These results suggest that lower accessibility of water molecules for the synthetic polymer chains inside the glycogen particle might cause the gradual decrease of drug release rate.
JBEI Research Highlights - November 2018 Irina Silva
This document discusses recent advances in x-ray hydroxyl radical footprinting at the Advanced Light Source synchrotron. It compares dose response curves and mass spectrometry results from focused and unfocused white light sources. It also describes developing "drop-on-demand" methodologies to increase sample dose while maintaining microsecond exposure times, which enables high-dose experiments while minimizing sample volume. Preliminary experiments demonstrate this approach yields high quality data. The document contributes to improving synchrotron hydroxyl radical footprinting techniques for investigating protein and nucleic acid structures.
IRJET- Understanding the cDNA isolation and antimitogenic property in plant l...IRJET Journal
This document summarizes research on the isolation and characterization of cDNA from plant lectins and their anti-mitogenic properties. Key points include:
- Plant lectins are proteins found in many plants that bind carbohydrates and can agglutinate red blood cells. Their structure gives therapeutic and biotechnological potential.
- Researchers have isolated cDNA from various plants like Glechoma hederacea and Salvia stenophylla to study lectin genes and properties. Methods included RNA isolation, cDNA library construction, sequencing, and molecular modeling.
- Studies found that isolated lectins showed anti-mitogenic effects, inhibiting the growth and killing of some cancer cell lines, utilizing their carbohydrate-binding and toxic
This study investigates using electrocatalytic hydrogenation (ECH) to stabilize bio-oil produced from fast pyrolysis of biomass. ECH uses a Ru/ACC catalyst and voltaic cells to hydrogenate lignin model compounds like phenol, reducing their reactivity. Testing showed the catalyst could be reused after washing with methanol or DCM solvents. Future work will optimize the process and evaluate Nafion membrane efficiency and extraction methods to improve product yields from ECH of the lignin compounds. Overall, ECH is effective for stabilizing bio-oil and could provide an alternative fuel source through the deconstruction and upgrading of lignin and other biomass components.
Hydrogels are water-swollen polymer networks that can absorb large amounts of water. They have numerous pharmaceutical and biomedical applications due to their unique bulk and surface properties. Hydrogels can be designed to respond to environmental stimuli like pH, temperature, and ionic strength. This allows for controlled drug release in response to changes in the surrounding conditions. Hydrogels find use in various drug delivery applications like oral, ocular, and subcutaneous delivery due to their biocompatibility and ability to encapsulate and release bioactive compounds.
This document summarizes research on using electrospray synthesis and a thermally induced phase separation (TIPS) process to produce hierarchically structured poly(lactic-co-glycolic acid) (PLGA) microspheres for controlled drug release applications. The researchers used electrospraying to generate spherical, highly porous PLGA microspheres. They characterized the microspheres and showed that particle size, shape, and porosity could be controlled by varying electrospray processing parameters. The microspheres demonstrated long-term, sustained release of an active agent over one week with minimal degradation.
The document describes the synthesis and evaluation of nitromethane substituted chalcone derivatives for their antimicrobial and antitubercular activity. Chalcones were synthesized from substituted acetophenones and aldehydes under basic conditions. Michael adducts were obtained by reacting the chalcones with nitromethane under Michael addition reaction conditions. The structures of the compounds were characterized using NMR and IR spectroscopy. Docking studies were performed to study the binding interactions of the compounds with various Mycobacterium tuberculosis protein targets. The compounds were evaluated for their in vitro antitubercular, anthelmintic and antimicrobial activity. Some compounds showed good activity against Mycobacterium tuberculosis and against various microorgan
This document describes research into synthesizing and evaluating Michael adducts derived from chalcones for biological activity. Michael adducts were synthesized by reacting chalcones with nitromethane under basic conditions. Various chalcones were first synthesized by reacting substituted acetophenones with substituted aldehydes under basic conditions. The resulting Michael adducts underwent molecular docking studies against various Mycobacterium tuberculosis protein targets as well as evaluation for anti-tubercular, anthelmintic, and antimicrobial activity. Several of the synthesized compounds showed promising anti-tubercular activity at 50μg/ml and good anthelmintic activity, suggesting electron donating groups aid activity.
Impact of Gamma Irradiation on Structural and Dielectric Properties of CuI-PV...iosrjce
IOSR Journal of Applied Physics (IOSR-JAP) is a double blind peer reviewed International Journal that provides rapid publication (within a month) of articles in all areas of physics and its applications. The journal welcomes publications of high quality papers on theoretical developments and practical applications in applied physics. Original research papers, state-of-the-art reviews, and high quality technical notes are invited for publications.
This document describes a study on the preparation of oligoglucosamine by oxidative degradation of chitosan with hydrogen peroxide under microwave irradiation. The authors investigated the effects of various reaction parameters using an orthogonal test. They found that chitosan can be effectively degraded to oligoglucosamine with an average molecular weight of 900-1000 under optimal conditions of 15% H2O2 concentration and 4 minutes of microwave irradiation. The yield of oligoglucosamine depends strongly on the reaction time and H2O2 concentration.
This document provides an overview of electrophoresis techniques. It begins with an introduction to electrophoresis as the migration of charged particles under an electric field. It then discusses various factors that affect electrophoretic migration rates. The document goes on to explain different types of electrophoresis techniques including paper, gel, capillary electrophoresis and isoelectric focusing. It provides details on buffers, supporting media, staining techniques and applications of various electrophoresis methods. In over 3 pages, it comprehensively summarizes key concepts and techniques in electrophoresis.
This document provides information about electrophoresis techniques. It begins with an introduction to electrophoresis, noting that it involves the migration of charged particles under an applied electric field. It then discusses factors that affect migration rates, such as net charge, size, shape, electric field strength, medium properties, temperature, and buffer ionic strength.
The document goes on to describe various electrophoresis techniques in detail, including paper electrophoresis, gel electrophoresis using agarose or polyacrylamide gels, SDS-PAGE, isoelectric focusing, two-dimensional polyacrylamide gel electrophoresis, isotachophoresis, pulsed-field gel electrophoresis, immunoelectrophoresis, and capillary electrophoresis. It
Preparation of pyrimido[4,5 b][1,6]naphthyridin-4(1 h)-one derivativeselshimaa eid
This document describes the preparation of pyrimido[4,5-b][1,6]naphthyridin-4(1H)-one derivatives using a zeolite-nanogold catalyst. An efficient one-pot synthesis is developed involving the cyclocondensation of 6-amino-2-thioxo-2,3-dihydropyrimidin-4(1H)-one, aromatic aldehydes, and 1-benzylpiperidin-4-one in ethanol at 80°C. The nanogold catalyst is characterized and found to contain 4-6 nm gold nanoparticles dispersed on zeolite. Several derivatives are synthesized in good yields and characterized. Molecular dock
— Previous researches were made on UHMWPE (Ultra-High-Molecular-Weight-Polyethylene) based implant material and its fusion with Ca-alginate. New methods were made for preparing UHMWPE-Ca-alginate blends. If the coating Ca-alginate salt can be achieved on the surface of UHMWPE, it might lead to an implant material which could promote the bone formation. Earlier results show that we can make the coating layer on the polymer powder surface. Our new approach is to modify the method we made earlier, and this way the alginate layer can withstand washing and sterilization as it's shown in the paper. We also realized that the layer slowly can give off Ca2+ ions which can be absorbed with specific cells. Since we modified the surface structure of the UHMWPE samples we carried out wear testing of the new prepared samples. All of these measurements and experiments have been done as preparative ones to make one time real prosthetic material.
1. The document describes a new nanohybrid material composed of polyoxomolybdate, polypyrrole, and graphene oxide for use as a high-power symmetric supercapacitor electrode.
2. The nanohybrid was synthesized via a one-pot reaction where polyoxomolybdate acted as an oxidizing agent to polymerize pyrrole monomers onto graphene oxide nanosheets.
3. Structural and morphological analysis showed the nanohybrid had an excellent architecture with good interfacial contact between components, enabling fast redox reactions for high capacitive performance.
1) The document describes a novel method called INLIGHTTM for the relative quantification of N-linked glycans using isotopically labeled glycan hydrazide tags.
2) The method involves releasing N-linked glycans from glycoproteins using PNGase F, then derivatizing the glycans from two samples with either a light or heavy tagged reagent.
3) The tagged glycans are mixed, analyzed by LC/MS, and ratios of light and heavy glycan pairs are calculated to quantify differences between the two samples after correcting for isotopic overlap.
Similar to Crosslinked Microgels as Platform for Hydrolytic Catalysts Article pubs.acs.org/Biomac (20)
Biomimetic Glycoside Hydrolysis by a Microgel Templated with a Competitive Gl...aaaa zzzz
This document summarizes the synthesis and characterization of biomimetic microgel catalysts templated with a competitive glycosidase inhibitor (galactonoamidine). The microgels were synthesized via free radical polymerization in the presence of a binuclear copper complex and the inhibitor. Computational modeling was used to determine the inhibitor binds to the copper complex through its amidine and hydroxyl groups. The resulting microgels were characterized and found to have a narrow size distribution and near-quantitative incorporation of the copper complex. The microgels show potential as biomimetic catalysts for glycoside hydrolysis.
This document summarizes research on the synthesis of semi-fluorinated polymers via polycondensation of perfluoroalkenes (PFCAs) such as perfluorocyclopentene (PFCP) and perfluorocyclohexene (PFCH) with various bisphenols. Key findings include:
- PFCA monomers such as PFCP and PFCH were synthesized and reacted with bisphenols including biphenol, bisphenol A, and bisphenol-6F via polycondensation to obtain semi-fluorinated polymers.
- The polymers were characterized using NMR (1H, 19F, 13C), IR, TGA, DSC to determine structure, purity
- Babloo Sharma earned a Doctor of Philosophy degree in Chemistry in 2013 from [University name omitted] with a GPA of 4.0.
- He completed his PhD coursework and research under Professor Dennis W Smith, earning straight A's in several chemistry courses.
- Sharma maintained a GPA of 4.0 throughout his graduate studies from 2010 to 2013, and received his degrees in good academic standing.
1. The document discusses similarities between subatomic and astronomical levels, noting electrons orbiting nuclei like planets orbiting stars and spherical shapes at many scales.
2. It then notes Avogadro's constant of 6.022140857(74) ×1023 mol-1, which relates the number of entities at the macro and microscopic levels.
3. Based on the similarities observed and Avogadro's constant, the author postulates that there are exactly 6.022140857(74) ×1023 stars in the universe, equivalent to 1 mole of stars.
This book focuses on novel perflurocycloalkenyl (PFCA) aryl ether polymers, derived via polycondensation of perfluorocycloalkenes with bisphenols. Chapter 1 describes the detailed background of fluorine, its reactivity and effect in organic chemistry. This chapter also discusses the application of fluoropolymers with a detailed study of two fluoropolymers: perfluorocyclobutyl aryl ether polymers and fluorinated arylene vinylene ether polymers. Chapter 2, 3 and 4 describe the detailed synthesis, characterization and different properties of bis-PFCA aryl ether monomers, perfluorocyclopentenyl (PFCP) aryl ether polymers and perfluorocyclohexenyl (PFCH) aryl ether polymers, respectively. Chapter 3 also includes the potential crosslinking and post-functionalization studies of PFCA aryl ether polymers. Chapter 5 discusses the application section of these newly synthesized PFCA aryl ether polymers. Ultra low dielectric constant (k = 1.53) materials with self-cleansing properties were synthesized via incorporation of fluorodecyl-polyhedral oligomeric silsesquioxane (FD-POSS) into PFCP aryl ether polymers.
Sulfonated perfluorocyclopentenyl polymers and uses thereofaaaa zzzz
An aspect of the invention is directed to a polymer comprising a Sulfonated PerfluorocycIopentyl compound. Another aspect of the invention is directed to a sulfonated copolymer comprising one or more sulfonated polymers.A further aspect of the invention is directed to membranes prepared from the polymers of the claimed invention.
Ultra low dielectric constant (k 1⁄4 1.53) materials with self-cleansing properties were synthesized via incorporation of fluorodecyl-polyhedral oligomeric silsesquioxane (FD-POSS) into recently synthesized perfluorocyclopentenyl (PFCP) aryl ether polymers. Incorporation of fluorine rich, high free volume, and low surface energy POSS into a semifluorinated PFCP polymer matrix at various weight percentages resulted in a dramatic drop in dielectric constant, as well as a significant increase in hydrophobicity and oleophobicity of the system. These ultra-low dielectric self-cleansing materials (qtilt 1⁄4 38) were fabricated into electrospun mats from a solvent blend of fluorinated FD-POSS with PFCP polymers.
Bis-perfluorocycloalkenyl (PFCA) aryl ether monomers towards a versatile clas...aaaa zzzz
A unique class of perfluorocycloalkenyl (PFCA) aryl ether monomers was synthesized from commercially available perfluorocycloalkenes (PFCAs) and bisphenols in good yields. This facile one pot reaction of per- fluorocycloalkenes, namely, octafluorocyclopentene (OFCP), and decafluorocyclohexene (DFCH), with bisphenols occurs at room temperature via an addition–elimination reaction in the presence of a base. The synthesis of PFCA monomers and their condensation with bisphenols lead to perfluorocycloalkenyl (PFCA) aryl ether homopolymers and copolymers with random and/or alternating polymer architectures.
Published by Elsevier Ltd.
A variety of perfluorocycloalkenyl (PFCA) aryl ether monomers and polymers with enchained triarylamine units were successfully synthesized, characterized and reported here. These polymers are highly thermally stable and show variable thermal properties. Successful conver- sion of the newly synthesized TAA enchained perfluoro- cyclopentenyl (PFCP) aryl ether polymers via formylation and EAS demonstrates the synthetic versatility of TAA moiety and provides an excellent option for application specific post polymerization reactions. The cross-linking behavior of PFCP aryl ether polymers was studied under different reaction conditions. The combination of pro- cessability, thermal stabilities, and tailorability makes these polymers suitable for a wide variety of applications including electro-optics, proton exchange membranes and super-hydrophobic applications.
Perfluorocyclohexenyl Aryl Ether Polymers via Polycondensation of Decafluoroc...aaaa zzzz
ABSTRACT: A novel class of semifluorinated perfluorocyclohex- enyl (PFCH) aryl ether homo/copolymers was successfully synthesized with high yield through the step-growth polymer- ization of commercially available bisphenols and decafluorocy- clohexene in the presence of a triethylamine base. The synthesized polymers exhibit variable thermal properties depending on the functional spacer group (R). PFCH aryl ether copolymers with random and alternating architectures were also prepared from versatile bis-perfluorocyclohexenyl aryl ether monomers. The PFCH polymers show high thermal
stabilities with a 5% decomposition temperature ranging from 359 to 444 ﰀC in air and nitrogen atmosphere. These semifluori- nated PFCH aromatic ether polymers contain intact enchained PFCH olefin moieties, making further reactions such as cross- linking and application specific functionalization possible. VC 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2014, 52, 232–238
Perfluorocyclopentenyl (PFCP) Aryl Ether Polymers via Polycondensation of Oct...aaaa zzzz
ABSTRACT: A unique class of aromatic ether polymers
containing perfluorocyclopentenyl (PFCP) enchainment was
prepared from the simple step growth polycondensation of
commercial bisphenols and octafluorocyclopentene (OFCP)
in the presence of triethylamine. Model studies indicate that
the second addition/elimination on OFCP is fast and poly-
condensation results in linear homopolymers and copolymers
without side products. The synthesis of bis(heptafluoro-
cyclopentenyl) aryl ether monomers and their condensation
with bisphenols further led to PFCP copolymers with alternating structures. This new class of semifluorinated polymers exhibit surprisingly high crystallinity in some cases and excellent thermal stability.
The debris of the ‘last major merger’ is dynamically youngSérgio Sacani
The Milky Way’s (MW) inner stellar halo contains an [Fe/H]-rich component with highly eccentric orbits, often referred to as the
‘last major merger.’ Hypotheses for the origin of this component include Gaia-Sausage/Enceladus (GSE), where the progenitor
collided with the MW proto-disc 8–11 Gyr ago, and the Virgo Radial Merger (VRM), where the progenitor collided with the
MW disc within the last 3 Gyr. These two scenarios make different predictions about observable structure in local phase space,
because the morphology of debris depends on how long it has had to phase mix. The recently identified phase-space folds in Gaia
DR3 have positive caustic velocities, making them fundamentally different than the phase-mixed chevrons found in simulations
at late times. Roughly 20 per cent of the stars in the prograde local stellar halo are associated with the observed caustics. Based
on a simple phase-mixing model, the observed number of caustics are consistent with a merger that occurred 1–2 Gyr ago.
We also compare the observed phase-space distribution to FIRE-2 Latte simulations of GSE-like mergers, using a quantitative
measurement of phase mixing (2D causticality). The observed local phase-space distribution best matches the simulated data
1–2 Gyr after collision, and certainly not later than 3 Gyr. This is further evidence that the progenitor of the ‘last major merger’
did not collide with the MW proto-disc at early times, as is thought for the GSE, but instead collided with the MW disc within
the last few Gyr, consistent with the body of work surrounding the VRM.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
The binding of cosmological structures by massless topological defectsSérgio Sacani
Assuming spherical symmetry and weak field, it is shown that if one solves the Poisson equation or the Einstein field
equations sourced by a topological defect, i.e. a singularity of a very specific form, the result is a localized gravitational
field capable of driving flat rotation (i.e. Keplerian circular orbits at a constant speed for all radii) of test masses on a thin
spherical shell without any underlying mass. Moreover, a large-scale structure which exploits this solution by assembling
concentrically a number of such topological defects can establish a flat stellar or galactic rotation curve, and can also deflect
light in the same manner as an equipotential (isothermal) sphere. Thus, the need for dark matter or modified gravity theory is
mitigated, at least in part.
Or: Beyond linear.
Abstract: Equivariant neural networks are neural networks that incorporate symmetries. The nonlinear activation functions in these networks result in interesting nonlinear equivariant maps between simple representations, and motivate the key player of this talk: piecewise linear representation theory.
Disclaimer: No one is perfect, so please mind that there might be mistakes and typos.
dtubbenhauer@gmail.com
Corrected slides: dtubbenhauer.com/talks.html
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...Travis Hills MN
Travis Hills of Minnesota developed a method to convert waste into high-value dry fertilizer, significantly enriching soil quality. By providing farmers with a valuable resource derived from waste, Travis Hills helps enhance farm profitability while promoting environmental stewardship. Travis Hills' sustainable practices lead to cost savings and increased revenue for farmers by improving resource efficiency and reducing waste.
hematic appreciation test is a psychological assessment tool used to measure an individual's appreciation and understanding of specific themes or topics. This test helps to evaluate an individual's ability to connect different ideas and concepts within a given theme, as well as their overall comprehension and interpretation skills. The results of the test can provide valuable insights into an individual's cognitive abilities, creativity, and critical thinking skills
ANAMOLOUS SECONDARY GROWTH IN DICOT ROOTS.pptxRASHMI M G
Abnormal or anomalous secondary growth in plants. It defines secondary growth as an increase in plant girth due to vascular cambium or cork cambium. Anomalous secondary growth does not follow the normal pattern of a single vascular cambium producing xylem internally and phloem externally.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Unlocking the mysteries of reproduction: Exploring fecundity and gonadosomati...AbdullaAlAsif1
The pygmy halfbeak Dermogenys colletei, is known for its viviparous nature, this presents an intriguing case of relatively low fecundity, raising questions about potential compensatory reproductive strategies employed by this species. Our study delves into the examination of fecundity and the Gonadosomatic Index (GSI) in the Pygmy Halfbeak, D. colletei (Meisner, 2001), an intriguing viviparous fish indigenous to Sarawak, Borneo. We hypothesize that the Pygmy halfbeak, D. colletei, may exhibit unique reproductive adaptations to offset its low fecundity, thus enhancing its survival and fitness. To address this, we conducted a comprehensive study utilizing 28 mature female specimens of D. colletei, carefully measuring fecundity and GSI to shed light on the reproductive adaptations of this species. Our findings reveal that D. colletei indeed exhibits low fecundity, with a mean of 16.76 ± 2.01, and a mean GSI of 12.83 ± 1.27, providing crucial insights into the reproductive mechanisms at play in this species. These results underscore the existence of unique reproductive strategies in D. colletei, enabling its adaptation and persistence in Borneo's diverse aquatic ecosystems, and call for further ecological research to elucidate these mechanisms. This study lends to a better understanding of viviparous fish in Borneo and contributes to the broader field of aquatic ecology, enhancing our knowledge of species adaptations to unique ecological challenges.
The use of Nauplii and metanauplii artemia in aquaculture (brine shrimp).pptxMAGOTI ERNEST
Although Artemia has been known to man for centuries, its use as a food for the culture of larval organisms apparently began only in the 1930s, when several investigators found that it made an excellent food for newly hatched fish larvae (Litvinenko et al., 2023). As aquaculture developed in the 1960s and ‘70s, the use of Artemia also became more widespread, due both to its convenience and to its nutritional value for larval organisms (Arenas-Pardo et al., 2024). The fact that Artemia dormant cysts can be stored for long periods in cans, and then used as an off-the-shelf food requiring only 24 h of incubation makes them the most convenient, least labor-intensive, live food available for aquaculture (Sorgeloos & Roubach, 2021). The nutritional value of Artemia, especially for marine organisms, is not constant, but varies both geographically and temporally. During the last decade, however, both the causes of Artemia nutritional variability and methods to improve poorquality Artemia have been identified (Loufi et al., 2024).
Brine shrimp (Artemia spp.) are used in marine aquaculture worldwide. Annually, more than 2,000 metric tons of dry cysts are used for cultivation of fish, crustacean, and shellfish larva. Brine shrimp are important to aquaculture because newly hatched brine shrimp nauplii (larvae) provide a food source for many fish fry (Mozanzadeh et al., 2021). Culture and harvesting of brine shrimp eggs represents another aspect of the aquaculture industry. Nauplii and metanauplii of Artemia, commonly known as brine shrimp, play a crucial role in aquaculture due to their nutritional value and suitability as live feed for many aquatic species, particularly in larval stages (Sorgeloos & Roubach, 2021).
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
2. itself as an ideal strategy for the synthesis of such catalytic
entity. Contrary to thermally initiated free radical polymer-
ization, UV-initiated polymerizations can be performed under
the desired conditions avoiding enlarged vibrational energy.23,24
Additional advantages include shortened polymerization times,
a limited number of side reactions including chain-transfer
reactions,25
and polymer growth with spatial and temporal
resolutions.26,27
Microgels derived from photoinitiated poly-
merization are known and provide a diverse array of high-end
biomedical applications including drug delivery,28,29
wound
healing,30
tissue engineering,31
and immobilization of heat-
sensitive substrates, enzymes, and other catalysts.14,32,33
Unfortunately, the photoinitiated polymerization of an
equimolar mixture of BA and styrene using our previously
developed strategy was obstructed at ambient temperature and
found negligible at 0 °C. Similar observations were reported by
others when using styrene, BA, or mixtures thereof for free-
radical polymerizations at temperatures below 70 °C.34,35
Gravimetric analyses of sample aliquots disclosed that even the
use of a powerful high-pressure Hg lamp as a light source and
concentrations of various photoinitiators of up to 20 mol %
remained futile (data not shown). To advance polyacrylate
microgels as a general platform and support of catalysts with
tailored matrix effects, we thus introduce here a new
polymerization protocol that is applicable to photoinitiated
free-radical polymerization at ambient temperature or below
using a crosslinking monomer (Scheme 1).
Miniemulsions were derived by ultrasheering of solutions
containing BA (3), ethylene glycol dimethacrylate (EGDMA;
5), and VBbpdpo ligand (1) or styrene (4) followed by
photoinitiated free radical polymerization at ambient temper-
ature or below. The obtained particles were characterized for
their hydrodynamic diameter, turbidity, composition, morphol-
ogy, and thermal stability using dynamic light scattering (DLS),
UV/vis, IR and EDX spectroscopy, transmission electron
microscopy (TEM) imaging, and thermogravimetric analysis.
We also obtained preliminary data to correlate the crosslinking
content of the microgels to their catalytic ability using the
hydrolysis of 4-methylumbelliferyl β-D-galactopyranoside (6) as
a model reaction. The study is part of our long-term objective
to synthesize efficient biomimetic catalysts. Corresponding
results of our ongoing efforts are summarized below.
2. MATERIALS AND METHODS
2.1. Instrumentation. Images of microgels were acquired using a
JEM 1011 (JEOL) Transmission Electron Microscope at 100 kV
equipped with AMI Image Capture Engine software, version 602.
Thermal stability data were obtained using a thermogravimetric
analyzer TGA Q50 (TA Instruments) version V20.13 build 39.
Energy-dispersive X-ray spectroscopy (EDX) was performed using a
Nova NanoLab system (FEI) consisting of a dual-beam workstation
with a FEG Scanning Electron Microscope and a focused ion beam.
The system is fitted with an in-lens SE and BSE detector, and a Bruker
Xflash 5010 detector. IR spectra were acquired using an ATR-FTIR
8000 spectrophotometer (Shimadzu) equipped with LabSolutions IR
software, version 2.15. Elemental analyses were obtained from Atlantic
Microlab, Atlanta, GA. DLS of microgel dispersions was observed
using a DynaPro-99E photometer (Protein Solutions/Wyatt Technol-
ogy) equipped with a DynaPro Diode Laser at 825.1 nm, a
temperature controlled microsampler (Protein Solutions) and
Dynamics V6 software (Protein Solutions) for data recording and
analysis. UV/vis spectra of microgel dispersions were obtained on a
Cary 50 UV/vis spectrometer (Varian) equipped with WinUV
Analysis Suite software, version 3.0. Glycoside hydrolyses were
observed on a FilterMax F5Multi-Mode Microplate Reader (Molecular
Devices) equipped with SoftMax Pro 6 software version 6.3. MALDI
mass spectrometry data were obtained in the state-wide mass
spectrometry facility at the University of Arkansas on an Ultraflex II
MALDI-TOF mass spectrometer with an upper weight limit of 80
kDa. A Digital Sonifier (Branson) with flat cap was used for
ultrasonication. A UV medium-pressure lamp TQ 150 (Heraeus
Noblelight) with a current of 2.0 A, a voltage of 90 V, a radiation flux
Φ of 47 W between 200 and 600 nm, and an outer diameter of 13.50
mm was used for free radical polymerization. Polymer aliquots were
dried by lyophilization using a FreeZone 1 L benchtop freeze-dry
system (Labconco) or by air-drying using an IKA Dry Block Heater
(VWR). A Barnstead E-Pure ultrapure water purification system
(ThermoScientific) was used to obtain nanopure water at a resistance
of 18.2 MΩ.
2.2. Reagents and Materials. Styrene (4), sodium dodecyl sulfate
(SDS), and 4-methylumbelliferone (7) were purchased from TCI
America; EGDMA (5) from Alfa Aesar; BA (3) and neutral aluminum
oxide from Acros Organics; decane, N-cyclohexyl-3-aminopropane-
sulfonic acid (CAPS), 2,2′-dimethoxy-2-phenylacetophenone, copper-
(II) acetate monohydrate, sodium hydroxide, pyrocatechol, and D-
galactose from Sigma-Aldrich; and 4-methylumbelliferyl β-D-galacto-
pyranoside (6) from Carbosynth US. All monomers were purified by
filtration over alumina immediately prior to use. All other chemicals
were used as received. The polymerizable ligand N,N′-bis((3-(4-
vinylbenzyloxy)-2-pyridylmethyl)-1,3-diaminopropan-2-ol (VBbpdpo,
1),20
and the low molecular weight complex Cu2bpdpo (2),36
were
synthesized as described.
Scheme 1. Strategy for a Facile One-Pot Synthesis of Crosslinked Microgels and Catalyst Activation
Biomacromolecules Article
DOI: 10.1021/acs.biomac.8b00019
Biomacromolecules 2018, 19, 1164−1174
1165
3. All pH values were measured after three-point calibration using a Φ
250 pH meter (Beckman) equipped with a refillable combination pH
electrode (ROSS Orion). The electrode had a 165 mm long epoxy
body and a 95 mm long semimicro tip with a diameter of 8 mm.
Spectra/Por membranes (Spectrum Laboratories) with a molecular
weight cutoff (MWCO) of 15000 were used for dialysis. The
membranes were soaked in nanopure water for at least 30 min prior to
use. Bottle-top filters (Nalgene) with 500 mL volume, 0.22 μm pore
size, and poly(ether sulfone) (PES) membrane were used for filtration
of aqueous buffer and SDS solutions. Formvar-coated Cu grids (Ted
Pella) Type-A at 300 mesh with an approximate grid hole size of 63
μm were used for TEM imaging. A two-sided Hellma QS semimicro
quartz cuvette with a 10 mm path length and 1400 μL volume was
used for UV/vis studies. Disposable cuvettes (BrandTech) with four
optically clear sides and a 10 mm light path were used for DLS
experiments. Clear bottom 96-well black polystyrene microplates
(Greiner Bio-One) were used for fluorescence assays. Heat-resistant
polyester films (VWR) were used as 96-well plate adhesives.
2.3. Synthesis of Microgels. 2.3.1. Solutions of Aqueous Buffers
and Other Reagents for Microgel Synthesis. CAPS/SDS Buffer.
Typically, 0.221 g (1.00 mmol) of CAPS was dissolved in nanopure
water. The resulting solution was titrated with aqueous sodium
hydroxide solution to pH 10.08 at 23 °C and adjusted to a volume of
200 mL translating into a buffer solution with a pH of 10.50 at 0 °C.
Then, SDS (3.0000 g, 10.403 mmol) was dissolved in a portion of this
CAPS buffer solution to yield 200.00 g of an aqueous SDS/CAPS
buffer solution that is approximately 5 mM in CAPS and 52 mM in
SDS. The buffer solution was stored at ambient temperature until use.
Galactose Stock Solution. Typically, 0.3147 g (1.747 mmol) of
galactose were dissolved in 5 mL of nanopure water. The 350 mM
stock solution was kept at ambient temperature and used in 250 μL
aliquots.
Ethylene Glycol Stock Solution. Typically, 0.1118 g (1.801 mmol)
of ethylene glycol were dissolved in 5 mL of nanopure water. The 360
mM stock solution was kept at ambient temperature and used in 250
μL aliquots.
Copper(II) Acetate Stock Solution. Typically, 0.1747 g (875.0
μmol) of copper(II) acetate were dissolved in 5 mL of nanopure water.
The 175 mM stock solution was kept at ambient temperature and used
in 100 μL aliquots.
Initiator Stock Solution. Typically, 0.2189 g (854.1 μmol) of 2,2′-
dimethoxy-2-acetophenone were dissolved in 900 μL of methanol
immediately prior to use. A 200 μL aliquot of this stock solution was
used to initiate the polymerization and any remainder of the solution
was discarded.
Pyrocatechol Solution. Typically, 0.0839 g (0.7620 mmol) of
pyrocatechol were dissolved in 2 mL of nanopure water. The resulting
stock solution was used in 10 μL aliquots.
Sonication of Solutions. Ultrasheering of prepolymerization
emulsions was achieved by sonication at 0 °C using an amplitude of
40% over 2 min in pulse mode (5 s on and 2 s off).
2.3.2. General Procedure for the Preparation of Microgels
Containing Styrene. Monomer Composition. All polymers contain
a combined monomer amount of 1.75 mmol and differ in the
respective EGDMA and BA amounts corresponding to 5, 10, 25, 40,
50, 60, and 80 mol % of crosslinker; that is, EGDMA (0.087−1.400
mmol) and BA (1.663−0.350 mmol). The styrene amount was kept
constant at 1 mol % of the overall monomer content, that is, 0.0175
mmol.
UV-Initiated Free Radical Polymerization. In a typical experiment,
the respective monomer mixture was added to 9.6 g of CAPS/SDS
buffer solution at ambient temperature and stirred after addition of 80
mg of decane, 250 μL of the galactose stock solution, and 100 μL of
the copper acetate stock solution. After 5 h, the prepolymerization
mixture was cooled in an ice bath and sonicated in the cold. The
resulting miniemulsion was treated with 200 μL of the initiator
solution in the cold and immediately placed under UV light. All
reaction mixtures were stirred and kept in an ice-bath to ensure a
temperature of 3 °C or below during the polymerization over 90 min.
Additionally, microgels were prepared in a similar fashion using 250
μL of the ethylene glycol stock solution in place of the galactose stock
solution and used for control experiments.
Gravimetric Analysis. To follow the proceedings of the polymer-
ization reaction, 100 μL aliquots of the reaction mixture were taken
after 2, 5, 10, 20, 30, 45, 60, 75, and 90 min and treated with 10 μL of
the pyrocatechol stock solution. The resulting aliquots were air-dried
at 60 °C for at least 48 h prior to gravimetric analysis. The progress of
the reaction (P) was calculated using eq 1
= + × ×P m m m m m[%] /( ) / 100solid m surfactant all aliquot (1)
where msolid is the mass of remaining solid obtained after drying
corrected for the weight of galactose and buffer solution, mm is the
mass of the combined monomer weights, mall is the mass of reaction
mixture, and maliquot is the mass of each aliquot taken.
Likewise, polymers from miniemulsions in 2.4, 3.6, 4.8, and 7.2 g of
SDS/CAPS buffer were prepared using the same procedure. Each
polymerization was carried out in duplicate and the reported values are
averages of at least two independent data sets. Control polymers were
prepared in absence of Cu(II) acetate and galactose in a similar
fashion.
2.3.3. General Procedure for the Preparation of Microgels
Containing VBbpdpo Ligand. VBbpdpo Ligand Stock Solution.
Typically, 0.1352 g (252.1 μmol) of VBbpdpo (1) were dissolved in
3.1664 g of DMSO, and the resulting solution was used in 0.1146 g
portions that correspond to 8.75 μmol of ligand.
Monomer Mixtures. All polymers contain a combined monomer
amount of 1.75 mmol and differ in the respective EGDMA and BA
amounts as specified above. Instead of styrene, a suitable increment of
the ligand stock solution was added to each polymerization mixture to
keep the ligand amount constant at 0.05 mol % of the overall
monomer content, that is, 8.75 μmol.
UV-Initiated Free Radical Polymerization. The prepolymerization
mixtures were treated as described for microgels containing styrene,
but exposed to UV light for 60 min only.
2.4. Characterization of Microgels in Solution. Sample
Preparation. All samples were dialyzed and diluted with filtered 52
mM aqueous SDS solution in volumetric flasks. Typically, a 1000 μL
aliquot of the synthesized microgel dispersion was dialyzed against 20
mL SDS solution for 10 h in 2 h intervals 5× each. A 200 μL aliquot of
the purified microgel dispersions was then diluted 1250-fold by serial
dilution of corresponding aliquots for DLS experiments and 250-fold
for UV/vis experiments.
Dynamic Light Scattering. The scattered light was detected at a
90° angle to the incident beam at 20 ± 1 °C. The fluctuation of the
measured scattering intensity was transformed into the hydrodynamic
diameter of the samples using the method of cumulants for a
monomodal system, as implemented in the Dynamics V6 software.37,38
The mean hydrodynamic diameter Dh and the polymer dispersity D
were derived as an average of 10 scans with 10 acquisitions over 10 s
each. The obtained mean hydrodynamic diameter Dh was then plotted
against the crosslinking content of the respective microgel.
UV/Vis Spectroscopy. The absorbance of the microgel samples was
recorded between 300 and 800 nm at 37.0 ± 0.1 °C. The resulting
data are given as an accumulated average of 3 scans and corrected for
the absorbance of the buffer solution.
2.5. Characterization of Microgels in the Solid State. Sample
Preparation. Typically, a 1000 μL aliquot of the synthesized microgel
dispersion was dialyzed against 40 mL of 0.2 mM disodium
ethylenediamine tetraacetate (EDTANa2) solution (5× each) and 40
mL of nanopure water (5× each) for a total of 10 h in 2 h intervals.
The dialyzed solutions of the microgels were freeze-dried for 36 h, and
the resulting solid was used for further analysis unless stated otherwise.
IR Spectroscopy. Absorbance spectra were acquired in % trans-
mittance mode using freeze-dried microgels at ambient temperature
between 500 and 4000 cm−1
with a resolution of 2 cm−1
. The data are
given as an average of three accumulated scans.
Energy-Dispersive X-ray Spectroscopy (EDX). All experiments were
performed at 15 kV accelerating voltage. Freeze-dried microgel
samples were fixed on the specimen holder using double-sided carbon
tape and sputtered with gold to increase conductivity.
Biomacromolecules Article
DOI: 10.1021/acs.biomac.8b00019
Biomacromolecules 2018, 19, 1164−1174
1166
4. Thermogravimetric Analysis (TGA). The thermal stability of freeze-
dried microgels was determined by heating of samples from 20 to 800
°C at a rate of 10 °C/min in a nitrogen atmosphere with a flow rate of
20 mL/min. The polymers were equilibrated at 70 °C for 60 min.
Elemental Analysis. The composition of polymers derived from 5,
25, 40, 60, and 80 mol % EGDMA prepared in the presence of
galactose or ethylene glycol was determined by combustion analysis;
Anal. Calcd for L
Pgal (5% EGDMA): C, 65.38; H, 9.23; N, 0.21.
Found: C, 65.27; H, 9.08; N, 0.23; L
Pgal (25% EGDMA): C, 64.07; H,
8.63, N, 0.19. Found: C, 63.85; H, 8.48; N, 0.13; Anal. Calcd for L
Pgal
(40% EGDMA): C, 63.24; H, 8.25; N, 0.18. Found: C, 62.97; H, 8.12;
N, 0.13; Anal. Calcd for L
Pgal (60% EGDMA): C, 62.28; H, 7.81; N,
0.16. Found: C, 62.22; H, 7.70; N, 0.14, Anal. Calcd for L
Pgal (80%
EGDMA): C, 61.47; H, 7.45; N, 0.15. Found: C, 60.75; H, 7.31; N,
0.20; Anal. Calcd for L
PEG (60% EGDMA): C, 62.28; H, 7.81; N, 0.16;
Found: C, 61.35; H, 7.72; N, 0.14.
2.6. Chemical Stability of Microgels in Solution. Sample and
Buffer Preparation. Typically, 200 mL of 50 mM aqueous buffer
solutions were prepared by standard procedures at ambient temper-
ature. Then, SDS (3.0000 g, 10.403 mmol) was dissolved in a portion
of this buffer solution to yield 200.00 g of an aqueous SDS/buffer
solution that is approximately 50 mM in buffering agent and 52 mM in
SDS. The aqueous buffer solution was stored at ambient temperature
until use; For pH 1, a 0.1 M aqueous hydrochloride solution was used;
at pH 3, formate; pH 5, acetate; pH 7, 4-(2-hydroxyethyl)-1-
piperazineethanesulfonic acid; pH 9, [tris(hydroxymethyl)-
methylamino]-propanesulfonic acid; pH 11, CAPS; and at pH 13, a
0.1 M aqueous sodium hydroxide solution.
Stability Assay. Typically, 200 μL aliquots of the aqueous microgel
dispersions with 5, 25, 40, 60, and 80 mol % of crosslinking EGDMA
were diluted into 10 mL with aqueous SDS solution. A 1000 μL
aliquot of the resulting solutions each was then dialyzed against 70 mL
of the respective aqueous buffer solution over 24 h in 4, 10, and 10 h
intervals, followed by dialysis against 70 mL of aqueous SDS solution
for an additional 12 h. The purified microgels were diluted into 5 mL
solutions with aqueous SDS solution. Prior to analysis, 1000 μL
aliquots of these microgel dispersions were further diluted with 2000
μL of aqueous SDS solution, yielding an overall 750-fold dilution of
the original samples. Aliquots of the diluted microgel samples were
then analyzed by DLS assays, as described above (see section 2.4)
2.7. Microgel Imaging via Transmission Electron Micros-
copy. SDS Stock Solution. Typically, 6.00 g (20.8 mmol) of SDS were
dissolved in 1000 mL of nanopure water, yielding a 20 mM aqueous
SDS solution. Aliquots of the solution were used for dialysis and
dilution of microgel dispersions as described.
Styrene-Containing Polymers. In a typical procedure, 500 μL of
the polymer solution were diluted with 500 μL of SDS solution. The
resulting solution was sonicated for 10 min at 40% amplitude in pulse
mode (5 s on, 5 s off) under cooling in an ice bath using a tapered
microtip and then dialyzed against 60 mL of the same aqueous SDS
stock solution six times in 2 h time intervals each. One drop of the
resulting solution was put on a Cu grid, air-dried at ambient
temperature for 48 h prior, and used for imaging without any further
preparation.
Ligand-Containing Polymers. In a typical procedure, 500 μL of the
polymer solution were dialyzed in 2 h time intervals 5 times each, and
diluted with 500 μL SDS stock solution. One drop of the resulting
solution was put a Cu grid, air-dried at ambient temperature for 48 h
prior and used for imaging without any further preparation.
TEM Imaging. Images of the dried microgel samples were obtained
at 100 kV using 25000- to 200000-fold magnification.
2.8. Evaluation of Microgels as Catalysts. General Remarks. A
50 mM aqueous CAPS buffer solution corresponding to pH 10.50 at
37 °C was prepared using standard procedures and stored at ambient
temperature until use. All experiments were performed in a 96-well
plate format at 37.0 ± 0.1 °C. All microgel dispersions are purified by
dialysis, and the catalysts are activated by appropriate amounts of
aqueous copper(II) acetate solutions as needed.
2.8.1. Microgel Preparation for Kinetic Evaluation. EDTANa2/SDS
Solution for Dialysis. In a typical experiment, 8.25 mg (22.2 μmol)
EDTANa2 and 1.50 g (5.20 mmol) of SDS were dissolved in 100 mL
of nanopure water. The resulting solution was used in 20 mL aliquots.
EDTANa2 Solution for Dialysis. In a typical experiment, 0.0762 g
(0.205 mmol) of EDTANa2 were dissolved in 1000 mL of nanopure
water and used in 200 mL aliquots.
SDS Solution for Dialysis. In a typical experiment, 3.00 g (10.4
mmol) of SDS were dissolved in 100 mL of nanopure water. The
resulting solution was used in 20 mL aliquots.
CAPS/SDS Solution for Dialysis. In a typical experiment, 200 mL of
a 50 mM CAPS buffer solution was prepared by standard procedures
at ambient temperature at pH 10.63. Then, 3.00 g (10.4 mmol) of SDS
were dissolved in the buffer and the overall weight of the resulting
solution was kept at 200.00g. The resulting solution was used in 20 mL
aliquots.
Microgel Dialysis Prior to Elemental Analysis. In a typical
experiment, a 1000 μL aliquot of five different microgel dispersions
were purified by dialysis against 200 mL of aqueous EDTANa2
solution and 200 mL of water in 2 h intervals 5× each. The purified
microgel dispersions were freeze-dried, and their resulting weight was
recorded. The immobilized ligand content was then calculated from
the overall N-content of the sample, as determined by elemental
analysis.19,20
Microgel Dialysis Prior to Kinetic Evaluation. In a typical
experiment, 500 μL of a microgel dispersion were purified by dialysis
using a sequence of aqueous EDTA/SDS, SDS, and CAPS/SDS
solutions in 2 h intervals 5× each. The purified microgel dispersion
was diluted with CAPS/SDS buffer solution to about 4.5 mL and
followed by catalyst activation.
Catalyst Activation. A 25−40 μL aliquot of an aqueous copper(II)
acetate stock solution (18.46 mg in 5 mL of water) was added to the
microgel dispersion purified by dialysis. The volumes of the aliquots
reflect the metal ion content calculated for complete saturation of the
immobilized ligand for each individual microgel. The resulting
microgel dispersions were further diluted with aqueous CAPS/SDS
solution to 5 mL of overall solution and stored at ambient temperature
prior to use. All solutions were used within 7 days or discarded. For
control experiments, a metal-ion free, nonactivated polymer L
Pgal was
prepared in a similar fashion; however, the addition of aqueous
copper(II) acetate solution was substituted by corresponding amounts
of buffer solution.
2.8.2. Apparent Extinction Coefficients εapp. Stock Solution of 4-
Methylumbelliferone (7). In a typical experiment, 6.38 mg (36.2
μmol) of 4-methylumbelliferone (7) were dissolved in 500 μL of
DMSO and diluted into 5 mL with aqueous buffer solution. By serial
dilution, a 0.3 μM stock solution of 7 was prepared immediately prior
to use. Three independent stock solutions were made this way.
Assay. A selected constant aliquot of the activated microgel
dispersion (0, 10, 15, 20, 25, 30, 35, or 40 μL) was added to aliquots
(0−160 μL) of the stock solution of 7, followed by addition of
aqueous buffer solution to keep the nominal volume of the resulting
solutions at 200 μL. The resulting solutions were prepared in triplicate
from the independent stock solutions of 7 and equilibrated at 37 °C
for 30 min. The fluorescence of 7 was read at λex = 360 nm and λem =
465 nm.
Data Analysis. The fluorescence was plotted over the molar
substrate concentration. The apparent extinction coefficients εapp were
then determined from the slope of the linear fit of the plotted data and
given as an average of three independent experiments for each catalyst
solution at a specified volume.
2.8.3. Determination of a Suitable Catalyst Concentration
Range. Substrate Stock Solution. Typically, 10.34 mg (30.58 μmol)
of 4-methylumbelliferyl β-D-galactopyranoside (6) were dissolved in
1000 μL of DMSO and diluted to 10 mL with 50 mM aqueous CAPS
buffer solution, yielding a 3.4 mM substrate stock solution. As the
glycoside precipitates at ambient temperature over time, the resulting
solution was kept above 50 °C and prepared immediately prior to use.
Stock Solution of Catalyst Cu2bpdpo (2). Typically, 5.91 mg (9.00
μmol) of Cu2bpdpo (2) was dissolved in 5 mL of buffer solution.
Then, a 500 μL aliquot was further diluted into 10 mL, yielding a
Biomacromolecules Article
DOI: 10.1021/acs.biomac.8b00019
Biomacromolecules 2018, 19, 1164−1174
1167
5. catalyst stock solution that was stored at ambient temperature until
use.
Stock Solution of Microgel Catalysts. Typically, the activated
microgel dispersions were prepared as described above and used
without any further modification.
Assay. In a 96-well plate, 0−40 μL aliquots of the respective catalyst
stock solutions were added in to a constant 100 μL aliquot of the
substrate stock solution followed by corresponding aliquots of the
buffer solution to keep the nominal total volume at 200 μL in each
well. The substrate hydrolysis was followed at 37 °C by monitoring the
formation of 4-methylumbelliferone (7) using fluorescence spectros-
copy (λex = 360 nm; λem = 465 nm) over 8 h. All experiments were
performed in triplicate.
Data Analysis. The collected fluorescence data were plotted over
time, and a linear fit was applied to the data collected between 140 and
480 min. The calculated rates of the reaction were then corrected by
the corresponding apparent extinction coefficient and catalyst amount,
averaged from at least two independent experiments and plotted over
the catalyst concentration. A linear fit was applied to the linear range of
the data to visualize the concentration range, in which the catalyst
concentration depends linearly on the reaction rate; for microgel
Cu2L
Pgal: a = 4.3 × 10−10
; b = 3.2 × 10−9
; R2
= 0.999; 6 at 3.4 mM;
catalyst concentration range: 0−7 μM; for Cu2bpdpo (2): y = a + bx, a
= 4.5 × 10−10
, b = 5.4 × 10−9
, R2
= 0.998; 6 at 3.1 mM; catalyst
concentration range: 0−12 μM.
2.8.4. Catalytic Glycoside Hydrolysis. CAPS Buffer Solution for
Catalysis. In a typical experiment, 100 mL of a 50 mM CAPS buffer
solution were prepared by standard procedures at ambient temper-
ature, accounting for temperature differences for the intended use at
pH 10.50 and 37 °C.
Substrate Stock Solution. Typically, 5.68 mg (16.8 μmol) of 4-
methylumbelliferyl β-D-galactopyranoside (6) were dissolved in 500
μL of DMSO and diluted to 5 mL with 50 mM aqueous CAPS buffer
solution, yielding a 3.4 mM substrate stock solution. As the glycoside
precipitates in this concentration from aqueous solutions at ambient
temperature, the resulting solution was kept above 50 °C until use.
Catalyst Stock Solutions. The microgel dispersions were used as
described above. The stock solutions of Cu2bpdpo (2) were prepared
by dissolving 5.53 mg (8.42 μmol) in 5 mL of 50 mM CAPS buffer
solution.
Kinetic Assay. In a typical experiment, 20 μL of an activated
microgel dispersion were added to aliquots of the glycoside stock
solution (0−100 μL) and corresponding amounts of buffer solution,
keeping the nominal volume of the resulting solutions at 200 μL. The
hydrolysis of 6 was monitored over 8 h by following the formation of
4-methylumbelliferone (7; λex = 360 nm; λem = 465 nm). The product
formation was read in 20 min intervals after orbital shaking of the
solutions over 5 s each. All experiments were performed in duplicate or
triplicate.
Data Analysis. The collected fluorescence intensity was plotted
over time, and a linear fit applied to the data collected between 140
and 480 min. The calculated rates of the reaction were then corrected
by the corresponding apparent extinction coefficient and catalyst
amount, averaged from two independent experiments, and plotted
over the molar substrate concentration. Nonlinear regression of the
resulting hyperbolic data yielded the rate constant kcat and the
apparent substrate affinity KM.
The rate constant of the uncatalyzed reaction knon was determined
by applying a linear fit to the corrected rates of the collected data
obtained in absence of catalyst. Data obtained in the presence of
metal-ion free control polymer L
Pgal and from control polymer Cu2L
PEG
were treated likewise to estimate their catalytic efficiency.
3. RESULTS AND DISCUSSION
3.1. Protocol Development for Polymerization of
Mini-Emulsions at Low Temperature. For the development
of a protocol suitable for the immobilization of pentadentate
ligand VBbpdpo (1) at ambient temperature or below, mixtures
of ligand 1, BA (3), EGDMA (5), and decane were stirred in
CAPS/SDS buffer for 4−5 h (Chart 1).
Miniemulsions thereof were then prepared by ultrasheering
of the resulting solution. Decane was used as a hydrophobe to
suppress the thermodynamic instability of the resulting
miniemulsions caused by Ostwald ripening and coalescence.10
Addition of 2,2-dimethoxy-2-phenylacetophenone (8) in
methanol initiated the free radical polymerization under UV
light at ambient temperature.39
As VBbpdpo 1 requires a
multistep synthesis and labor-intensive purifications,20
equi-
molar amounts of styrene (4) were used for the optimization of
the polymerization protocol in early stages of this study.
Styrene is commercially available and represents the polymer-
izable end groups of the VBbpdpo ligand (1). Gravimetric
analyses of reaction aliquots were used to follow the
proceedings of the polymerization reaction and demonstrated
satisfactory conversion of BA (1.75−0 mmol) in the presence
of EGDMA (0−1.75 mmol), and styrene (≤2 mol %) using 5
mol % photoinitiator in 5 mM SDS/CAPS buffer at pH 10.50
and ambient temperature (Figure 1).
However, when repeating the reaction under ice-cooling,
incomplete monomer conversion for miniemulsions with low
EDGMA content (≤50 mol %) and extended reaction times to
reach maximal monomer conversion were noted (Figure 2a).
We consequently increased the concentration of the photo-
Chart 1. Structures of the VBbpdpo Ligand and Other
Reagents for Assay Development
Figure 1. Progress of the photoinitiated free radical polymerization of
mini-emulsions containing 0 (yellow square), 0.25 (red circle), 0.50
(red triangle), 0.75 (purple down-pointing triangle), 1.00 (blue tilted
square), 1.25 (black left-pointing triangle), 1.50 (blue right-pointing
triangle), and 1.75 (purple hexagon) mmol of EGDMA; correspond-
ing amounts of BA, in the presence of 2 mol % styrene and 5 mol %
photoinitiator in 5 mM aqueous CAPS buffer solution at pH 10.50 and
ambient temperature (20−22 °C).
Biomacromolecules Article
DOI: 10.1021/acs.biomac.8b00019
Biomacromolecules 2018, 19, 1164−1174
1168
6. initiator from 5 to 10 mol % for all subsequent experiments.
While the polymerization then levels out at around 80%
monomer conversion for microgels derived from EGDMA at
28 or 42 mol %, the use of 14 mol % of crosslinking agent
remains insufficient and still leads to incomplete monomer
conversions (Figure 2b).
The polymerization conditions were then further optimized
for each EGDMA concentration by an increase in the amount
of SDS/CAPS buffer solution from the previously used 4.8 g to
9.6 g per reaction, thereby increasing the ratio of surfactant to
monomer. The number of particles and their size, as well as the
degree and rate of polymerization are directly dependent on the
concentration of the surfactant.40,41
Employing the outlined
adjustments, the monomer conversion reaches over 93% at
about 60 min for any crosslinking content of the
miniemulsions. As a representative example, the monomer
conversions for miniemulsions derived from 60 mol % EGDMA
at different dilutions are depicted (Figure 3). The optimized
dilution conditions were consequently used as a standard for
any subsequent microgel preparation. In addition, the reaction
time of the microgel synthesis is substantially shortened from
previous 180 to less than 75 min.42
As the preparation of microgels via free radical polymer-
ization may be hampered in the presence of paramagnetic
Cu(II) ions, a previously developed masking protocol using
excess of coordinating anions was additionally employed.19
As
expected, the monomer conversion was not notably influenced
by Cu(II) ions in the presence of deprotonated galactose in
alkaline solution and equals the polymerization proceedings in
absence of metal ions (Figure 4a).
The developed protocol shows also comparable polymer-
ization proceedings for the synthesis of microgels S
P and L
P
with equal crosslinking content after exchange of 4 by molar
equivalents of ligand 1 (Figure 4b). With a successful
polymerization protocol on hand, a series of microgels
containing polymerizable ligand VBbpdpo (1)19
at crosslinking
amounts between 5 and 80 mol % was prepared, their physical
properties characterized and catalytic activity established. All
styrene-containing microgels S
P were prepared likewise, but
contain the molar equivalent of 4 instead of 1.19
All polymers
were prepared in the presence of Cu(II) ions and excess
galactose. For control experiments, polymers using ethylene
glycol instead of galactose were synthesized under otherwise
identical conditions.
3.2. Microgel Characterization in Solution. Gravimetric
analyses of both polymer series L
P and S
P with crosslinking
content between 5 and 80 mol % disclosed similar monomer
conversion during the polymerization reaction over time (see
above). However, the resulting particles may still differ in their
mean hydrodynamic diameter, polydispersity, and apparent
turbidity, which all influence their intended use as catalysts.
Consequently, all microgels were initially characterized in
solution using DLS and UV−vis spectroscopy. Attempts to
analyze the microgels by gel permeation chromatography were
futile due to their high crosslinking content (≥5%), as already
noted by others.43,44
3.2.1. Microgel Characterization via Dynamic Light
Scattering. The synthesized microgels were purified by dialysis
prior to analysis using DLS. The mean hydrodynamic diameter
(Dh) and the sample dispersity (D) were obtained after dilution
of dialyzed microgels with aqueous SDS solution in order to
eliminate concentration-dependent scattering effects.45
All
ligand- and styrene-containing polymers show mean hydro-
dynamic diameters between 200 and 285 nm that are
comparable at the same crosslinking content (Figure 5).
The substitution of ligand 1 by 4 during optimization of
polymerization procedures in the early stages of the project is
thus unlikely to have altered the composition, size, or swelling
behavior of the resulting microgels. The dispersity of the
microgels is narrow and ranges from 0.10 to 0.18.
Ligand-containing microgels with a crosslinking content at 5
mol % display a mean hydrodynamic diameter of 210 ± 10 nm,
Figure 2. Progress of the photoinitiated free radical polymerization
using (a) 5 mol % and (b) 10 mol % of photoinitiator to convert
miniemulsions derived from monomer mixtures containing 14 mol %
(black square), 28 mol % (red circle), and 42 mol % (green triangle)
of EGDMA; corresponding amounts of BA and 2 mol % of styrene in
5 mM aqueous CAPS buffer solution at pH 10.50 and 0 °C.
Figure 3. Monomer conversion over time at 0 °C for mini-emulsions
derived from 60 mol % EGDMA, 40 mol % BA and 1 mol % styrene in
(a) 4.8 g (green circle), (b) 7.2 g (yellow triangle), (c) 9.6 g (red tilted
square), and (d) 12.0 g (wine red down-pointing triangle) of SDS/
CAPS buffer solution.
Figure 4. Monomer conversion over time in 9.6 g of SDS/CAPS
buffer solution at pH 10.50 and 0 °C for miniemulsions derived from
(a) 60 mol % EGDMA, 40 mol % BA and 1 mol % styrene in presence
(blue circle) and absence (black circle) of Cu(II) ions and galactose;
and (b) 50 mol% EGDMA, 50 mol% BA and VBbpdpo (1) (pink
pentagon, 0.5 mol %) or styrene (4) (blue pentagon, 1 mol%).
Biomacromolecules Article
DOI: 10.1021/acs.biomac.8b00019
Biomacromolecules 2018, 19, 1164−1174
1169
7. which is smaller than the corresponding value for polymers
with 25% (245 ± 5 nm) or 80% crosslinking content (280 ± 2
nm). The particle size increases as a consequence of the
increased crosslinking content of the matrix, as observed by
others in related microgel systems.46,47
At the same time, the
increased matrix rigidity reduces their swelling capacity,47
which
decreases the hydrodynamic diameter and rivals the particle
enlargement caused by a higher crosslinking content. As a result
of these competing phenomena, the microgels at 25 mol %
crosslinking content are on average 15 nm larger than a
microgel prepared at 40% crosslinking content and 35 nm
larger than a microgel synthesized at 5 mol % of crosslinking
EGDMA.
To assess the chemical stability, aliquots of styrene-
containing microgels with different crosslinking content were
exposed to aqueous SDS/buffer solutions between pH 1 and 13
for 24 h each. The mean hydrodynamic diameter of the
microgels remained constant for a given crosslinking content
over the selected pH range (see Supporting Information). Our
observations imply particle stability for a wide range of catalytic
conditions that will be further explored in future efforts. Related
microgels were previously reported with comparable stability
against particle hydrolysis by others.48
3.2.2. Microgel Characterization via UV/Vis Spectroscopy.
Any turbidity of solutions derived from crosslinked microgels
may hamper their later spectroscopic evaluation as catalysts
when using UV/vis spectroscopy. Consequently, the absorb-
ance of the dispersed microgels was determined between 300
and 800 nm relative to the aqueous SDS solution used as a
solvent (Figure 6).
Solutions of ligand-containing microgels and their styrene
counterparts show near identical absorbance spectra in the
selected wavelength range (data not shown) that increase
relative to the crosslinking content of the dispersed particles.
Similar observations were noted for related crosslinked
microgels by others previously.46,49,50
The results imply that
the extinction coefficient for each solution containing microgel
has to be determined to account for turbidity effects when
using microgels as catalysts (see below).
3.3. Characterization of Microgels in the Solid State. The
composition and morphology of the dispersed particles forming
the microgels were characterized by IR and EDX spectroscopy
and MALDI mass spectrometry. The thermal stability of the
polymers was determined by thermal gravimetric analysis (see
Supporting Information), and the particle morphology was
visualized by tunneling electron microscopy. Toward this end,
the microgels were dialyzed against nanopure water to remove
all traces of buffer and emulsifier and freeze-dried. Elemental
analysis data confirmed incorporation of the VBbpdpo ligand
with near quantitative yield based on analysis of the N-content,
as described on different occasions before.19,20,42
Attempts to further characterize the N-content of microgels
derived from VBbpdpo by EDX spectroscopy failed, indicating
a N-content below the detection limit (i.e., ≤1 wt %). Attempts
to identify the ligand incorporation by NMR spectroscopy were
found futile for related microgels previously and were thus not
repeated here.42
Analysis of samples by MALDI mass
spectrometry indicated molar masses of the crosslinked
microgels above 100 kDa that could not be further specified
due to experimental limitations of the method.
3.3.1. Particle Imaging. The morphology of the microgels in
the solid state was visualized by tunneling electron microscopy.
In the presence of emulsifier in a concentration used for
material preparation, only blurry images with high background
scattering were obtained. In the absence of emulsifier, particle
agglomeration or precipitation was observed. A modified
dialysis protocol to include SDS in reduced amounts eventually
allowed imaging of samples with a crosslinking content of 60
mol % (Figure 7).
Popcorn-like particles with a mean diameter of ∼250 nm and
visible deformation were detected. This particle deformation is
ascribed to a high local crosslinking density and the resulting
nonuniform swelling of the microgels during the nucleation
step as already noted by others.51
As our microgels are
synthesized for an intended use as homogeneous catalysts in
aqueous solution, characterization of the particle size by DLS in
water appears more appropriate than TEM imaging in the dry
Figure 5. Mean hydrodynamic diameters (Dh) of microgels derived
from ligand VBbpdpo (magenta) and styrene (blue) with crosslinking
content between 5 and 80 mol %; T = 20 °C.
Figure 6. Absorbance of dispersed microgels in aqueous SDS solution
containing 5 mol % (orange), 40 mol % (red), and 60 mol % (olive) of
EGDMA.
Figure 7. TEM images of freeze-dried microgel samples with 60 mol %
crosslinking content derived from (a) VBbpdpo ligand (1) and (b)
styrene (4).
Biomacromolecules Article
DOI: 10.1021/acs.biomac.8b00019
Biomacromolecules 2018, 19, 1164−1174
1170
8. state. Further attempts to image other microgels in the solid
state were thus not made. However, the mean diameters of the
imaged microgels at 60% crosslinking are only slightly smaller
than their mean hydrodynamic diameter in aqueous solution as
determined via DLS analysis (see above). This observation
underscores again the reduced particle swelling ability of
microgels with high crosslinking content in aqueous solution as
discussed above and noted by others previously.47
3.4. Evaluation of Crosslinked Microgels As Catalysts
for the Hydrolysis of Glycosidic Bonds. The synthesized
microgels were prepared for catalysis by applying modified
protocols for purification by dialysis and metal ion reloading
that were originally developed for noncrosslinked microgel
systems.19,20,42
In short, aliquots of the aqueous microgel
dispersions were dialyzed against aqueous EDTA solution to
remove Cu(II) ions, excess galactose, and any nonpolymerized
monomer, followed by dialysis against water and aqueous
alkaline CAPS buffer solution to prepare for metal ion
reloading. In contrast to previous protocols, all dialysis
solutions contained SDS emulsifier at a concentration
equivalent to that used during microgel synthesis to prevent
particle agglomeration or precipitation.
The catalyst in the dialyzed microgels was then activated by
the addition of appropriate aliquots of aqueous Cu(II) acetate
solutions. The respective metal ion amount was correlated to
the content of immobilized ligand, assuming near quantitative
complex formation and based on the overall N-content, as
determined by elemental analysis (see above). Corresponding
procedures were described in detail for related, noncrosslinked
systems and result in near quantitative catalyst activation, as
monitored by isothermal titration calorimetry and EPR
spectroscopy.19,20
The turbidity of the aqueous microgel dispersions under
consideration here increases visibly to the naked eye with the
crosslinking content from 5 to 80 mol % EGDMA. As a
consequence, the apparent extinction coefficient (εapp) was
determined for each microgel under the respective assay
conditions prior to analysis of related spectroscopic data. The
cleavage of the glycosidic bond of 4-methylumbelliferyl β-D-
galactopyranoside (6) was then monitored by fluorescence
readouts (λex = 360 nm; λem = 465 nm) to follow the formation
of 4-methylumbelliferone (7) in aqueous CAPS/SDS buffer at
pH 10.50 and 37 °C (Scheme 2).52
The alkaline conditions
were selected to match previous investigations of glycoside
hydrolyses with low molecular complexes21
and used here to
establish catalytic activity of the newly synthesized crosslinked
microgels. The assay was developed in a 96-well plate format to
allow fast catalyst screening under various reaction conditions,
including lower pH values in future efforts.
Prior to in-depth kinetic evaluation of the microgels as
catalysts, the dependence of the glycoside hydrolysis on the
catalyst concentration was determined. Along these lines, a
microgel dispersion with 60 mol % crosslinking content was
used in overall ligand concentrations between 0 and 15 μM to
hydrolyze a constant 3.4 mM aqueous solution of glycoside 6 in
50 mM CAPS buffer at pH 10.50 and 37 °C. A microgel
concentration up to 7 μM correlates linearly to the product
formation, validating the subsequent analysis of kinetic data in
this concentration range by the Michaelis−Menten model
(Figure 8).
Likewise, a linear correlation between the concentration of
the low molecular weight complex Cu2bpdpo (2) and the
product formation of the glycoside hydrolysis was observed
when the catalyst was used in concentrations up to 12 μM
under assay conditions.
With a fast screening assay on hand, the hydrolysis of
glycoside 6 was evaluated with two different microgel catalysts
at 60% crosslinking content: a polymer Cu2L
Pgal prepared in the
presence of galactose and its metal-free, nonactivated analogue
L
Pgal. Control experiments were conducted using a microgel
Cu2L
PEG that has the same crosslinking content as those
polymers above, but is prepared in the presence of ethylene
glycol instead of galactose. Additionally, hydrolysis of 6 was
followed in the presence of low molecular weight complex
Cu2bpdpo (2) and in the absence of catalyst in the buffer
solution itself. The resulting hyperbolic data for the glycoside
hydrolyses were analyzed by applying the Michaelis−Menten
model to obtain the rate of the reaction (kcat), the substrate
affinity (KM), and the rate of the uncatalyzed reaction (knon) in
aqueous buffer solution. The catalytic proficiency (kcat/(KM ×
knon), catalytic efficiency (kcat/KM), and acceleration of the
Scheme 2. Model Reaction to Monitor the Catalytic Hydrolysis of Glycosidic Bonds
Figure 8. Linear range of catalytic activity for the hydrolysis of a
constant amount of 6 in the presence of increasing concentration of
catalysts Cu2L
Pgal (pink pentagon) and Cu2bpdpo (2) (blue triangle);
SDS/CAPS buffer solution at pH 10.50 and 37 °C.
Biomacromolecules Article
DOI: 10.1021/acs.biomac.8b00019
Biomacromolecules 2018, 19, 1164−1174
1171
9. reaction over the uncatalyzed background reaction (kcat/knon)
were then calculated therefrom as described (Table 1, Figure
9).19,20
For the metal ion-free, nonactivated control polymer L
Pgal,
only a linear fit could be applied to the data to derive an
approximation of the catalytic efficiency. The control polymer
Cu2L
PEG behaves likewise. The hydrolysis of the glycoside 6 is
38-fold faster when catalyzed by Cu2L
Pgal (Table 1, entry 1) in
comparison to low molecular weight complex 2, and 2.5-fold
faster when compared to metal-free microgel L
Pgal. In turn, the
catalytic proficiency of a metal-free microgel L
Pgal toward the
hydrolysis of 6 is 1 order of magnitude higher than the catalytic
proficiency of the low molecular weight complex Cu2bpdpo (2)
(Table 1, entries 3 and 4). Thus, the influence of the matrix of
the microgel is most significant for the overall catalyst
performance during hydrolysis of 6.
By contrast, the choice of the counterion during microgel
preparation (i.e., galactose vs ethylene glycol) has a comparably
minor effect on the overall catalyst performance resulting in a
1.6-fold higher catalytic proficiency of Cu2L
Pgal over Cu2L
PEG
under otherwise identical conditions (Table 2, entries 1 and 2).
A variation of the crosslinking content in the microgel matrix
between 5 and 80 mol % discloses the highest catalytic
proficiency for the hydrolysis of glycoside 6 by microgels with
40 mol % EGDMA (Figure 10). We hypothesize that the active
sites of the microgels with enhanced crosslinking content are
not freely accessible to the substrate. This finding further
highlights the contributions of the matrix to the overall catalytic
performance of the otherwise identical microgels.53
The kinetic study establishes a high catalytic proficiency of
water-soluble microgels that rivals those of corresponding
glycoside-transforming catalytic antibodies54
and outperforms
the catalytic activity of its low molecular weight analog 2. Most
notably, the microgel matrix contributes significantly to the
overall catalytic performance and will be subject to
modifications in future efforts.
3.5. CONCLUSION
A new polymerization procedure was developed for the
synthesis of microgels from BA and EGDMA with a
crosslinking content between 5 and 80 mol % at ambient
temperature or below. Near quantitative immobilization of a
pentadentate ligand as catalyst precursor was achieved. The
microgels were characterized using DLS, TEM, TGA, elemental
analysis, EDX, and MALDI, UV/vis, and IR spectroscopies.
The mean hydrodynamic diameters of the resulting microgels
were between 210 and 280 nm in aqueous solution. The study
disclosed competing phenomena with increasing crosslinking
content encompassing particle enlargement and reduced
swelling capacity in dependence of matrix rigidity. Sufficient
thermal stability of the microgels below 100 °C and high
chemical stability between pH 1 and 13 were also recognized,
indicating a large range of operation for the synthesized
microgels during catalysis.
Lastly, the catalytic activity of the microgels was demon-
strated using the hydrolysis of 4-methylumbelliferyl β-D-
galactopyranoside (6) as a model reaction. The reaction is
more than 5 orders of magnitude, or 220000-fold, faster in the
presence of catalyst Cu2L
Pgal than the uncatalyzed reaction. The
same catalyst accelerates the reaction 38-fold over its low
molecular weight analog Cu2bpdpo (2) and 1.6-fold over metal-
ion free control polymers, indicating a large contribution of the
matrix to the overall observed proficiency of the catalyst. A
comparison of the catalytic activity of microgels synthesized
with 5 to 80 mol % of crosslinking EGDMA reveals differences
in their catalytic turnover ability depending on the rigidity of
the matrix. A bell-shape correlation between catalyst proficiency
and crosslinking content was observed that peaks at 40 mol %.
Further evaluation of matrix effects are thus the subject of
ongoing investigations and will be reported in due course.
Table 1. Kinetic Parameters for the Catalytic Hydrolysis of 4-Methylumbelliferyl-β-D-galactopyranoside (6)a
entry catalyst kcat × 10−6
(min−1
) KM (mM) kcat/KM (min−1
M−1
) kcat/knon (M) kcat/(knon × KM)
1 Cu2L
Pgal 360 ± 80 5.68 ± 1.44 0.0634 1250 220000
2 Cu2L
PEG 0.0394 137000
3 L
Pgal 0.0254 88000
4 Cu2bpdpo (2) 7.2 ± 2.0 4.27 ± 1.50 0.0017 25 5800
a
pH 10.50 in aqueous 50 mM CAPS buffer solution at 37 °C; knon(6) = 2.88 × 10−7
min−1
M−1
.
Figure 9. Proficiency of selected catalysts for the hydrolysis of 6 in
aqueous 50 mM CAPS buffer at pH 10.50 and 37 °C.
Figure 10. Proficiency of microgel Cu2L
Pgal catalysts with a crosslinking
content between 5 and 80 mol % of EGDMA for the hydrolysis of 6 in
aqueous 50 mM CAPS buffer at pH 10.50 and 37 °C.
Biomacromolecules Article
DOI: 10.1021/acs.biomac.8b00019
Biomacromolecules 2018, 19, 1164−1174
1172
10. ■ ASSOCIATED CONTENT
*S Supporting Information
The Supporting Information is available free of charge on the
ACS Publications website at DOI: 10.1021/acs.bio-
mac.8b00019.
IR spectra, TGA data, and chemical stability studies of
selected microgels (PDF).
■ AUTHOR INFORMATION
Corresponding Author
*E-mail: susanne.striegler@uark.edu. Phone: +1-479-575-5079.
Fax: +1-479-575-4049.
ORCID
Babloo Sharma: 0000-0002-0265-322X
Susanne Striegler: 0000-0002-2233-3784
Author Contributions
The manuscript was written through contributions of all
authors. All authors have given approval to the final version of
the manuscript.
Funding
Support of this research to S.S. from the National Science
Foundation (CHE-1305543) and the Arkansas Biosciences
Institute is gratefully acknowledged.
Notes
The authors declare no competing financial interest.
■ ACKNOWLEDGMENTS
The authors thank Joshua Sakon for access to his DLS
instrumentation, Suranga Rajapaksha for TGA analyses, and
Betty Martin for assistance during TEM and EDX experiments.
■ REFERENCES
(1) Jager, M.; Minnaard, A. J. Regioselective Modification of
Unprotected Glycosides. Chem. Commun. 2016, 52 (4), 656−664.
(2) Henrissat, B.; Davies, G. Structural and Sequence-based
Classification of Glycoside Hydrolases. Curr. Opin. Struct. Biol. 1997,
7 (5), 637−644.
(3) Koeller, K. M.; Wong, C.-H. Complex Carbohydrate Synthesis
Tools for Glycobiologists: Enzyme-based Approach and Program-
mable One-pot Strategies. Glycobiology 2000, 10 (11), 1157−1169.
(4) Šmejkalová, D.; Piccolo, A. Enhanced Molecular Dimension of a
Humic Acid Induced by Photooxidation Catalyzed by Biomimetic
Metalporphyrins. Biomacromolecules 2005, 6 (4), 2120−2125.
(5) Wulff, G.; Liu, J. Design of Biomimetic Catalysts by Molecular
Imprinting in Synthetic Polymers: The Role of Transition State
Stabilization. Acc. Chem. Res. 2012, 45 (2), 239−247.
(6) Collman, J. P.; Fudickar, W.; Shiryaeva, I. Water-Soluble
Polymer-Bound Biomimetic Analogues of Cytochrome c Oxidase
Catalyze 4e- Reduction of O2 to Water. Inorg. Chem. 2003, 42 (11),
3384−3386.
(7) Wulff, G. Enzyme-like Catalysis by Molecularly Imprinted
Polymers. Chem. Rev. 2002, 102 (1), 1−28.
(8) Sanson, N.; Rieger, J. Synthesis of Nanogels/Microgels by
Conventional and Controlled Radical Crosslinking Copolymerization.
Polym. Chem. 2010, 1 (7), 965−977.
(9) Thorne, J. B.; Vine, G. J.; Snowden, M. J. Microgel Applications
and Commercial Considerations. Colloid Polym. Sci. 2011, 289 (5),
625.
(10) Antonietti, M.; Landfester, K. Polyreactions in Miniemulsions.
Prog. Polym. Sci. 2002, 27 (4), 689−757.
(11) Yu, L.; Ding, J. Injectable Hydrogels as Unique Biomedical
Materials. Chem. Soc. Rev. 2008, 37 (8), 1473−1481.
(12) Van Vlierberghe, S.; Dubruel, P.; Schacht, E. Biopolymer-Based
Hydrogels As Scaffolds for Tissue Engineering Applications: A Review.
Biomacromolecules 2011, 12 (5), 1387−1408.
(13) Ghobril, C.; Rodriguez, E. K.; Nazarian, A.; Grinstaff, M. W.
Recent Advances in Dendritic Macromonomers for Hydrogel
Formation and Their Medical Applications. Biomacromolecules 2016,
17 (4), 1235−1252.
(14) Nguyen, K. T.; West, J. L. Photopolymerizable Hydrogels for
Tissue Engineering Applications. Biomaterials 2002, 23 (22), 4307−
4314.
(15) Vermonden, T.; Censi, R.; Hennink, W. E. Hydrogels for
Protein Delivery. Chem. Rev. 2012, 112 (5), 2853−2888.
(16) Buwalda, S. J.; Vermonden, T.; Hennink, W. E. Hydrogels for
Therapeutic Delivery: Current Developments and Future Directions.
Biomacromolecules 2017, 18 (2), 316−330.
(17) Zhang, Q. M.; Wang, W.; Su, Y.-Q.; Hensen, E. J. M.; Serpe, M.
J. Biological Imaging and Sensing with Multiresponsive Microgels.
Chem. Mater. 2016, 28 (1), 259−265.
(18) Plamper, F. A.; Richtering, W. Functional Microgels and
Microgel Systems. Acc. Chem. Res. 2017, 50 (2), 131−140.
(19) Striegler, S.; Barnett, J. D.; Dunaway, N. A. Glycoside
Hydrolysis with Sugar-Templated Microgel Catalysts. ACS Catal.
2012, 2 (1), 50−55.
(20) Striegler, S.; Dittel, M.; Kanso, R.; Alonso, N. A.; Duin, E. C.
Hydrolysis of Glycosides with Microgel Catalysts. Inorg. Chem. 2011,
50 (18), 8869−8878.
(21) Striegler, S.; Dunaway, N. A.; Gichinga, M. G.; Barnett, J. D.;
Nelson, A.-G. D. Evaluating Binuclear Copper(II) Complexes for
Glycoside Hydrolysis. Inorg. Chem. 2010, 49 (6), 2639−2648.
(22) Kuo, P. L.; Turro, N. J.; Tseng, C. M.; El-Aasser, M. S.;
Vanderhoff, J. W. Photoinitiated Polymerization of Styrene in
Microemulsions. Macromolecules 1987, 20 (6), 1216−1221.
(23) Andrzejewska, E. Recent Advances in Photo-Induced Free-
Radical Polymerization. MOJPS 2017, 1 (2), na.
(24) Bernabé-Zafón, V.; Cantó-Mirapeix, A.; Simó-Alfonso, E. F.;
Ramis-Ramos, G.; Herrero-Martínez, J. M. Comparison of Thermal-
and Photo-Polymerization of Lauryl Methacrylate Monolithic
Columns for CEC. Electrophoresis 2009, 30 (11), 1929−1936.
(25) Yagci, Y.; Jockusch, S.; Turro, N. J. Photoinitiated Polymer-
ization: Advances, Challenges, and Opportunities. Macromolecules
2010, 43 (15), 6245−6260.
(26) Haines, L. A.; Rajagopal, K.; Ozbas, B.; Salick, D. A.; Pochan, D.
J.; Schneider, J. P. Light-Activated Hydrogel Formation via the
Triggered Folding and Self-Assembly of a Designed Peptide. J. Am.
Chem. Soc. 2005, 127 (48), 17025−17029.
(27) Bowman, C. N.; Kloxin, C. J. Toward an Enhanced
Understanding and Implementation of Photopolymerization Reac-
tions. AIChE J. 2008, 54 (11), 2775−2795.
(28) An, Y.; Hubbell, J. A. Intraarterial Protein Delivery Via Intimally-
Adherent Bilayer Hydrogels. J. Controlled Release 2000, 64 (1), 205−
215.
(29) Oh, J. K.; Drumright, R.; Siegwart, D. J.; Matyjaszewski, K. The
Development of Microgels/Nanogels for Drug Delivery Applications.
Prog. Polym. Sci. 2008, 33 (4), 448−477.
(30) Pereira, R. F.; Barrias, C. C.; Granja, P. L.; Bartolo, P. J.
Advanced Biofabrication Strategies for Skin Regeneration and Repair.
Nanomedicine 2013, 8 (4), 603−621.
(31) Jiang, Y.; Chen, J.; Deng, C.; Suuronen, E. J.; Zhong, Z. Click
Hydrogels, Microgels and Nanogels: Emerging Platforms for Drug
Delivery and Tissue Engineering. Biomaterials 2014, 35 (18), 4969−
4985.
(32) O’Shannessy, D. J.; Ekberg, B.; Mosbach, K. Molecular
Imprinting of Amino Acid Derivatives at Low Temperature (0°C)
Using Photolytic Homolysis of Azobisnitriles. Anal. Biochem. 1989,
177 (1), 144−149.
(33) Suraniti, E.; Studer, V.; Sojic, N.; Mano, N. Fast and Easy
Enzyme Immobilization by Photoinitiated Polymerization for Efficient
Bioelectrochemical Devices. Anal. Chem. 2011, 83 (7), 2824−2828.
Biomacromolecules Article
DOI: 10.1021/acs.biomac.8b00019
Biomacromolecules 2018, 19, 1164−1174
1173
11. (34) Bhanvase, B. A.; Sonawane, S. H.; Pinjari, D. V.; Gogate, P. R.;
Pandit, A. B. Kinetic Studies of Semibatch Emulsion Copolymerization
of Methyl Methacrylate and Styrene in the Presence of High Intensity
Ultrasound and Initiator. Chem. Eng. Process. 2014, 85 (Supplement
C), 168−177.
(35) Chern, C.-S.; Lin, S.-Y.; Hsu, T. J. Effects of Temperature on
Styrene Emulsion Polymerization Kinetics. Polym. J. 1999, 31, 516.
(36) Striegler, S.; Dittel, M. A Sugar Discriminating Binuclear
Copper(II) Complex. J. Am. Chem. Soc. 2003, 125 (38), 11518−
11524.
(37) Koppel, D. E. Analysis of Macromolecular Polydispersity in
Intensity Correlation Spectroscopy: The Method of Cumulants. J.
Chem. Phys. 1972, 57 (11), 4814−4820.
(38) Frisken, B. J. Revisiting the Method of Cumulants for the
Analysis of Dynamic Light-Scattering Data. Appl. Opt. 2001, 40 (24),
4087−4091.
(39) Bryant, S. J.; Nuttelman, C. R.; Anseth, K. S. Cytocompatibility
of UV and Visible Light Photoinitiating Systems on Cultured NIH/
3T3 fibroblasts in vitro. J. Biomater. Sci., Polym. Ed. 2000, 11 (5), 439−
457.
(40) Capek, I.; Bartoň, J.; Tuan, L. Q.; Svoboda, V.; Novotnýa, V.
Emulsion Copolymerization of Methyl Methacrylate and Ethyl
Acrylate, 2. Effect of Emulsifier Concentration and Emulsifier Blend
Composition on the Polymerization Behaviour. Makromol. Chem.
1987, 188 (7), 1723−1733.
(41) L. Dimonie, V.; Sudol, D.; El-Aasser, M. Role of Surfactants in
Emulsion Polymerization Polymers by Design. Rev Chim (Bucureti)
2008, 59, 1218−1221.
(42) Gichinga, M. G.; Striegler, S.; Dunaway, N. A.; Barnett, J. D.
Miniemulsion Polymers as Solid Support for Transition Metal
Catalysts. Polymer 2010, 51 (3), 606−615.
(43) Dvorakova, G.; Biffis, A. Room Temperature Preparation of
Highly Crosslinked microgels. Polym. Bull. 2010, 64 (2), 107.
(44) Pille, L.; Solomon, D. H. Studies on Microgels, 1. Microgel
Formation Studied by Gel-Permeation Chromatography with an On-
line Light Scattering Detector. Macromol. Chem. Phys. 1994, 195 (7),
2477−2489.
(45) Murphy, R. W.; Farkas, B. E.; Jones, O. G. Effect of Crosslinking
on the Physical and Chemical Properties of β-Lactoglobulin (Blg)
Microgels. J. Colloid Interface Sci. 2017, 505, 736−744.
(46) Kim, J. W.; Kim, B. S.; Suh, K. D. Monodisperse Micron-sized
Cross-linked Polystyrene Particles. VI. Understanding of Nucleated
Particle Formation and Particle Growth. Colloid Polym. Sci. 2000, 278
(6), 591−594.
(47) Martínez, V. S.; Álvarez, L. P.; Hernáez, E.; Herrero, T.; Katime,
I. Synthesis, Characterization, and Influence of Synthesis Parameters
on Particle Sizes of a New Microgel Family. J. Polym. Sci., Part A:
Polym. Chem. 2007, 45 (17), 3833−3842.
(48) Bhattacharya, S.; Eckert, F.; Boyko, V.; Pich, A. Temperature-,
pH-, and Magnetic-Field-Sensitive Hybrid Microgels. Small 2007, 3
(4), 650−657.
(49) Al-Manasir, N.; Kjøniksen, A.-L.; Nyström, B. Preparation and
Characterization of Cross-linked Polymeric Nanoparticles for
Enhanced Oil Recovery Applications. J. Appl. Polym. Sci. 2009, 113
(3), 1916−1924.
(50) Xia, X.; Hu, Z. Synthesis and Light Scattering Study of
Microgels with Interpenetrating Polymer Networks. Langmuir 2004,
20 (6), 2094−2098.
(51) Lee, K.-C.; Lee, S.-Y. Preparation of Highly Cross-linked,
Monodisperse Poly(methyl methacrylate) Microspheres by Dispersion
Polymerization; Part I. Batch Processes. Macromol. Res. 2007, 15 (3),
244−255.
(52) Chen, R. F. Fluorescent pH Indicator. Spectral Changes of 4-
Methylumbelliferone. Anal. Lett. 1968, 1 (7), 423−428.
(53) Golker, K.; Nicholls, I. A. The Effect of Crosslinking Density on
Molecularly Imprinted Polymer Morphology and Recognition. Eur.
Polym. J. 2016, 75, 423−430.
(54) Choi, S.-Y.; Youn, H. J.; Yu, J. Enzymatic Characterization of
Glycosidase Antibodies Raised Against a Chair Transition State Analog
and the Retained Catalytic Activity from The Expressed Single Chain
Antibody Fragments. Mol. Cells 2002, 13, 463−469.
Biomacromolecules Article
DOI: 10.1021/acs.biomac.8b00019
Biomacromolecules 2018, 19, 1164−1174
1174