Chromatography is a family of analytical chemistry techniques used to separate mixtures based on differences in how components interact with two phases - a stationary phase and a mobile phase. The document discusses the history and definition of chromatography, as well as several types including liquid chromatography, gas chromatography, paper chromatography, thin layer chromatography. It provides examples of chromatography uses in fields like petroleum engineering, forensics, and environmental testing. The key aspects and processes of each technique are described.
Mixtures of compounds are very common in Organic Chemistry. Most reactions produce more than one product. Naturally occurring materials are only rarely 100% pure. It is therefore desirable to have a simple, fast and efficient way to determine the purity of Organic mixtures. The separation of a mixture by passing it, in solution, over an adsorbent (such as Alumina or Silica Gel) is the basic idea of Chromatography. Chromatography is a very general phenomenon. It involves the passage of a mobile phase across a stationary phase in a column. Usually a mixture of compounds is present in the mobile phase
Mixtures of compounds are very common in Organic Chemistry. Most reactions produce more than one product. Naturally occurring materials are only rarely 100% pure. It is therefore desirable to have a simple, fast and efficient way to determine the purity of Organic mixtures. The separation of a mixture by passing it, in solution, over an adsorbent (such as Alumina or Silica Gel) is the basic idea of Chromatography. Chromatography is a very general phenomenon. It involves the passage of a mobile phase across a stationary phase in a column. Usually a mixture of compounds is present in the mobile phase
Chromatography is the most widely accepted and important technique in the organic chemistry for the separation, purification, identification and characterization of components of a mixture.
• Chromatography is a method of separation in which the components to be separated are distributed between two phases, one of these is called a stationary phase and the other is a mobile phase which moves on stationary phase in a definite direction
This video is about Chromatography and its types and a little brief about it, which is presented by Tuba Nafees she is MSc graduate in Biotechnology from University of Karachi, Sindh Pakistan.
video link:
https://www.youtube.com/watch?v=88w4bJ1urM4
Chromatography is the most widely accepted and important technique in the organic chemistry for the separation, purification, identification and characterization of components of a mixture.
• Chromatography is a method of separation in which the components to be separated are distributed between two phases, one of these is called a stationary phase and the other is a mobile phase which moves on stationary phase in a definite direction
This video is about Chromatography and its types and a little brief about it, which is presented by Tuba Nafees she is MSc graduate in Biotechnology from University of Karachi, Sindh Pakistan.
video link:
https://www.youtube.com/watch?v=88w4bJ1urM4
Chromatography : A seperation techniqueSHIVANEE VYAS
Chromatography is a method of seperating mixture of components into individual components through equlibrium distribution between two phases.
Each chromatographic method essentially consists of 2 phases a staionary phase and a mobile phase.
Stationary phase : solid or liquid
Mobile phase : liquid or gas
TLC-Introduction, Principle, Procedure, and Applications.
Paper Chromatography-Introduction, Principle, Procedure, and Applications.
Column Chromatography-Introduction, Principle, Procedure, and Applications.
Metamorphic Rocks ( Definition - Classification - Common Rocks ) Muhammad Mamdouh
presented for Dr | Magdy Basta
Faculty of petroleum and mining engineering, Suez University
Physical Geology Course ( 2016 - 2017 )
presented by : G7 - Members
presented to : Dr | Hamdy El-Kady
Physical Chemistry Course 2016-2017
prepared By : Muhammad Mamdouh Abdulsalam
Faculty Of Petroleum Engineering, Suez University
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
The increased availability of biomedical data, particularly in the public domain, offers the opportunity to better understand human health and to develop effective therapeutics for a wide range of unmet medical needs. However, data scientists remain stymied by the fact that data remain hard to find and to productively reuse because data and their metadata i) are wholly inaccessible, ii) are in non-standard or incompatible representations, iii) do not conform to community standards, and iv) have unclear or highly restricted terms and conditions that preclude legitimate reuse. These limitations require a rethink on data can be made machine and AI-ready - the key motivation behind the FAIR Guiding Principles. Concurrently, while recent efforts have explored the use of deep learning to fuse disparate data into predictive models for a wide range of biomedical applications, these models often fail even when the correct answer is already known, and fail to explain individual predictions in terms that data scientists can appreciate. These limitations suggest that new methods to produce practical artificial intelligence are still needed.
In this talk, I will discuss our work in (1) building an integrative knowledge infrastructure to prepare FAIR and "AI-ready" data and services along with (2) neurosymbolic AI methods to improve the quality of predictions and to generate plausible explanations. Attention is given to standards, platforms, and methods to wrangle knowledge into simple, but effective semantic and latent representations, and to make these available into standards-compliant and discoverable interfaces that can be used in model building, validation, and explanation. Our work, and those of others in the field, creates a baseline for building trustworthy and easy to deploy AI models in biomedicine.
Bio
Dr. Michel Dumontier is the Distinguished Professor of Data Science at Maastricht University, founder and executive director of the Institute of Data Science, and co-founder of the FAIR (Findable, Accessible, Interoperable and Reusable) data principles. His research explores socio-technological approaches for responsible discovery science, which includes collaborative multi-modal knowledge graphs, privacy-preserving distributed data mining, and AI methods for drug discovery and personalized medicine. His work is supported through the Dutch National Research Agenda, the Netherlands Organisation for Scientific Research, Horizon Europe, the European Open Science Cloud, the US National Institutes of Health, and a Marie-Curie Innovative Training Network. He is the editor-in-chief for the journal Data Science and is internationally recognized for his contributions in bioinformatics, biomedical informatics, and semantic technologies including ontologies and linked data.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
1. محمم مدسكشن عبدالسالم محمود دوح4
مــــــوه خــالد حمدـــالشريـــف بةسكشن4
محـمد الفتاح عبد جميل محمودسكشن5
أح إبراهــــيم حمدي بيوميـــمدسكشن2
Suez University
Faculty of Petroleum and Mining Engineering
Petroleum Engineering Department
Chromatography
Dr.Hamdy El-Kady
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Chromatography
Definition and its History
It is a family of analytical chemistry techniques for the separation of mixtures. It also could
be defined as a physical method of separation that distributes components to separate between
two phases, one stationary (stationary phase), the other (the mobile phase) moving in a definite
direction. It was the Russian botanist Mikhail Tsvet (Mikhail Semyonovich Tsvet) who
invented the first chromatography technique in 1901.He continued to work with
chromatography in the first decade of the 20th century, primarily for the separation of
plant pigments such as chlorophyll, carotenes, and xanthophylls. Since these components
have different colors (green, orange, and yellow, respectively) they gave the technique its
name. New types of chromatography developed during the 1930s and 1940s made the
technique useful for many separation processes.
Keep in Mind :
The separation of molecules depends on differences of
1- size 2- shape
3-Mass 4- Charges
5- Solubility 6- Adsorption
Uses of chromatography & Advantages of using chromatography
- Government laboratories used to check:
1- for approved dyes in food.
2- that vegetables contained tiny amounts of pesticides and herbicides.
- it is also used in the field of petroleum engineering.
- Its main advantages are:
1- Require very minute amount for identification.
2- Can be used to identify substances that cannot be easily melted or distilled.
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Types of Chromatography:
1- Liquid chromatography: is used in the world to test water samples to look for pollution
in lakes and rivers. It is used to analyze metal ions and organic compounds in solutions.
Liquid chromatography uses liquids which may incorporate hydrophilic, insoluble
molecules.
2- Partition chromatography e.g. paper chromatography: is one of the most common types
of chromatography. It uses a strip of paper as the stationary phase. Capillary action is
used to pull the solvents up through the paper and separate the solutes.
3- Gas Chromatography: is used in airports to detect bombs and is used is forensics in
many different ways. It is used to analyze fibers on a person's body and also analyze
blood found at a crime scene. In gas chromatography helium is used to move a gaseous
mixture through a column of absorbent material. Thin layer chromatography (TLC).
4- Thin-layer Chromatography: uses an absorbent material on flat glass or plastic plates.
This is a simple and rapid method to check the purity of an organic compound. It is
used to detect pesticide or insecticide residues in food. Thin-layer chromatography is
also used in forensics to analyze the dye composition of fibers.
Keep in Mind :
All types of chromatography involve interaction between:
1- The mixture to be separated. 2- The stationary phase.
3- The mobile phase.
Liquid chromatography
Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid.
It can be carried out either in a column or a plane. Present day liquid chromatography that
generally utilizes very small packing particles and a relatively high pressure is referred to
as high performance liquid chromatography (HPLC).
In HPLC the sample is forced by a liquid at high pressure (the mobile phase) through a
column that is packed with a stationary phase composed of irregularly or spherically shaped
particles, a porous monolithic layer, or a porous membrane. HPLC is historically divided into
two different sub-classes based on the polarity of the mobile and stationary phases. Methods
in which the stationary phase is more polar than the mobile phase (e.g., toluene as the mobile
phase, silica as the stationary phase) are termed normal phase liquid chromatography
(NPLC) and the opposite (e.g., water-methanol mixture as the mobile phase and C18
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(octadecylsilyl) as the stationary phase) is termed reversed phase liquid chromatography
(RPLC).
Paper chromatography
Paper chromatography is an analytical
method used to separate colored
chemicals or substances. It is primarily
used as a teaching tool, having been
replaced by other chromatography
methods, such as thin-layer
chromatography. A paper
chromatography variant, two-
dimensional chromatography involves
using two solvents and rotating the paper
90° in between. This is useful for
separating complex mixtures of
compounds having similar polarity, for
example, amino acids. The setup has
three components. The mobile phase is a
FIG- Preparative HPLC apparatus
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solution that travels up the stationary phase, due to capillary action. The mobile
phase is generally an alcohol solvent mixture, while the stationary phase is a strip
of chromatography paper, also called a chromatogram. A chromatographic
method is called adsorption chromatography if the stationary phase is solid.
Rƒ value, solutes, and solvents
The retardation factor (Rƒ) may be defined as the ratio of the distance traveled by
the substance to the distance traveled by the solvent. Rƒ values are usually
expressed as a fraction of two decimal places. If Rƒ value of a solution is zero, the
solute remains in the stationary phase and thus it is immobile. If Rƒ value = 1 then
the solute has no affinity for the stationary phase and travels with the solvent
front. To calculate the Rƒ value, take the distance traveled by the substance
divided by the distance traveled by the solvent (as mentioned earlier in terms of
ratios). For example, if a compound travels 9.9 cm and the solvent front travels
12.7 cm, (9.9/12.7) the Rƒ value = 0.779 or 0.78. Rƒ value depends on temperature
and the solvent used in experiment, so several solvents offer several Rƒ values for
the same mixture of compound. A solvent in chromatography is the liquid the
paper is placed in, and the solute is the ink which is being separated.
Types of Paper Chromatography
1. Descending Paper Chromatography-In this type, development of the
chromatogram is done by allowing the solvent to travel down the paper. Here,
mobile phase is placed in solvent holder at the top. The spot is kept at the top and
above solvent flow down the paper from above.
2. Ascending Paper Chromatography-Here the solvent travels up the
chromatographic paper. Both Descending and Ascending Paper Chromatography
are used for the separation of organic and inorganic substances.
3. Ascending-Descending Paper Chromatography-It is the hybrid of both of the
above techniques. The upper part of Ascending Chromatography can be folded
over a rod in order to allow the paper to become Descending after crossing the
rod.
4. Radial Paper Chromatography-It is also called Circular Chromatography.
Here a circular filter paper is taken and the sample is deposited at the center of
the paper. After drying the spot, the filter paper is tied horizontally on a Petri dish
containing solvent, so that the wick of the paper is dipped in the solvent. The
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solvent rises through the wick and the components are separated into concentric
circles.
5. Two-Dimensional Paper Chromatography-In this technique a square or
rectangular paper is used. Here the sample is applied to one of the corners and
development is performed at right angle to the direction of the first run.
Gas Chromatography
Gas chromatography is one of the most widely used techniques for analyzing
hydrocarbon mixtures. Some of the advantages of chromatography are the range
of measurement (from ppm levels up to 100 %), the detection of a wide range of
components, and the repeatability of the measurements. Chromatography is used
in the laboratory, in permanently installed online systems, and in the field with
portable systems. No matter the location, style, or brand, all gas chromatographs
are composed of the same functional components: the sample handling system, the
chromatograph oven, and the controller electronics.
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Thin-layer chromatography
Thin-layer chromatography (TLC) is a chromatography technique used to separate non-
volatile mixtures. Thin-layer chromatography is performed on a sheet of glass, plastic, or
aluminium foil, which is coated with a thin layer of adsorbent material, usually silica gel,
aluminium oxide (alumina), or cellulose. This layer of adsorbent is known as the stationary
phase.
After the sample has been applied on the plate,
a solvent or solvent mixture (known as the
mobile phase) is drawn up the plate via
capillary action. Because different analytes
ascend the TLC plate at different rates,
separation is achieved. The mobile phase has
different properties from the stationary phase.
For example, with silica gel, a very polar
substance, non-polar mobile phases such as
heptane are used. The mobile phase may be a
mixture, allowing chemists to fine-tune the
bulk properties of the mobile phase.
After the experiment, the spots are visualized.
Often this can be done simply by projecting
ultraviolet light onto the sheet; the sheets are
treated with a phosphor, and dark spots
appear on the sheet where compounds absorb
the light impinging on a certain area.
Chemical processes can also be used to
visualize spots; anisaldehyde, for example,
forms colored adducts with many compounds,
and sulfuric acid will char most organic
compounds, leaving a dark spot on the sheet.
To quantify the results, the distance traveled
by the substance being considered is divided
by the total distance traveled by the mobile
phase. (The mobile phase must not be allowed to reach the end of the stationary phase.) This
ratio is called the retention factor or Rf. In general,a substance whose structure resembles the
stationary phase will have low Rf, while one that has a similar structure to the mobile phase
will have high retention factor. Retention factors are characteristic, but will change depending
on the exact condition of the mobile and stationary phase. For this reason, chemists usually
apply a sample of a known compound to the sheet before running the experiment.
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Thin-layer chromatography can be used to monitor the progress of a reaction, identify
compounds present in a given mixture, and determine the purity of a substance. Specific
examples of these applications include: analyzing ceramides and fatty acids, detection of
pesticides or insecticides in food and water, analyzing the dye composition of fibers in
forensics, assaying the radiochemical purity of radiopharmaceuticals, or identification of
medicinal plants and their constituents .
A number of enhancements can be made to the original method to automate the different
steps, to increase the resolution achieved with TLC and to allow more accurate quantitative
analysis. This method is referred to as HPTLC, or "high-performance TLC". HPTLC
typically uses thinner layers of stationary phase and smaller sample volumes, thus reducing
the loss of resolution due to diffusion.