1
A Map of The Major Metabolic
Pathways in A Typical Cell
3
A-Anabolic pathways:
Transforming small molecules into big molecules
constituting the body structures and machinery. It is
energy requiring, e.g., glycogenesis and lactose synthesis
B-Catabolic pathways:
Breakdown of large molecules into smaller
molecules to produce energy or smaller molecules or
reducing equivalents, e.g., HMP-shunt and uronic acid
pathway.
C-Amphibolic pathways:
They are utilized for both anabolic and catabolic
purposes, e.g., glycolysis and Krebs' cycle.
Learning Objectives• Outline the three stages of glycolysis.
• Describe the steps of glycolysis between glucose and
pyruvate and recognize all the intermediates and
enzymes and the cofactors that participate in the
reactions.
• Mention ATP-generating reactions.
• Illustrate the regulation of glycolysis.
5
March 17, 2018 Dr. Mohamed Z Gad 6
CHO metabolism in mammalian cells can be
classified into:
1. Glycolysis: Oxidation of glucose to
pyruvate (aerobic state) or lactate
(anaerobic state)
2. Krebs cycle: After oxidation of pyruvate
to acetyl CoA, acetyl CoA enters the
Krebs cycle for the aim of production of
ATP.
3. Hexose monophosphate shunt: Enables
cells to produce ribose-5-phosphate and
NADPH.
4. Glycogenesis: Synthesis of glycogen from
glucose, when glucose levels are high
5. Glycogenolysis: Degradation of glycogen
to glucose when glucose in short supply.
6. Gluconeogenesis: Formation of glucose
from noncarbohydrate sources.
Glucose is the major fuel of mostGlucose is the major fuel of most
organisms. The major pathways of CHOorganisms. The major pathways of CHO
metabolism either begin or end withmetabolism either begin or end with
glucose.glucose.
March 17, 2018 Dr. Mohamed Z Gad 7
Glycolysis occurs in all human cells. Glycolysis is believed to beGlycolysis occurs in all human cells. Glycolysis is believed to be
among the oldest of all the biochemical pathways.among the oldest of all the biochemical pathways.
Aerobic: Glucose  Pyruvate
Anaerobic: Glucose  Lactate (or ethanol & acetic
acid)Glycolysis (10 reactions in 3 stages, all in cytoplasm)
1) Priming stage: D-Glucose + 2ATP  D-fructose 1,6-biphosphate + 2ADP + 2H+
2) Splitting stage : D-Fructose 1,6-biphosphate  2 D-Glyceraldehyde 3-phosphate
3) Oxidoreduction – Phosphorylation stage:
2 D-Glyceraldehyde 3-phosphate + 4ADP + 2Pi + 2H+  2Lactate + 4ATP
-----------------------------------------------------------------------------
Sum:
Glucose + 2ADP + 2Pi ----- 2 Lactate + 2ATP + 2H2O (Anaerobic)
Glucose + 2ADP + 2Pi + 2NAD+
---- 2 pyruvate + 2ATP + 2NADH + 2H+
+ 2H2O
(Aerobic)
March 17, 2018 Dr. Mohamed Z Gad 8
1) Priming Stage
• Glucose (and other hexoses) are
phosphorylated immediately upon
entry into the cell. Phosphorylation
prevents transport of glucose out of
the cell and increases the reactivity
of oxygen in the resulting phosphate
ester.
• Several isoenzymes of hexokinase
with different Km values for
glucose are located in different
tissues. Brain hexokinase has a
particularly low Km for glucose.
• The major enzyme for
phosphorylating glucose in liver is
glucokinase.
• Steps catalyzed by hexokinase &
PFK-1 are irreversible.
March 17, 2018 Dr. Mohamed Z Gad 9
Differences between Glucokinase & Hexokinase
HexokinaseHexokinase GlucokinaseGlucokinase
 Present in all tissues  Liver only
 Low Km for glucose (<0.1
mM)
 Higher Km for glucose
 Strongly inhibited by G6P  Not inhibited by G6P
 Non-inducible enzyme, not
affected by diabetes or
insulin
 Inducible, synthesis induced by
insulin & repressed in diabetes
 Level of enzyme is not
affected by fasting or high
CHO diet
 Depends on glucose concentration
 Act on glucose, fructose and
galactose
 Glucose only
March 17, 2018
2) Splitting Stage
• The reaction catalysed by aldolase is
the reverse of aldol condensation.
• Although the cleavage of F1,6BP is
energetically unfavourable, rapid
removal of the product drives the
reaction forward.
• Of the two products of the aldolase
reaction, only GAP (or G3P) serves as a
substrate for the next reaction in
glycolysis.
• To prevent the loss of the other three-
carbon unit, triose phosphate isomerase
catalyses the interconversion of DHAP
& G3P. Because of this reaction, the
original molecule of glucose has now
been converted to two molecules of
G3P.
March 17, 2018 Dr. Mohamed Z Gad 11
3) Oxidoreduction –
Phosphorylation
Stage• G-3-P dehydrogenase is a tetramer,
each subunit contains 1 binding site
for G3P & another for NAD+
(NAD+
is permanently bound to the enzyme).
• G3P  1,3-BPG  3PG and PEP
 Pyruvate are examples of
“substrate–level” phosphorylation.
• 3-PG  2-PG is mediated by an
intermediate [2,3-BPG]. Most cells
have low amounts of 2,3-BPG except
in RBCs, which act as allosteric
modifier of Hb-O2 binding.
• PEP  Pyruvate is an “irreversible
reaction” due to free energy loss
associated with tautomerization of
the enol to the more stable keto form.
ADP is converted to ATP by the direct
transfer of a phosphoryl group from a high
energy compound.
What is meant by “substrate–
level phosphorylation” ?
Why glycolysis under anaerobic
conditions proceed to lactate and
not just stop at pyruvate
formation ?
The reaction of lactate dehydrogenase is essential in
anaerobic glycolysis , as it is the mean for reoxidizing
NADH formed in the G-3-P dehydrogenase step to re-
enter into the glycolysis cycle. In aerobic glycolysis
reoxidation takes place in mitochondria by the
respiratory chain.
Overall pathway of Glycolysis & ATP
Formation
Number of ATP generated from
glycolysis
Enzyme Aerobic Anaerobic
Hexokinase -1 ATP -1 ATP
PFK-1 -1 ATP -1 ATP
G-3-P
dehydrog.
+6 ATP ----
Phospho-
glycerate
kinase
+2 ATP +2 ATP
Pyruvate
kinase
+2 ATP +2 ATP
Sum +8 ATP +2 ATP
Dr. Mohamed Z Gad 14
March 17, 2018 Dr. Mohamed Z Gad 15
Louis Pasteur, the great 19th century French chemist
and microbiologist, was the first scientist to observe the
following phenomenon. “Cells that can oxidize glucose
completely to CO2 and H2O utilize glucose more rapidly
in the absence of O2 than in its presence”. It would
appear that O2 inhibits glucose consumption. Thus,
another definition for Pasteur effect is: inhibition of
glucose utilization and lactate accumulation by the
initiation of respiration (O2 consumption)… Can you
explain why ?
The reason behind this phenomenon is that complete oxidation of glucose
under aerobic conditions yield much more ATP (~38 ATP) than anaerobic
glycolysis (~2ATP). Thus it is anticipated that the rate of glucose consumption
will be 19-20 times faster under anaerobic condition to meet the metabolic
demand in a way equivalent to aerobic conditions.
Regulation of
Glycolysis
March 17, 2018 Dr. Mohamed Z Gad 16
Rate of glycolysis is controlled primarily by
allosteric regulation of the 3 key enzymes
(irreversible steps), hexokinase, PFK-1, and
pyruvate kinase.
Enzyme Activator Inhibitor
Hexokinase AMP, ADP, Pi G-6-P
PFK-1 F-6-P, AMP, F-
2,6-DP (liver
only)
NADH, H+
, citrate,
ATP
Pyruvate
kinase
AMP, F-1,6-DP ATP, acetyl CoA,
phosphorylation
• PFK-1 is the major regulatory
enzyme of glycolysis. In the liver
only, PFK-1 is activated by fructose-
2,6-diphosphate (F-2,6-DP).
• PFK-2, the enzyme that synthesize
the activator F-2,6-DP, is itself a
regulatory enzyme. It is inhibited by
citrate & ATP and by
phosphorylation. The reverse
reaction is catalyzed by fructose-2,6-
diphosphatase(F-2,6-DPase).
• Hormones also regulate glycolysis
e.g., glucagon inhibits glycolysis by
repressing the synthesis of F-2,6-DP.
Insulin promotes glycolysis by
stimulating the synthesis of F-2,6-DP.
What effects do fluoride and
magnesium have on glycolysis ?
March 17, 2018 Dr. Mohamed Z Gad 18
•
Comments on Glycolysis
 Glycolysis is the only pathway that produce ATP in absence of O2.
 The best known inhibitors of the glycolytic pathway include:
 2-Deoxyglucose:2-Deoxyglucose: causes inhibition of hexokinase.
 Sulfhydryl reagentsSulfhydryl reagents (e.g. Hg-compounds and alkylating agents as
iodoacetate); inhibit glyceraldehydes-3-phosphate dehydrogenase
which has cysteine residue in the active site.
 Fluoride: a potent inhibitor of enolase. Thus, fluoride is usually
added to blood samples to inhibit glycolysis before estimation of
blood glucose.
 MagnesiumMagnesium:: required for kinase reactions by forming Mg-ATP
complex.
 Accumulation of lactate is responsible for muscle fatigue and cramps
observed under heavy exercise (anaerobic glycolysis).
 In RBCs, glycolysis is the major source of ATP since RBCs lack
mitochondrial oxidation.
Pyruvate dehydrogenase complex (PDC) is a complex of
three enzymes that converts pyruvate into acetyl-CoA by a
process called pyruvate decarboxylation. Acetyl-CoA may
then be used in the citric acid cycle to carry out
cellular respiration, and this complex links the glycolysis
metabolic pathway to the citric acid cycle
Pyruvate dehydrogenase (E1)
Dihydrolipoyl transacetylase (E2)
Dihydrolipoyl dehydrogenase (E3)
This is Why
OAA  D, N, I, K,
T, M
Formation of glucose from noncarbohydrate
sources
23
The source of pyruvate and oxaloacetate for
gluconeogenesis during fasting or carbohydrate
starvation is mainly amino acid catabolism.
Some amino acids are catabolized to pyruvate,
oxaloacetate, or precursors of these.
Muscle proteins may break down to supply amino
acids. These are transported to liver where they are
deaminated and converted to gluconeogenesis
inputs.
Glycerol, derived from hydrolysis of triacylglycerols
in fat cells, is also a significant input to
gluconeogenesis.
24
Dietary & muscle
proteins
Amino acids
Noncarbohydrate precursors of
glucose
25
Main sites of gluconeogenesis:
• Major site: Liver.
• Minor site: Kidney.
• Very little:
– Brain.
– Muscle (skeletal and heart).
In liver and kidney it helps to maintain the glucose level
in the blood so that brain and muscle can extract
sufficient glucose from it to meet their metabolic
demands.
26
Gluconeogenesis Versus Glycolysis:
7 steps are shared between glycolysis and
gluconeogenesis.
3 essentially irreversible steps shift the equilibrium
far on the side of glycolysis.
Most of the decrease in free energy (consuming
energy) in glycolysis takes place during these 3 steps.
27
28
29
1. Phosphoenolpyruvate is formed from
pyruvate:
2. Fructose 6-phosphate is formed from fructose 1,6-
bisphosphate:
3. Glucose is formed by hydrolysis of glucose 6-phosphate:
HMP Shunt
Hexose Mono Phosphate Shunt = Pentose Phosphate
Pathway = Complete Glucose Oxidation
Function : Production of
For NADPH
Ribose 5P
Site :
In the cytoplasm of all cells except muscle, and
nonlactating mammary gland (low activity)
NADPH + H+
is formed from
two separate reactions.
The glucose 6-phosphate DH
(G6PD) reaction is the rate
limiting step and is essentially
irreversible.
Cells have a greater need for
NADPH than ribose 5-
phosphate.
CHO metabolism
CHO metabolism
CHO metabolism

CHO metabolism

  • 1.
  • 2.
    A Map ofThe Major Metabolic Pathways in A Typical Cell
  • 3.
  • 4.
    A-Anabolic pathways: Transforming smallmolecules into big molecules constituting the body structures and machinery. It is energy requiring, e.g., glycogenesis and lactose synthesis B-Catabolic pathways: Breakdown of large molecules into smaller molecules to produce energy or smaller molecules or reducing equivalents, e.g., HMP-shunt and uronic acid pathway. C-Amphibolic pathways: They are utilized for both anabolic and catabolic purposes, e.g., glycolysis and Krebs' cycle.
  • 5.
    Learning Objectives• Outlinethe three stages of glycolysis. • Describe the steps of glycolysis between glucose and pyruvate and recognize all the intermediates and enzymes and the cofactors that participate in the reactions. • Mention ATP-generating reactions. • Illustrate the regulation of glycolysis. 5
  • 6.
    March 17, 2018Dr. Mohamed Z Gad 6 CHO metabolism in mammalian cells can be classified into: 1. Glycolysis: Oxidation of glucose to pyruvate (aerobic state) or lactate (anaerobic state) 2. Krebs cycle: After oxidation of pyruvate to acetyl CoA, acetyl CoA enters the Krebs cycle for the aim of production of ATP. 3. Hexose monophosphate shunt: Enables cells to produce ribose-5-phosphate and NADPH. 4. Glycogenesis: Synthesis of glycogen from glucose, when glucose levels are high 5. Glycogenolysis: Degradation of glycogen to glucose when glucose in short supply. 6. Gluconeogenesis: Formation of glucose from noncarbohydrate sources. Glucose is the major fuel of mostGlucose is the major fuel of most organisms. The major pathways of CHOorganisms. The major pathways of CHO metabolism either begin or end withmetabolism either begin or end with glucose.glucose.
  • 7.
    March 17, 2018Dr. Mohamed Z Gad 7 Glycolysis occurs in all human cells. Glycolysis is believed to beGlycolysis occurs in all human cells. Glycolysis is believed to be among the oldest of all the biochemical pathways.among the oldest of all the biochemical pathways. Aerobic: Glucose  Pyruvate Anaerobic: Glucose  Lactate (or ethanol & acetic acid)Glycolysis (10 reactions in 3 stages, all in cytoplasm) 1) Priming stage: D-Glucose + 2ATP  D-fructose 1,6-biphosphate + 2ADP + 2H+ 2) Splitting stage : D-Fructose 1,6-biphosphate  2 D-Glyceraldehyde 3-phosphate 3) Oxidoreduction – Phosphorylation stage: 2 D-Glyceraldehyde 3-phosphate + 4ADP + 2Pi + 2H+  2Lactate + 4ATP ----------------------------------------------------------------------------- Sum: Glucose + 2ADP + 2Pi ----- 2 Lactate + 2ATP + 2H2O (Anaerobic) Glucose + 2ADP + 2Pi + 2NAD+ ---- 2 pyruvate + 2ATP + 2NADH + 2H+ + 2H2O (Aerobic)
  • 8.
    March 17, 2018Dr. Mohamed Z Gad 8 1) Priming Stage • Glucose (and other hexoses) are phosphorylated immediately upon entry into the cell. Phosphorylation prevents transport of glucose out of the cell and increases the reactivity of oxygen in the resulting phosphate ester. • Several isoenzymes of hexokinase with different Km values for glucose are located in different tissues. Brain hexokinase has a particularly low Km for glucose. • The major enzyme for phosphorylating glucose in liver is glucokinase. • Steps catalyzed by hexokinase & PFK-1 are irreversible.
  • 9.
    March 17, 2018Dr. Mohamed Z Gad 9 Differences between Glucokinase & Hexokinase HexokinaseHexokinase GlucokinaseGlucokinase  Present in all tissues  Liver only  Low Km for glucose (<0.1 mM)  Higher Km for glucose  Strongly inhibited by G6P  Not inhibited by G6P  Non-inducible enzyme, not affected by diabetes or insulin  Inducible, synthesis induced by insulin & repressed in diabetes  Level of enzyme is not affected by fasting or high CHO diet  Depends on glucose concentration  Act on glucose, fructose and galactose  Glucose only
  • 10.
    March 17, 2018 2)Splitting Stage • The reaction catalysed by aldolase is the reverse of aldol condensation. • Although the cleavage of F1,6BP is energetically unfavourable, rapid removal of the product drives the reaction forward. • Of the two products of the aldolase reaction, only GAP (or G3P) serves as a substrate for the next reaction in glycolysis. • To prevent the loss of the other three- carbon unit, triose phosphate isomerase catalyses the interconversion of DHAP & G3P. Because of this reaction, the original molecule of glucose has now been converted to two molecules of G3P.
  • 11.
    March 17, 2018Dr. Mohamed Z Gad 11 3) Oxidoreduction – Phosphorylation Stage• G-3-P dehydrogenase is a tetramer, each subunit contains 1 binding site for G3P & another for NAD+ (NAD+ is permanently bound to the enzyme). • G3P  1,3-BPG  3PG and PEP  Pyruvate are examples of “substrate–level” phosphorylation. • 3-PG  2-PG is mediated by an intermediate [2,3-BPG]. Most cells have low amounts of 2,3-BPG except in RBCs, which act as allosteric modifier of Hb-O2 binding. • PEP  Pyruvate is an “irreversible reaction” due to free energy loss associated with tautomerization of the enol to the more stable keto form.
  • 12.
    ADP is convertedto ATP by the direct transfer of a phosphoryl group from a high energy compound. What is meant by “substrate– level phosphorylation” ?
  • 13.
    Why glycolysis underanaerobic conditions proceed to lactate and not just stop at pyruvate formation ? The reaction of lactate dehydrogenase is essential in anaerobic glycolysis , as it is the mean for reoxidizing NADH formed in the G-3-P dehydrogenase step to re- enter into the glycolysis cycle. In aerobic glycolysis reoxidation takes place in mitochondria by the respiratory chain.
  • 14.
    Overall pathway ofGlycolysis & ATP Formation Number of ATP generated from glycolysis Enzyme Aerobic Anaerobic Hexokinase -1 ATP -1 ATP PFK-1 -1 ATP -1 ATP G-3-P dehydrog. +6 ATP ---- Phospho- glycerate kinase +2 ATP +2 ATP Pyruvate kinase +2 ATP +2 ATP Sum +8 ATP +2 ATP Dr. Mohamed Z Gad 14
  • 15.
    March 17, 2018Dr. Mohamed Z Gad 15 Louis Pasteur, the great 19th century French chemist and microbiologist, was the first scientist to observe the following phenomenon. “Cells that can oxidize glucose completely to CO2 and H2O utilize glucose more rapidly in the absence of O2 than in its presence”. It would appear that O2 inhibits glucose consumption. Thus, another definition for Pasteur effect is: inhibition of glucose utilization and lactate accumulation by the initiation of respiration (O2 consumption)… Can you explain why ? The reason behind this phenomenon is that complete oxidation of glucose under aerobic conditions yield much more ATP (~38 ATP) than anaerobic glycolysis (~2ATP). Thus it is anticipated that the rate of glucose consumption will be 19-20 times faster under anaerobic condition to meet the metabolic demand in a way equivalent to aerobic conditions.
  • 16.
    Regulation of Glycolysis March 17,2018 Dr. Mohamed Z Gad 16 Rate of glycolysis is controlled primarily by allosteric regulation of the 3 key enzymes (irreversible steps), hexokinase, PFK-1, and pyruvate kinase. Enzyme Activator Inhibitor Hexokinase AMP, ADP, Pi G-6-P PFK-1 F-6-P, AMP, F- 2,6-DP (liver only) NADH, H+ , citrate, ATP Pyruvate kinase AMP, F-1,6-DP ATP, acetyl CoA, phosphorylation • PFK-1 is the major regulatory enzyme of glycolysis. In the liver only, PFK-1 is activated by fructose- 2,6-diphosphate (F-2,6-DP). • PFK-2, the enzyme that synthesize the activator F-2,6-DP, is itself a regulatory enzyme. It is inhibited by citrate & ATP and by phosphorylation. The reverse reaction is catalyzed by fructose-2,6- diphosphatase(F-2,6-DPase). • Hormones also regulate glycolysis e.g., glucagon inhibits glycolysis by repressing the synthesis of F-2,6-DP. Insulin promotes glycolysis by stimulating the synthesis of F-2,6-DP.
  • 17.
    What effects dofluoride and magnesium have on glycolysis ?
  • 18.
    March 17, 2018Dr. Mohamed Z Gad 18 • Comments on Glycolysis  Glycolysis is the only pathway that produce ATP in absence of O2.  The best known inhibitors of the glycolytic pathway include:  2-Deoxyglucose:2-Deoxyglucose: causes inhibition of hexokinase.  Sulfhydryl reagentsSulfhydryl reagents (e.g. Hg-compounds and alkylating agents as iodoacetate); inhibit glyceraldehydes-3-phosphate dehydrogenase which has cysteine residue in the active site.  Fluoride: a potent inhibitor of enolase. Thus, fluoride is usually added to blood samples to inhibit glycolysis before estimation of blood glucose.  MagnesiumMagnesium:: required for kinase reactions by forming Mg-ATP complex.  Accumulation of lactate is responsible for muscle fatigue and cramps observed under heavy exercise (anaerobic glycolysis).  In RBCs, glycolysis is the major source of ATP since RBCs lack mitochondrial oxidation.
  • 19.
    Pyruvate dehydrogenase complex(PDC) is a complex of three enzymes that converts pyruvate into acetyl-CoA by a process called pyruvate decarboxylation. Acetyl-CoA may then be used in the citric acid cycle to carry out cellular respiration, and this complex links the glycolysis metabolic pathway to the citric acid cycle
  • 20.
    Pyruvate dehydrogenase (E1) Dihydrolipoyltransacetylase (E2) Dihydrolipoyl dehydrogenase (E3)
  • 22.
    This is Why OAA D, N, I, K, T, M
  • 23.
    Formation of glucosefrom noncarbohydrate sources 23
  • 24.
    The source ofpyruvate and oxaloacetate for gluconeogenesis during fasting or carbohydrate starvation is mainly amino acid catabolism. Some amino acids are catabolized to pyruvate, oxaloacetate, or precursors of these. Muscle proteins may break down to supply amino acids. These are transported to liver where they are deaminated and converted to gluconeogenesis inputs. Glycerol, derived from hydrolysis of triacylglycerols in fat cells, is also a significant input to gluconeogenesis. 24
  • 25.
    Dietary & muscle proteins Aminoacids Noncarbohydrate precursors of glucose 25
  • 26.
    Main sites ofgluconeogenesis: • Major site: Liver. • Minor site: Kidney. • Very little: – Brain. – Muscle (skeletal and heart). In liver and kidney it helps to maintain the glucose level in the blood so that brain and muscle can extract sufficient glucose from it to meet their metabolic demands. 26
  • 27.
    Gluconeogenesis Versus Glycolysis: 7steps are shared between glycolysis and gluconeogenesis. 3 essentially irreversible steps shift the equilibrium far on the side of glycolysis. Most of the decrease in free energy (consuming energy) in glycolysis takes place during these 3 steps. 27
  • 28.
  • 29.
    29 1. Phosphoenolpyruvate isformed from pyruvate: 2. Fructose 6-phosphate is formed from fructose 1,6- bisphosphate: 3. Glucose is formed by hydrolysis of glucose 6-phosphate:
  • 31.
    HMP Shunt Hexose MonoPhosphate Shunt = Pentose Phosphate Pathway = Complete Glucose Oxidation Function : Production of For NADPH Ribose 5P Site : In the cytoplasm of all cells except muscle, and nonlactating mammary gland (low activity)
  • 32.
    NADPH + H+ isformed from two separate reactions. The glucose 6-phosphate DH (G6PD) reaction is the rate limiting step and is essentially irreversible. Cells have a greater need for NADPH than ribose 5- phosphate.

Editor's Notes

  • #22 Here is the Whole Cycle. All cyclic pathways have to have an acceptor molecule, here oxaloacetic acid (OAA) for the input, here acetyl part that come from pyruvate. We will do each enzyme separately, but look how it is put together shading the input acetyl carbons so that during this “turn” of the cycle, the CO2 that comes off (circled here in red) do not come from the acetyl carbons, but from OAA (oxaloacetic acid) the acceptor. The other outputs from the cycle (besides CO2) are energy metabolites: 3 NADHs, 1 FADH2 and a GTP. The GTP is the same worth as an ATP. So as the cycle spins it has all these outputs. CO2 is a metabolic end product and a waste from heterotrophs, but a carbon source of photosynthetic and other autotrophs. The NADHs and FADH2 will be oxidized (in the mitochondria) by the electron transport system, producing the proton motive force to produce ATP (we will do this later in Chapter 19). Now lets look at each CAC enzyme.
  • #23 This is the biosynthetic output of CAC and reactions just prior to CAC.