1. Glycolysis is the pathway that breaks down glucose to pyruvate, generating a small amount of ATP.
2. Gluconeogenesis is the formation of glucose from non-carbohydrate precursors like amino acids or glycerol, mainly occurring in the liver and kidneys.
3. The hexose monophosphate shunt generates reducing power in the form of NADPH and produces ribose-5-phosphate from glucose-6-phosphate.
Triacylglycerol and compound lipid metabolismDipesh Tamrakar
Biosynthesis and metabolic regulation of triglyceride and other compound lipids: glycerophospholipids, sphingophospholipids, ether glycerolipids and glycolipids
A detailed account of process of gluconeogenesis with mechanisms of important enzymes.We shall also talk extensively about why the process is not the reversible o glycolysis as is commonly perceived. Also focused on its regulatory aspect in conjunction with glycolysis.
coordination between different metabolic pathways inside the body is called integration of metabolism. this presentation discuss about how metabolism can be regulated and integrated in liver, muscle and adipose tissue.
intro of glycolysis there cycle and step - function-significance-defination-glucogenesis cycle-significance of gluconeogenesis-function of gluconeogenesis-conclusion
All about "Lipid metabolism" - case-based discussions and multiple- -choice q...Namrata Chhabra
Revision of fundamental facts of lipid metabolism through clinical discussion, and simultaneous assessment of learning through multiple choice questions
Triacylglycerol and compound lipid metabolismDipesh Tamrakar
Biosynthesis and metabolic regulation of triglyceride and other compound lipids: glycerophospholipids, sphingophospholipids, ether glycerolipids and glycolipids
A detailed account of process of gluconeogenesis with mechanisms of important enzymes.We shall also talk extensively about why the process is not the reversible o glycolysis as is commonly perceived. Also focused on its regulatory aspect in conjunction with glycolysis.
coordination between different metabolic pathways inside the body is called integration of metabolism. this presentation discuss about how metabolism can be regulated and integrated in liver, muscle and adipose tissue.
intro of glycolysis there cycle and step - function-significance-defination-glucogenesis cycle-significance of gluconeogenesis-function of gluconeogenesis-conclusion
All about "Lipid metabolism" - case-based discussions and multiple- -choice q...Namrata Chhabra
Revision of fundamental facts of lipid metabolism through clinical discussion, and simultaneous assessment of learning through multiple choice questions
Supplying a huge array of metabolic intermediates for biosynthetic reactions. Normally carbohydrate metabolism supplies more than half of the energy requirements of the body. In fact the brain largely depends upon carbohydrate
Carbohydrate metabolism comprises glycolysis, HMP shunt, Gluconeogenesis, Glycogenolysis, TCA cycle, with Glucose-6-phosphate dehydrogenase deficiency disorder.
the all the content in this profile is completed by the teachers, students as well as other health care peoples.
thank you, all the respected peoples, for giving the information to complete this presentation.
this information is free to use by anyone.
Carbohydrates are the sugars, starches and fibers found in fruits, grains, vegetables and milk products. Though often maligned in trendy diets, carbohydrates — one of the basic food groups — are important to a healthy diet.
Ice cream is called the Glamorous girl of the industries.
This presentation is prepared as our academical skill development project under the course named as Dairy Product Technology taken by Professor A K M Humayun Kober.
This presentation is made by Group E of 8th batch of Faculty of Food Science and Technology, Chattogram Veterinary and Animal Sciences University.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Toxic effects of heavy metals : Lead and Arsenicsanjana502982
Heavy metals are naturally occuring metallic chemical elements that have relatively high density, and are toxic at even low concentrations. All toxic metals are termed as heavy metals irrespective of their atomic mass and density, eg. arsenic, lead, mercury, cadmium, thallium, chromium, etc.
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
4. A-Anabolic pathways:
Transforming small molecules into big molecules
constituting the body structures and machinery. It is
energy requiring, e.g., glycogenesis and lactose synthesis
B-Catabolic pathways:
Breakdown of large molecules into smaller
molecules to produce energy or smaller molecules or
reducing equivalents, e.g., HMP-shunt and uronic acid
pathway.
C-Amphibolic pathways:
They are utilized for both anabolic and catabolic
purposes, e.g., glycolysis and Krebs' cycle.
5. Learning Objectives• Outline the three stages of glycolysis.
• Describe the steps of glycolysis between glucose and
pyruvate and recognize all the intermediates and
enzymes and the cofactors that participate in the
reactions.
• Mention ATP-generating reactions.
• Illustrate the regulation of glycolysis.
5
6. March 17, 2018 Dr. Mohamed Z Gad 6
CHO metabolism in mammalian cells can be
classified into:
1. Glycolysis: Oxidation of glucose to
pyruvate (aerobic state) or lactate
(anaerobic state)
2. Krebs cycle: After oxidation of pyruvate
to acetyl CoA, acetyl CoA enters the
Krebs cycle for the aim of production of
ATP.
3. Hexose monophosphate shunt: Enables
cells to produce ribose-5-phosphate and
NADPH.
4. Glycogenesis: Synthesis of glycogen from
glucose, when glucose levels are high
5. Glycogenolysis: Degradation of glycogen
to glucose when glucose in short supply.
6. Gluconeogenesis: Formation of glucose
from noncarbohydrate sources.
Glucose is the major fuel of mostGlucose is the major fuel of most
organisms. The major pathways of CHOorganisms. The major pathways of CHO
metabolism either begin or end withmetabolism either begin or end with
glucose.glucose.
7. March 17, 2018 Dr. Mohamed Z Gad 7
Glycolysis occurs in all human cells. Glycolysis is believed to beGlycolysis occurs in all human cells. Glycolysis is believed to be
among the oldest of all the biochemical pathways.among the oldest of all the biochemical pathways.
Aerobic: Glucose Pyruvate
Anaerobic: Glucose Lactate (or ethanol & acetic
acid)Glycolysis (10 reactions in 3 stages, all in cytoplasm)
1) Priming stage: D-Glucose + 2ATP D-fructose 1,6-biphosphate + 2ADP + 2H+
2) Splitting stage : D-Fructose 1,6-biphosphate 2 D-Glyceraldehyde 3-phosphate
3) Oxidoreduction – Phosphorylation stage:
2 D-Glyceraldehyde 3-phosphate + 4ADP + 2Pi + 2H+ 2Lactate + 4ATP
-----------------------------------------------------------------------------
Sum:
Glucose + 2ADP + 2Pi ----- 2 Lactate + 2ATP + 2H2O (Anaerobic)
Glucose + 2ADP + 2Pi + 2NAD+
---- 2 pyruvate + 2ATP + 2NADH + 2H+
+ 2H2O
(Aerobic)
8. March 17, 2018 Dr. Mohamed Z Gad 8
1) Priming Stage
• Glucose (and other hexoses) are
phosphorylated immediately upon
entry into the cell. Phosphorylation
prevents transport of glucose out of
the cell and increases the reactivity
of oxygen in the resulting phosphate
ester.
• Several isoenzymes of hexokinase
with different Km values for
glucose are located in different
tissues. Brain hexokinase has a
particularly low Km for glucose.
• The major enzyme for
phosphorylating glucose in liver is
glucokinase.
• Steps catalyzed by hexokinase &
PFK-1 are irreversible.
9. March 17, 2018 Dr. Mohamed Z Gad 9
Differences between Glucokinase & Hexokinase
HexokinaseHexokinase GlucokinaseGlucokinase
Present in all tissues Liver only
Low Km for glucose (<0.1
mM)
Higher Km for glucose
Strongly inhibited by G6P Not inhibited by G6P
Non-inducible enzyme, not
affected by diabetes or
insulin
Inducible, synthesis induced by
insulin & repressed in diabetes
Level of enzyme is not
affected by fasting or high
CHO diet
Depends on glucose concentration
Act on glucose, fructose and
galactose
Glucose only
10. March 17, 2018
2) Splitting Stage
• The reaction catalysed by aldolase is
the reverse of aldol condensation.
• Although the cleavage of F1,6BP is
energetically unfavourable, rapid
removal of the product drives the
reaction forward.
• Of the two products of the aldolase
reaction, only GAP (or G3P) serves as a
substrate for the next reaction in
glycolysis.
• To prevent the loss of the other three-
carbon unit, triose phosphate isomerase
catalyses the interconversion of DHAP
& G3P. Because of this reaction, the
original molecule of glucose has now
been converted to two molecules of
G3P.
11. March 17, 2018 Dr. Mohamed Z Gad 11
3) Oxidoreduction –
Phosphorylation
Stage• G-3-P dehydrogenase is a tetramer,
each subunit contains 1 binding site
for G3P & another for NAD+
(NAD+
is permanently bound to the enzyme).
• G3P 1,3-BPG 3PG and PEP
Pyruvate are examples of
“substrate–level” phosphorylation.
• 3-PG 2-PG is mediated by an
intermediate [2,3-BPG]. Most cells
have low amounts of 2,3-BPG except
in RBCs, which act as allosteric
modifier of Hb-O2 binding.
• PEP Pyruvate is an “irreversible
reaction” due to free energy loss
associated with tautomerization of
the enol to the more stable keto form.
12. ADP is converted to ATP by the direct
transfer of a phosphoryl group from a high
energy compound.
What is meant by “substrate–
level phosphorylation” ?
13. Why glycolysis under anaerobic
conditions proceed to lactate and
not just stop at pyruvate
formation ?
The reaction of lactate dehydrogenase is essential in
anaerobic glycolysis , as it is the mean for reoxidizing
NADH formed in the G-3-P dehydrogenase step to re-
enter into the glycolysis cycle. In aerobic glycolysis
reoxidation takes place in mitochondria by the
respiratory chain.
14. Overall pathway of Glycolysis & ATP
Formation
Number of ATP generated from
glycolysis
Enzyme Aerobic Anaerobic
Hexokinase -1 ATP -1 ATP
PFK-1 -1 ATP -1 ATP
G-3-P
dehydrog.
+6 ATP ----
Phospho-
glycerate
kinase
+2 ATP +2 ATP
Pyruvate
kinase
+2 ATP +2 ATP
Sum +8 ATP +2 ATP
Dr. Mohamed Z Gad 14
15. March 17, 2018 Dr. Mohamed Z Gad 15
Louis Pasteur, the great 19th century French chemist
and microbiologist, was the first scientist to observe the
following phenomenon. “Cells that can oxidize glucose
completely to CO2 and H2O utilize glucose more rapidly
in the absence of O2 than in its presence”. It would
appear that O2 inhibits glucose consumption. Thus,
another definition for Pasteur effect is: inhibition of
glucose utilization and lactate accumulation by the
initiation of respiration (O2 consumption)… Can you
explain why ?
The reason behind this phenomenon is that complete oxidation of glucose
under aerobic conditions yield much more ATP (~38 ATP) than anaerobic
glycolysis (~2ATP). Thus it is anticipated that the rate of glucose consumption
will be 19-20 times faster under anaerobic condition to meet the metabolic
demand in a way equivalent to aerobic conditions.
16. Regulation of
Glycolysis
March 17, 2018 Dr. Mohamed Z Gad 16
Rate of glycolysis is controlled primarily by
allosteric regulation of the 3 key enzymes
(irreversible steps), hexokinase, PFK-1, and
pyruvate kinase.
Enzyme Activator Inhibitor
Hexokinase AMP, ADP, Pi G-6-P
PFK-1 F-6-P, AMP, F-
2,6-DP (liver
only)
NADH, H+
, citrate,
ATP
Pyruvate
kinase
AMP, F-1,6-DP ATP, acetyl CoA,
phosphorylation
• PFK-1 is the major regulatory
enzyme of glycolysis. In the liver
only, PFK-1 is activated by fructose-
2,6-diphosphate (F-2,6-DP).
• PFK-2, the enzyme that synthesize
the activator F-2,6-DP, is itself a
regulatory enzyme. It is inhibited by
citrate & ATP and by
phosphorylation. The reverse
reaction is catalyzed by fructose-2,6-
diphosphatase(F-2,6-DPase).
• Hormones also regulate glycolysis
e.g., glucagon inhibits glycolysis by
repressing the synthesis of F-2,6-DP.
Insulin promotes glycolysis by
stimulating the synthesis of F-2,6-DP.
18. March 17, 2018 Dr. Mohamed Z Gad 18
•
Comments on Glycolysis
Glycolysis is the only pathway that produce ATP in absence of O2.
The best known inhibitors of the glycolytic pathway include:
2-Deoxyglucose:2-Deoxyglucose: causes inhibition of hexokinase.
Sulfhydryl reagentsSulfhydryl reagents (e.g. Hg-compounds and alkylating agents as
iodoacetate); inhibit glyceraldehydes-3-phosphate dehydrogenase
which has cysteine residue in the active site.
Fluoride: a potent inhibitor of enolase. Thus, fluoride is usually
added to blood samples to inhibit glycolysis before estimation of
blood glucose.
MagnesiumMagnesium:: required for kinase reactions by forming Mg-ATP
complex.
Accumulation of lactate is responsible for muscle fatigue and cramps
observed under heavy exercise (anaerobic glycolysis).
In RBCs, glycolysis is the major source of ATP since RBCs lack
mitochondrial oxidation.
19. Pyruvate dehydrogenase complex (PDC) is a complex of
three enzymes that converts pyruvate into acetyl-CoA by a
process called pyruvate decarboxylation. Acetyl-CoA may
then be used in the citric acid cycle to carry out
cellular respiration, and this complex links the glycolysis
metabolic pathway to the citric acid cycle
24. The source of pyruvate and oxaloacetate for
gluconeogenesis during fasting or carbohydrate
starvation is mainly amino acid catabolism.
Some amino acids are catabolized to pyruvate,
oxaloacetate, or precursors of these.
Muscle proteins may break down to supply amino
acids. These are transported to liver where they are
deaminated and converted to gluconeogenesis
inputs.
Glycerol, derived from hydrolysis of triacylglycerols
in fat cells, is also a significant input to
gluconeogenesis.
24
26. Main sites of gluconeogenesis:
• Major site: Liver.
• Minor site: Kidney.
• Very little:
– Brain.
– Muscle (skeletal and heart).
In liver and kidney it helps to maintain the glucose level
in the blood so that brain and muscle can extract
sufficient glucose from it to meet their metabolic
demands.
26
27. Gluconeogenesis Versus Glycolysis:
7 steps are shared between glycolysis and
gluconeogenesis.
3 essentially irreversible steps shift the equilibrium
far on the side of glycolysis.
Most of the decrease in free energy (consuming
energy) in glycolysis takes place during these 3 steps.
27
29. 29
1. Phosphoenolpyruvate is formed from
pyruvate:
2. Fructose 6-phosphate is formed from fructose 1,6-
bisphosphate:
3. Glucose is formed by hydrolysis of glucose 6-phosphate:
30.
31. HMP Shunt
Hexose Mono Phosphate Shunt = Pentose Phosphate
Pathway = Complete Glucose Oxidation
Function : Production of
For NADPH
Ribose 5P
Site :
In the cytoplasm of all cells except muscle, and
nonlactating mammary gland (low activity)
32. NADPH + H+
is formed from
two separate reactions.
The glucose 6-phosphate DH
(G6PD) reaction is the rate
limiting step and is essentially
irreversible.
Cells have a greater need for
NADPH than ribose 5-
phosphate.
Editor's Notes
Here is the Whole Cycle. All cyclic pathways have to have an acceptor molecule, here oxaloacetic acid (OAA) for the input, here acetyl part that come from pyruvate.
We will do each enzyme separately, but look how it is put together shading the input acetyl carbons so that during this “turn” of the cycle, the CO2 that comes off (circled here in red) do not come from the acetyl carbons, but from OAA (oxaloacetic acid) the acceptor.
The other outputs from the cycle (besides CO2) are energy metabolites: 3 NADHs, 1 FADH2 and a GTP. The GTP is the same worth as an ATP. So as the cycle spins it has all these outputs. CO2 is a metabolic end product and a waste from heterotrophs, but a carbon source of photosynthetic and other autotrophs. The NADHs and FADH2 will be oxidized (in the mitochondria) by the electron transport system, producing the proton motive force to produce ATP (we will do this later in Chapter 19). Now lets look at each CAC enzyme.
This is the biosynthetic output of CAC and reactions just prior to CAC.