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Optimization of Pipetting Parameters for 
a Robotic Liquid Handler 
Kristi Ballard, Chuck Kemmerer, Thorsten Verch 
14 April 2013 
Temple QA/RA DOE Course
Problem Statement 
• Pipetting steps have associated accuracy/bias and 
precision ranges 
• Minimizing bias and %CV is key to analytical method 
performance 
• Factors affecting pipet bias and precision of a robotic 
liquid handler were investigated for improvement 
opportunities 
• Goal: Lowest Bias and Lowest %CV possible
Accuracy/Bias & Precision 
Image: 
http://academics.wellesley.edu 
/Chemistry/Chem105manual/A 
ppendices/uncertainty_analysi 
s.html 
Created By: Adilia James '07 
and Sarah Coutlee '07 
• Bias can be accommodated through calibration 
• Imprecision cannot be adjusted
TECAN Robotic Liquid Handler 
8 Independent syringes to 
aspirate/dispense 
LiHa picks up tips and moves liquid 
from reservoirs into microwell plates 
Dispense into microwell plates: 
Screening: 4 runs / plate 
Confirmation: 2 runs / plate
Artel Measurement System 
• Measurement of a red 
dye in an undiluted blue 
background 
• Calculates delivered 
volume by comparing 
measured concentration 
with expected 
concentration 
• Lambert-Beer: 
Image: 
J Biomol Screen July 12, 2012 , doi: 10.1177/1087057112453433 
c: Concentration 
A: Absorbance (measured) 
e: Extinction Coefficient (known) 
d: Path length (known)
Selected Pipetting Parameters 
Aspirate Speed ↑ 
Dispense Speed ↓ 
Blow-out (Leading Airgap) 
Volume 
Aspirate Delay ↑ 
Dispense Delay ↓ 
Break-off Speed 
Held Constant: 
System Air Gap 
Trailing Air Gap 
Calibration Factors 
Pipet Height in Liquid 
Channels 
Tip Size 
Liquid Type / Viscosity 
(Volume) 
Retract Speed post Aspirate 
Retract Speed post Dispense 
Pre-wet (Conditioning)
Screening DOE 1 
Objectives: 
Comparison of different instruments 
Evaluation of 11 factors
Experimental Design (Half) 
RunOr 
der 
Asp 
vol 
Asp 
spd 
Asp 
del 
• 12+12 Run Plackett-Burman fold-over 
11 Factors 
• 1 Block for robot 
• Second half of the fold-over design 
was run on a separate day 
Asp ret 
spd 
Asp ld 
air 
gap 
Trl air 
gap 
Cond 
vol 
Dis 
spd Dis dly 
Dis ret 
spd 
Dis bk-off 
spd 
1 200 50 50 5 10 10 yes 50 1000 60 20 
2 200 150 50 60 10 0 yes 50 50 5 200 
3 25 50 50 5 0 0 No 50 50 5 20 
4 200 150 1000 5 10 10 No 500 50 5 20 
5 25 150 50 5 0 10 yes 500 50 60 200 
6 25 150 1000 60 0 10 yes 50 1000 5 20 
7 25 50 50 60 10 10 No 500 1000 5 200 
8 25 50 1000 60 10 0 yes 500 50 60 20 
9 200 150 50 60 0 0 No 500 1000 60 20 
10 200 50 1000 5 0 0 yes 500 1000 5 200 
11 200 50 1000 60 0 10 No 50 50 60 200 
12 25 150 1000 5 10 0 No 50 1000 60 200 
• 8 channel replicates (pipets) / run 
3 dispense replicates / channel 
4 robots 
12 runs x 3 replicates x 8 wells x 4 
robots = 1152 data points!
Results 
DOE1 DOE2 Boxplot of Log %Bias 
BBR0479 BBR0508 BBR0509 EVO150 
50 
25 
0 
-25 
-50 
-75 
Robot ID 
% Volume Bias 
Boxplot of % Volume Bias 
• Difference in the mean bias between the robots 
depends on run 
• Subset of instruments was used as representative 
• Higher variability observed in one instrument 
• Blocking by instrument was not used downstream in 
order to maintain a “worst case” scenario 
Data were averaged across instruments 
BBR0508 BBR0509 
BBR0508 BBR0509 
1.6 
1.4 
1.2 
1.0 
0.8 
0.6 
0.4 
0.2 
0.0 
Robot ID 
Log %CV 
Boxplot of Log %CV 
1.75 
1.50 
1.25 
1.00 
0.75 
0.50 
Robot ID 
Log %Bias
Data Transformation 
Residual Plots for Absolute % volume bias 
Normal Probability Plot Versus Fits 
-20 0 20 40 60 
Histogram Versus Order 
900 
800 
700 
600 
500 
400 
300 
200 
100 
• Log transformed data distribution is closer to normal 
• Log data used for all models 
99.99 
99 
90 
50 
10 
1 
0.01 
Residual 
Percent 
7 8 9 10 
60 
45 
30 
15 
0 
Fitted Value 
Residual 
-10 0 10 20 30 40 50 
240 
180 
120 
60 
0 
Residual 
Frequency 
1100 
1000 
1 
60 
45 
30 
15 
0 
Observation Order 
Residual
Results, Main Factor Model, Pareto 
Log % Bias Log % CV 
DOE1 with Volume, Pareto, Main Factors Only 
(response is Log %Bias, Alpha = 0.05) 
Conditioning 
Target Volume (uL) 
Retract Speed 
Disp Speed 
Disp Delay 
Dispense Trailing Air Gap 
Asp lead/Disp Trail Air Gap 
Break-off Speed 
Asp Retract Speed 
Asp delay 
Asp Speed 
2.030 
0 1 2 3 4 
DOE1 with Volume, Pareto, Main Factors Only 
(response is Log %CV, Alpha = 0.05) 
Target Volume (uL) 
Asp delay 
Conditioning 
Asp lead/Disp Trail Air Gap 
Break-off Speed 
Asp Retract Speed 
Dispense Trailing Air Gap 
Asp Speed 
Disp Speed 
Retract Speed 
• Aspiration Volume has the largest effect for %CV 
2.030 
→ Not practical to improve process by volume. Required to pipette 
multiple volumes. *Use the small volume for future runs* 
• Conditioning has the largest effect for %Bias 
→ Do not condition during future runs. 
Term 
Standardized Effect 
Disp Delay 
0 1 2 3 4 5 6 7 
Term 
Standardized Effect
Results, Effects 
• Positive conditioning 
mean high bias and high 
%CV 
→ Do not condition 
during future runs. 
• Blocked for volume 
• Main effects only
Screening DOE 2 
Objectives: 
Confirmation of DOE1 
Improved Experimental Design 
Remove Run Block
Experimental Design (Half) 
• 12+12 Run Plackett-Burman fold-over 
9 Factors 
• Low volume only (20 mL) 
• 8 channel replicates (pipets) / run 
3 dispense replicates / channel 
2 robots 
24 runs x 3 replicates x 8 wells x 2 
robots = 1152 data points! 
Run Asp Spd Asp del 
Asp Retr 
Spd 
Asp ld/Dsp 
Trl Air Gap Cond Disp Spd Disp Del Ret Spd 
BkOff 
Spd 
1 50 1000 60 10 no 50 50 60 20 
2 250 1000 60 10 no 500 1000 5 20 
3 250 50 5 10 no 50 1000 60 200 
4 50 50 60 10 yes 50 1000 5 200 
5 50 50 60 0 yes 500 1000 60 20 
6 250 1000 60 0 yes 50 50 5 200 
7 250 50 60 0 no 500 50 60 200 
8 50 1000 5 10 yes 500 50 60 200 
9 50 1000 5 0 no 500 1000 5 200 
10 50 50 5 0 no 50 50 5 20 
11 250 1000 5 0 yes 50 1000 60 20 
12 250 50 5 10 yes 500 50 5 20
Results, Main Effects Model, Pareto 
Log % Bias Log % CV 
Pareto Chart of the Standardized Effects 
(response is Log %CV, Alpha = 0.05) 
Conditioning 
Disp Speed 
Asp lead/Disp Trail Air Gap 
Break-off Speed 
Asp delay 
Retract Speed 
Asp Speed 
Disp Delay 
Asp Retract Speed 
2.024 
0.0 0.5 1.0 1.5 2.0 2.5 3.0 
Term 
Standardized Effect 
Conditioning 
Disp Speed 
Asp Speed 
Asp lead/Disp Trail Air Gap 
Retract Speed 
Asp Retract Speed 
Break-off Speed 
Asp delay 
Disp Delay 
0.0 0.5 1.0 1.5 2.0 
• Conditioning & Dispense Speed have the largest effect for both responses 
Term 
Standardized Effect 
2.024 
Pareto Chart of the Standardized Effects 
(response is Log %Bias, Alpha = 0.05)
Results, Second Order Model, Pareto 
Log % Bias Log % CV 
E 
AG 
F 
D 
BE 
AF 
AJ 
BC 
BF 
AH 
AE 
J 
B 
AC 
AD 
H 
A 
AB 
G 
E 
F 
AG 
BE 
AJ 
AF 
AD 
BC 
A 
D 
AH 
H 
C 
J 
BF 
AE 
B 
G 
F actor Name 
• Conditioning has the largest effect for both responses 
• Many interactions 
→ Follow up with a resolution V design 
C 
2.052 
0.0 0.5 1.0 1.5 2.0 2.5 3.0 
Term 
Standardized Effect 
F actor Name 
A A sp Speed 
B A sp delay 
C A sp Retract Speed 
D A sp lead/Disp Trail A ir Gap 
E C onditioning 
F Disp Speed 
G Disp Delay 
H Retract Speed 
J Break-off Speed 
DOE2, Pareto 
(response is Log %CV, Alpha = 0.05) 
AC 
AB 
0.0 0.5 1.0 1.5 2.0 2.5 
Term 
Standardized Effect 
2.052 
A A sp Speed 
B A sp delay 
C A sp Retract Speed 
D A sp lead/Disp Trail A ir Gap 
E C onditioning 
F Disp Speed 
G Disp Delay 
H Retract Speed 
J Break-off Speed 
DOE2, Pareto 
(response is Log %Bias, Alpha = 0.05)
Main Effects 
Main Effects Plot for Log %CV 
50 250 
Main Effects Plot for Log %Bias 
Data Means 
50 1000 5 60 
no y es 50 500 
5 60 20 200 
0.9 
0.8 
0.7 
Data Means 
50 1000 5 60 
0 10 
0.9 
0.8 
0.7 
no y es 50 500 
50 1000 
0.9 
0.8 
0.7 
5 60 20 200 
A sp Speed 
Mean 
A sp delay A sp Retract Speed 
A sp lead/Disp Trail A ir Gap C onditioning Disp Speed 
Disp Delay Retract Speed Break-off Speed 
A sp Speed 
50 250 
1.1 
1.0 
0.9 
0 10 
1.1 
1.0 
0.9 
50 1000 
1.1 
1.0 
0.9 
Largest Effects 
(Minimize Bias and %CV) 
• Trailing Airgap (high) 
• Conditioning (low) 
• Dispense Speed (high) 
Mean 
A sp delay A sp Retract Speed 
A sp lead/Disp Trail A ir Gap C onditioning Disp Speed 
Disp Delay Retract Speed Break-off Speed
Interaction 
Effects 
Asp delay 
Conditioning 
50 1000 no yes 50 1000 20 200 
1.0 
0.8 
01..06 
0.8 
01..06 
0.8 
01..06 
0.8 
0.6 
Asp Speed 
Asp delay 
Conditioning 
Disp Delay 
Break-off Speed 
Asp 
Speed 
50 
250 
Asp delay 
50 
1000 
Conditioning 
no 
yes 
Disp 
Delay 
50 
1000 
Interaction Plot for Log %CV 
Data Means 
50 1000 no yes 50 1000 20 200 
Largest Effects 
(Minimize Bias and %CV) 
• Trailing Airgap (high) 
• Conditioning (low) 
• Dispense Speed (high) 
1.10 
0.95 
0.80 
1.10 
0.95 
0.80 
1.10 
0.95 
0.80 
1.10 
0.95 
0.80 
Asp Speed 
Asp delay 
Conditioning 
Disp Delay 
Break-off Speed 
Asp 
Speed 
50 
250 
50 
1000 
no 
yes 
Disp 
Delay 
50 
1000 
Interaction Plot for Log %Bias 
Data Means 
Asp 
Speed 
Asp 
Delay 
Conditioning 
Disp 
Delay 
Break-off 
Speed 
Asp 
Speed 
Asp 
Delay 
Conditioning 
Disp 
Delay 
Break-off 
Speed
Effect Comparison – DOE1 vs. DOE2 
Factor 
% Bias 
DOE1 
% Bias 
DOE2 
% CV 
DOE1 
% CV 
DOE2 
Aspiration Speed 0 0 0 0 
Aspiration Delay 0 0 (+) 0 
Aspiration Retract 
Speed 0 0 (+) 0 
Asp lead/Disp Trail Air 
Gap 0 0 (-) (-) 
Conditioning (+) (+) (+) (+) 
Dispense Speed 0 (-) 0 (-) 
Dispense Delay 0 0 0 0 
Retract Speed (+) 0 0 0 
Break-off Speed 0 0 (-) 0
Confirmation Run
Set-Up 
• 3 Liquid Classes: 
1. Best conditions from DOE runs 
2. Best conditions predicted by effects model 
3. Original settings 
• 2 calibration modifications: 
1. Original 
2. Reduced off-set 
• 2 Volumes: 
1. 20 mL 
2. 100 mL 
• 6 dispense replicates / channel 
• 8 channels 
• 6 * 8 = 24 data points per liquid class & volume
Results (Total Averaged Data) 
% Bias % CV 
• No improvement in %Bias 
• Much tighter %CV for settings predicted by the model 
• Single outlier in original liquid class 
No solution was added to the wells (robotic failure?)
Results (Outlier Excluded) 
% Bias % CV 
DOE Data DOE Data-Offset DOE Prediction DOE Prediction-Offset Old 
10.0 
7.5 
5.0 
2.5 
0.0 
-2.5 
-5.0 
Liquid Class 
Average % Bias 
Boxplot of Average % Bias, outlier excluded 
DOE Data DOE Data-Offset DOE Prediction DOE Prediction-Offset Old 
700 
600 
500 
400 
300 
200 
100 
0 
-100 
-200 
Liquid Class 
Average %CV of bias 
Boxplot of Average %CV of bias, outlier excluded 
• No improvement in %Bias 
• Much tighter %CV for settings predicted by the model
Conclusions 
- Strategy - 
• No significant difference between robots (?) 
Liquid classes can be transferred 
• Optimization at 20 mL can be transferred to larger volumes 
• Bias may be addressed with calibration 
Liquid class can be optimized for precision 
• Placket-Burman design is efficient to screen a number of factors 
and reduce the total. Fold-over design helps understanding main 
factors 
• Even with a limited model, improvements can be achieved 
• Numerous interactions require a fractional factorial design for 
complete modeling
Conclusions 
- DOE Analysis - 
• Response may need log-transformation 
• Bias and Precision are driven by different factors with some 
overlapp 
• Most factors interact. Few stand-alone main effects. 
• Confounded models may not adequately predict 
performance 
• Blocking for factors that are not going to be optimized 
further can enhance analysis of the remaining factors
Path Forward 
• Characterization DOE and eventually a Response Surface 
DOE with reduced number of factors 
• Repeat the study for a protein solution (2-5% BSA) 
• Improve experimental design based on experience with this 
study: 
– No conditioning 
– Focus on lowest volume 
– Consider a fractional factorial design with less replication for screening
Back-ups
DOE1 – 
99 
90 
50 
DOE1, Residual Plots for Log %Bias 
Normal Probability Plot Versus Fits 
-0.50 -0.25 0.00 0.25 0.50 Residual Plots 
10 
1 
Residual 
Percent 
0.4 0.6 0.8 1.0 1.2 
0.50 
0.25 
0.00 
-0.25 
-0.50 
Fitted Value 
Residual 
Histogram Versus Order 
-0.4 -0.2 0.0 0.2 0.4 
24 
18 
12 
6 
0 
Residual 
Frequency 
1 5 10 15 20 25 30 35 40 45 
0.50 
0.25 
0.00 
-0.25 
-0.50 
Observation Order 
Residual
DOE2 – 
DOE2, Residual Plots for Log %CV 
Normal Probability Plot Versus Fits 
-0.50 -0.25 0.00 0.25 0.50 Residual Plots 
99 
90 
50 
10 
1 
Residual 
Percent 
0.3 0.6 0.9 1.2 
0.50 
0.25 
0.00 
-0.25 
-0.50 
Fitted Value 
Residual 
Histogram Versus Order 
-0.6 -0.4 -0.2 0.0 0.2 0.4 
8 
6 
4 
2 
0 
Residual 
Frequency 
1 5 10 15 20 25 30 35 40 45 
0.50 
0.25 
0.00 
-0.25 
-0.50 
Observation Order 
Residual 
DOE2, Residual Plots for Log %Bias 
Normal Probability Plot Versus Fits 
-0.50 -0.25 0.00 0.25 0.50 
99 
90 
50 
10 
1 
Residual 
Percent 
0.6 0.8 1.0 1.2 1.4 
0.50 
0.25 
0.00 
-0.25 
-0.50 
Fitted Value 
Residual 
Histogram Versus Order 
-0.4 -0.2 0.0 0.2 0.4 
12 
9 
6 
3 
0 
Residual 
Frequency 
1 5 10 15 20 25 30 35 40 45 
0.50 
0.25 
0.00 
-0.25 
-0.50 
Observation Order 
Residual
Comparison 
of DOE1 & 2, 
Main Effects 
DOE1, Main Effects Plot for Log %Bias 
50 150 
1.0 
0.9 
0.8 
Data Means 
50 1000 5 60 0 10 
0 10 
1.0 
0.9 
0.8 
no y es 50 500 50 1000 
5 60 
1.0 
0.9 
0.8 
20 200 
A sp Speed 
Mean 
A sp delay A sp Retract Speed A sp lead/Disp Trail A ir Gap 
Dispense Trailing A ir Gap C onditioning Disp Speed Disp Delay 
Retract Speed Break-off Speed 
DOE2, Main Effects Plot for Log %Bias 
50 250 
1.1 
1.0 
0.9 
Data Means 
50 1000 5 60 
0 10 
1.1 
1.0 
0.9 
no y es 50 500 
50 1000 
1.1 
1.0 
0.9 
5 60 20 200 
A sp Speed 
Mean 
A sp delay A sp Retract Speed 
A sp lead/Disp Trail A ir Gap C onditioning Disp Speed 
Disp Delay Retract Speed Break-off Speed
Comparison 
of DOE1 & 2, 
Main Effects 
DOE1, Main Effects Plot for Log %CV 
50 150 
0.5 
0.4 
0.3 
Data Means 
50 1000 5 60 0 10 
0 10 
0.5 
0.4 
0.3 
no y es 50 500 50 1000 
5 60 
0.5 
0.4 
0.3 
20 200 
A sp Speed 
Mean 
A sp delay A sp Retract Speed A sp lead/Disp Trail A ir Gap 
Dispense Trailing A ir Gap C onditioning Disp Speed Disp Delay 
Retract Speed Break-off Speed 
DOE2, Main Effects Plot for Log %CV 
50 250 
0.9 
0.8 
0.7 
Data Means 
50 1000 5 60 
0 10 
0.9 
0.8 
0.7 
no y es 50 500 
50 1000 
0.9 
0.8 
0.7 
5 60 20 200 
A sp Speed 
Mean 
A sp delay A sp Retract Speed 
A sp lead/Disp Trail A ir Gap C onditioning Disp Speed 
Disp Delay Retract Speed Break-off Speed
DOE1, Results, Second Order Factor Model 
2.064 
F actor Name 
A Target V olume (uL) 
B A sp Speed 
C A sp delay 
D A sp Retract Speed 
E A sp lead/Disp Trail A ir Gap 
F Dispense Trailing A ir Gap 
G C onditioning 
H Disp Speed 
J Disp Delay 
A 
C 
G 
AD 
AG 
E 
L 
D 
F 
B 
H 
AF 
AK 
AJ 
BC 
AC 
AL 
K 
AE 
J 
AH 
2.064 
• Aspiration Volume has the largest effect for %CV 
F actor Name 
A Target V olume (uL) 
B A sp Speed 
C A sp delay 
D A sp Retract Speed 
E A sp lead/Disp Trail A ir Gap 
F Dispense Trailing A ir Gap 
G C onditioning 
H Disp Speed 
J Disp Delay 
→ Not practical to improve process by volume. Required to pipette 
multiple volumes. *Use the small volume for future runs* 
• Conditioning has the largest effect for %Bias 
→ Do not condition during future runs. 
G 
A 
AH 
AE 
AK 
AF 
AG 
BC 
K 
AD 
AJ 
H 
J 
AL 
F 
E 
L 
D 
AB 
C 
B 
AC 
0 1 2 3 4 
Term 
Standardized Effect 
K Retract Speed 
L Break-off Speed 
DOE1 with Volume, Pareto 
(response is Log %Bias, Alpha = 0.05) 
AB 
0 1 2 3 4 5 6 7 
Term 
Standardized Effect 
K Retract Speed 
L Break-off Speed 
DOE1 with Volume, Pareto 
(response is Log %CV, Alpha = 0.05)
DOE2 – ANOVA of log %CV 
Analysis of Variance for Log %CV (coded units) 
Source DF Seq SS Adj SS Adj MS F P 
Main Effects 9 2.15259 2.15259 0.23918 1.73 0.116 
Asp Speed 1 0.00360 0.00360 0.00360 0.03 0.873 
Asp delay 1 0.02056 0.02056 0.02056 0.15 0.702 
Asp Retract Speed 1 0.00006 0.00006 0.00006 0.00 0.983 
Asp lead/Disp Trail Air Gap 1 0.46353 0.46353 0.46353 3.35 0.075 
Conditioning 1 1.01453 1.01453 1.01453 7.34 0.010 
Disp Speed 1 0.61547 0.61547 0.61547 4.45 0.042 
Disp Delay 1 0.00050 0.00050 0.00050 0.00 0.952 
Retract Speed 1 0.00440 0.00440 0.00440 0.03 0.859 
Break-off Speed 1 0.02993 0.02993 0.02993 0.22 0.644 
Residual Error 38 5.25335 5.25335 0.13825 
Lack of Fit 14 2.57768 2.57768 0.18412 1.65 0.136 
Pure Error 24 2.67567 2.67567 0.11149 
Total 47 7.40594 
Unusual Observations for Log %CV 
Obs StdOrder Log %CV Fit SE Fit Residual St Resid 
40 40 1.33029 0.59572 0.16971 0.73456 2.22R 
R denotes an observation with a large standardized residual. 
Estimated Coefficients for Log %CV using data in uncoded units 
Term Coef 
Constant 1.03053 
Asp Speed 0.000086644 
Asp delay -4.35743E-05 
Asp Retract Speed -0.00004191 
Asp lead/Disp Trail Air Gap -0.0196538 
Conditioning 0.145383 
Disp Speed -5.03271E-04 
Disp Delay -6.78313E-06 
Retract Speed -0.00034799 
Break-off Speed 0.000277455 
Factorial Fit: Log %CV versus Asp Speed, Asp delay, ... 
Estimated Effects and Coefficients for Log %CV (coded units) 
Term Effect Coef SE Coef T P 
Constant 0.7983 0.05367 14.87 0.000 
Asp Speed 0.0173 0.0087 0.05367 0.16 0.873 
Asp delay -0.0414 -0.0207 0.05367 -0.39 0.702 
Asp Retract Speed -0.0023 -0.0012 0.05367 -0.02 0.983 
Asp lead/Disp Trail Air Gap -0.1965 -0.0983 0.05367 -1.83 0.075 
Conditioning 0.2908 0.1454 0.05367 2.71 0.010 
Disp Speed -0.2265 -0.1132 0.05367 -2.11 0.042 
Disp Delay -0.0064 -0.0032 0.05367 -0.06 0.952 
Retract Speed -0.0191 -0.0096 0.05367 -0.18 0.859 
Break-off Speed 0.0499 0.0250 0.05367 0.47 0.644 
S = 0.371815 PRESS = 8.38208 
R-Sq = 29.07% R-Sq(pred) = 0.00% R-Sq(adj) = 12.27%
DOE2 – ANOVA of log %Bias 
Analysis of Variance for Log %Bias (coded units) 
Source DF Seq SS Adj SS Adj MS F P 
Main Effects 9 1.23678 1.23678 0.137420 1.22 0.312 
Asp Speed 1 0.08264 0.08264 0.082638 0.73 0.397 
Asp delay 1 0.00415 0.00415 0.004153 0.04 0.849 
Asp Retract Speed 1 0.02543 0.02543 0.025431 0.23 0.637 
Asp lead/Disp Trail Air Gap 1 0.06964 0.06964 0.069644 0.62 0.436 
Conditioning 1 0.49750 0.49750 0.497495 4.42 0.042 
Disp Speed 1 0.49657 0.49657 0.496573 4.41 0.042 
Disp Delay 1 0.00262 0.00262 0.002625 0.02 0.879 
Retract Speed 1 0.04862 0.04862 0.048619 0.43 0.515 
Break-off Speed 1 0.00961 0.00961 0.009605 0.09 0.772 
Residual Error 38 4.27884 4.27884 0.112601 
Lack of Fit 14 1.78955 1.78955 0.127825 1.23 0.316 
Pure Error 24 2.48929 2.48929 0.103721 
Total 47 5.51562 
Unusual Observations for Log %Bias 
Obs StdOrder Log %Bias Fit SE Fit Residual St Resid 
40 40 1.53174 0.85781 0.15316 0.67393 2.26R 
44 44 1.74424 1.07701 0.15316 0.66723 2.23R 
48 48 1.72926 1.01078 0.15316 0.71848 2.41R 
R denotes an observation with a large standardized residual. 
Estimated Coefficients for Log %Bias using data in uncoded units 
Term Coef 
Constant 1.03024 
Asp Speed 0.000414925 
Asp delay -1.95826E-05 
Asp Retract Speed 0.00083700 
Asp lead/Disp Trail Air Gap -0.00761819 
Conditioning 0.101806 
Disp Speed -4.52052E-04 
Disp Delay 0.000015568 
Retract Speed 0.00115731 
Break-off Speed -1.57179E-04 
Factorial Fit: Log %Bias versus Asp Speed, Asp delay, ... 
Estimated Effects and Coefficients for Log %Bias (coded units) 
Term Effect Coef SE Coef T P 
Constant 0.9755 0.04843 20.14 0.000 
Asp Speed 0.0830 0.0415 0.04843 0.86 0.397 
Asp delay -0.0186 -0.0093 0.04843 -0.19 0.849 
Asp Retract Speed 0.0460 0.0230 0.04843 0.48 0.637 
Asp lead/Disp Trail Air Gap -0.0762 -0.0381 0.04843 -0.79 0.436 
Conditioning 0.2036 0.1018 0.04843 2.10 0.042 
Disp Speed -0.2034 -0.1017 0.04843 -2.10 0.042 
Disp Delay 0.0148 0.0074 0.04843 0.15 0.879 
Retract Speed 0.0637 0.0318 0.04843 0.66 0.515 
Break-off Speed -0.0283 -0.0141 0.04843 -0.29 0.772 
S = 0.335561 PRESS = 6.82718 
R-Sq = 22.42% R-Sq(pred) = 0.00% R-Sq(adj) = 4.05%
% Bias Interaction Plots: DOE1 vs. DOE 2 
DOE1 DOE2 
50 1000 no yes 50 1000 20 200 
1.10 
0.95 
0.80 
1.10 
0.95 
0.80 
1.10 
0.95 
0.80 
1.10 
0.95 
0.80 
Asp Speed 
Asp delay 
Conditioning 
Disp Delay 
Break-off Speed 
Asp 
Speed 
50 
250 
Asp delay 
50 
1000 
Conditioning 
no 
yes 
Disp 
Delay 
50 
1000 
Interaction Plot for Log %Bias 
Data Means 
50 1000 No yes 50 1000 20 200 
6 
0 
-6 
6 
0 
-6 
6 
0 
-6 
6 
0 
-6 
aspiration speed* 
aspiration delay 
conditioning volume** 
dispense delay 
Dispense Break-off Speed*** 
aspiration 
speed* 
50 
150 
aspiration 
delay 
50 
1000 
conditioning 
volume** 
No 
yes 
dispense 
delay 
50 
1000 
Interaction Plot for Average Run Bias (%) 
Data Means 
• 2nd Level interactions are confounded in the Plackett Burman Design 
• Results from both DOE studies indicate interactions are significant 
• A screening study with clear 2-level interactions is needed to learn more 
• Mostly similar effects. Differences may be due to: 
DOE 1 run with volume as a factor 
DOE 2 had a reduced number of factors (9) from DOE (11)
% Bias Interaction Plots: DOE1 vs. DOE 2 
DOE1 DOE2 
50 1000 No yes 50 1000 20 200 
102 
96 
90 
102 
96 
90 
102 
96 
90 
102 
96 
90 
aspiration 
speed* 
aspiration 
delay 
conditioning 
volume** 
dispense 
delay 
• 2nd Level interactions are confounded in the Plackett Burman Design 
• Results from both DOE studies indicate interactions are significant 
• A screening study with clear 2-level interactions is needed to learn more 
• Mostly similar effects. Differences may be due to: 
DOE 1 run with volume as a factor 
DOE 2 had a reduced number of factors (9) from DOE (11) 
aspiration speed* 
aspiration delay 
conditioning volume** 
dispense delay 
Dispense Break-off Speed*** 
50 
150 
50 
1000 
No 
yes 
50 
1000 
Interaction Plot for Average Run Accuracy (%) 
Data Means 
50 1000 no yes 50 1000 20 200 
1.0 
0.8 
01..06 
0.8 
01..06 
0.8 
01..06 
0.8 
0.6 
Asp Speed 
Asp delay 
Conditioning 
Disp Delay 
Break-off Speed 
Asp 
Speed 
50 
250 
Asp delay 
50 
1000 
Conditioning 
no 
yes 
Disp 
Delay 
50 
1000 
Interaction Plot for Log %CV 
Data Means

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Optimization of Pipetting Parameters for a Robotic Liquid Handler

  • 1. Optimization of Pipetting Parameters for a Robotic Liquid Handler Kristi Ballard, Chuck Kemmerer, Thorsten Verch 14 April 2013 Temple QA/RA DOE Course
  • 2. Problem Statement • Pipetting steps have associated accuracy/bias and precision ranges • Minimizing bias and %CV is key to analytical method performance • Factors affecting pipet bias and precision of a robotic liquid handler were investigated for improvement opportunities • Goal: Lowest Bias and Lowest %CV possible
  • 3. Accuracy/Bias & Precision Image: http://academics.wellesley.edu /Chemistry/Chem105manual/A ppendices/uncertainty_analysi s.html Created By: Adilia James '07 and Sarah Coutlee '07 • Bias can be accommodated through calibration • Imprecision cannot be adjusted
  • 4. TECAN Robotic Liquid Handler 8 Independent syringes to aspirate/dispense LiHa picks up tips and moves liquid from reservoirs into microwell plates Dispense into microwell plates: Screening: 4 runs / plate Confirmation: 2 runs / plate
  • 5. Artel Measurement System • Measurement of a red dye in an undiluted blue background • Calculates delivered volume by comparing measured concentration with expected concentration • Lambert-Beer: Image: J Biomol Screen July 12, 2012 , doi: 10.1177/1087057112453433 c: Concentration A: Absorbance (measured) e: Extinction Coefficient (known) d: Path length (known)
  • 6. Selected Pipetting Parameters Aspirate Speed ↑ Dispense Speed ↓ Blow-out (Leading Airgap) Volume Aspirate Delay ↑ Dispense Delay ↓ Break-off Speed Held Constant: System Air Gap Trailing Air Gap Calibration Factors Pipet Height in Liquid Channels Tip Size Liquid Type / Viscosity (Volume) Retract Speed post Aspirate Retract Speed post Dispense Pre-wet (Conditioning)
  • 7. Screening DOE 1 Objectives: Comparison of different instruments Evaluation of 11 factors
  • 8. Experimental Design (Half) RunOr der Asp vol Asp spd Asp del • 12+12 Run Plackett-Burman fold-over 11 Factors • 1 Block for robot • Second half of the fold-over design was run on a separate day Asp ret spd Asp ld air gap Trl air gap Cond vol Dis spd Dis dly Dis ret spd Dis bk-off spd 1 200 50 50 5 10 10 yes 50 1000 60 20 2 200 150 50 60 10 0 yes 50 50 5 200 3 25 50 50 5 0 0 No 50 50 5 20 4 200 150 1000 5 10 10 No 500 50 5 20 5 25 150 50 5 0 10 yes 500 50 60 200 6 25 150 1000 60 0 10 yes 50 1000 5 20 7 25 50 50 60 10 10 No 500 1000 5 200 8 25 50 1000 60 10 0 yes 500 50 60 20 9 200 150 50 60 0 0 No 500 1000 60 20 10 200 50 1000 5 0 0 yes 500 1000 5 200 11 200 50 1000 60 0 10 No 50 50 60 200 12 25 150 1000 5 10 0 No 50 1000 60 200 • 8 channel replicates (pipets) / run 3 dispense replicates / channel 4 robots 12 runs x 3 replicates x 8 wells x 4 robots = 1152 data points!
  • 9. Results DOE1 DOE2 Boxplot of Log %Bias BBR0479 BBR0508 BBR0509 EVO150 50 25 0 -25 -50 -75 Robot ID % Volume Bias Boxplot of % Volume Bias • Difference in the mean bias between the robots depends on run • Subset of instruments was used as representative • Higher variability observed in one instrument • Blocking by instrument was not used downstream in order to maintain a “worst case” scenario Data were averaged across instruments BBR0508 BBR0509 BBR0508 BBR0509 1.6 1.4 1.2 1.0 0.8 0.6 0.4 0.2 0.0 Robot ID Log %CV Boxplot of Log %CV 1.75 1.50 1.25 1.00 0.75 0.50 Robot ID Log %Bias
  • 10. Data Transformation Residual Plots for Absolute % volume bias Normal Probability Plot Versus Fits -20 0 20 40 60 Histogram Versus Order 900 800 700 600 500 400 300 200 100 • Log transformed data distribution is closer to normal • Log data used for all models 99.99 99 90 50 10 1 0.01 Residual Percent 7 8 9 10 60 45 30 15 0 Fitted Value Residual -10 0 10 20 30 40 50 240 180 120 60 0 Residual Frequency 1100 1000 1 60 45 30 15 0 Observation Order Residual
  • 11. Results, Main Factor Model, Pareto Log % Bias Log % CV DOE1 with Volume, Pareto, Main Factors Only (response is Log %Bias, Alpha = 0.05) Conditioning Target Volume (uL) Retract Speed Disp Speed Disp Delay Dispense Trailing Air Gap Asp lead/Disp Trail Air Gap Break-off Speed Asp Retract Speed Asp delay Asp Speed 2.030 0 1 2 3 4 DOE1 with Volume, Pareto, Main Factors Only (response is Log %CV, Alpha = 0.05) Target Volume (uL) Asp delay Conditioning Asp lead/Disp Trail Air Gap Break-off Speed Asp Retract Speed Dispense Trailing Air Gap Asp Speed Disp Speed Retract Speed • Aspiration Volume has the largest effect for %CV 2.030 → Not practical to improve process by volume. Required to pipette multiple volumes. *Use the small volume for future runs* • Conditioning has the largest effect for %Bias → Do not condition during future runs. Term Standardized Effect Disp Delay 0 1 2 3 4 5 6 7 Term Standardized Effect
  • 12. Results, Effects • Positive conditioning mean high bias and high %CV → Do not condition during future runs. • Blocked for volume • Main effects only
  • 13. Screening DOE 2 Objectives: Confirmation of DOE1 Improved Experimental Design Remove Run Block
  • 14. Experimental Design (Half) • 12+12 Run Plackett-Burman fold-over 9 Factors • Low volume only (20 mL) • 8 channel replicates (pipets) / run 3 dispense replicates / channel 2 robots 24 runs x 3 replicates x 8 wells x 2 robots = 1152 data points! Run Asp Spd Asp del Asp Retr Spd Asp ld/Dsp Trl Air Gap Cond Disp Spd Disp Del Ret Spd BkOff Spd 1 50 1000 60 10 no 50 50 60 20 2 250 1000 60 10 no 500 1000 5 20 3 250 50 5 10 no 50 1000 60 200 4 50 50 60 10 yes 50 1000 5 200 5 50 50 60 0 yes 500 1000 60 20 6 250 1000 60 0 yes 50 50 5 200 7 250 50 60 0 no 500 50 60 200 8 50 1000 5 10 yes 500 50 60 200 9 50 1000 5 0 no 500 1000 5 200 10 50 50 5 0 no 50 50 5 20 11 250 1000 5 0 yes 50 1000 60 20 12 250 50 5 10 yes 500 50 5 20
  • 15. Results, Main Effects Model, Pareto Log % Bias Log % CV Pareto Chart of the Standardized Effects (response is Log %CV, Alpha = 0.05) Conditioning Disp Speed Asp lead/Disp Trail Air Gap Break-off Speed Asp delay Retract Speed Asp Speed Disp Delay Asp Retract Speed 2.024 0.0 0.5 1.0 1.5 2.0 2.5 3.0 Term Standardized Effect Conditioning Disp Speed Asp Speed Asp lead/Disp Trail Air Gap Retract Speed Asp Retract Speed Break-off Speed Asp delay Disp Delay 0.0 0.5 1.0 1.5 2.0 • Conditioning & Dispense Speed have the largest effect for both responses Term Standardized Effect 2.024 Pareto Chart of the Standardized Effects (response is Log %Bias, Alpha = 0.05)
  • 16. Results, Second Order Model, Pareto Log % Bias Log % CV E AG F D BE AF AJ BC BF AH AE J B AC AD H A AB G E F AG BE AJ AF AD BC A D AH H C J BF AE B G F actor Name • Conditioning has the largest effect for both responses • Many interactions → Follow up with a resolution V design C 2.052 0.0 0.5 1.0 1.5 2.0 2.5 3.0 Term Standardized Effect F actor Name A A sp Speed B A sp delay C A sp Retract Speed D A sp lead/Disp Trail A ir Gap E C onditioning F Disp Speed G Disp Delay H Retract Speed J Break-off Speed DOE2, Pareto (response is Log %CV, Alpha = 0.05) AC AB 0.0 0.5 1.0 1.5 2.0 2.5 Term Standardized Effect 2.052 A A sp Speed B A sp delay C A sp Retract Speed D A sp lead/Disp Trail A ir Gap E C onditioning F Disp Speed G Disp Delay H Retract Speed J Break-off Speed DOE2, Pareto (response is Log %Bias, Alpha = 0.05)
  • 17. Main Effects Main Effects Plot for Log %CV 50 250 Main Effects Plot for Log %Bias Data Means 50 1000 5 60 no y es 50 500 5 60 20 200 0.9 0.8 0.7 Data Means 50 1000 5 60 0 10 0.9 0.8 0.7 no y es 50 500 50 1000 0.9 0.8 0.7 5 60 20 200 A sp Speed Mean A sp delay A sp Retract Speed A sp lead/Disp Trail A ir Gap C onditioning Disp Speed Disp Delay Retract Speed Break-off Speed A sp Speed 50 250 1.1 1.0 0.9 0 10 1.1 1.0 0.9 50 1000 1.1 1.0 0.9 Largest Effects (Minimize Bias and %CV) • Trailing Airgap (high) • Conditioning (low) • Dispense Speed (high) Mean A sp delay A sp Retract Speed A sp lead/Disp Trail A ir Gap C onditioning Disp Speed Disp Delay Retract Speed Break-off Speed
  • 18. Interaction Effects Asp delay Conditioning 50 1000 no yes 50 1000 20 200 1.0 0.8 01..06 0.8 01..06 0.8 01..06 0.8 0.6 Asp Speed Asp delay Conditioning Disp Delay Break-off Speed Asp Speed 50 250 Asp delay 50 1000 Conditioning no yes Disp Delay 50 1000 Interaction Plot for Log %CV Data Means 50 1000 no yes 50 1000 20 200 Largest Effects (Minimize Bias and %CV) • Trailing Airgap (high) • Conditioning (low) • Dispense Speed (high) 1.10 0.95 0.80 1.10 0.95 0.80 1.10 0.95 0.80 1.10 0.95 0.80 Asp Speed Asp delay Conditioning Disp Delay Break-off Speed Asp Speed 50 250 50 1000 no yes Disp Delay 50 1000 Interaction Plot for Log %Bias Data Means Asp Speed Asp Delay Conditioning Disp Delay Break-off Speed Asp Speed Asp Delay Conditioning Disp Delay Break-off Speed
  • 19. Effect Comparison – DOE1 vs. DOE2 Factor % Bias DOE1 % Bias DOE2 % CV DOE1 % CV DOE2 Aspiration Speed 0 0 0 0 Aspiration Delay 0 0 (+) 0 Aspiration Retract Speed 0 0 (+) 0 Asp lead/Disp Trail Air Gap 0 0 (-) (-) Conditioning (+) (+) (+) (+) Dispense Speed 0 (-) 0 (-) Dispense Delay 0 0 0 0 Retract Speed (+) 0 0 0 Break-off Speed 0 0 (-) 0
  • 21. Set-Up • 3 Liquid Classes: 1. Best conditions from DOE runs 2. Best conditions predicted by effects model 3. Original settings • 2 calibration modifications: 1. Original 2. Reduced off-set • 2 Volumes: 1. 20 mL 2. 100 mL • 6 dispense replicates / channel • 8 channels • 6 * 8 = 24 data points per liquid class & volume
  • 22. Results (Total Averaged Data) % Bias % CV • No improvement in %Bias • Much tighter %CV for settings predicted by the model • Single outlier in original liquid class No solution was added to the wells (robotic failure?)
  • 23. Results (Outlier Excluded) % Bias % CV DOE Data DOE Data-Offset DOE Prediction DOE Prediction-Offset Old 10.0 7.5 5.0 2.5 0.0 -2.5 -5.0 Liquid Class Average % Bias Boxplot of Average % Bias, outlier excluded DOE Data DOE Data-Offset DOE Prediction DOE Prediction-Offset Old 700 600 500 400 300 200 100 0 -100 -200 Liquid Class Average %CV of bias Boxplot of Average %CV of bias, outlier excluded • No improvement in %Bias • Much tighter %CV for settings predicted by the model
  • 24. Conclusions - Strategy - • No significant difference between robots (?) Liquid classes can be transferred • Optimization at 20 mL can be transferred to larger volumes • Bias may be addressed with calibration Liquid class can be optimized for precision • Placket-Burman design is efficient to screen a number of factors and reduce the total. Fold-over design helps understanding main factors • Even with a limited model, improvements can be achieved • Numerous interactions require a fractional factorial design for complete modeling
  • 25. Conclusions - DOE Analysis - • Response may need log-transformation • Bias and Precision are driven by different factors with some overlapp • Most factors interact. Few stand-alone main effects. • Confounded models may not adequately predict performance • Blocking for factors that are not going to be optimized further can enhance analysis of the remaining factors
  • 26. Path Forward • Characterization DOE and eventually a Response Surface DOE with reduced number of factors • Repeat the study for a protein solution (2-5% BSA) • Improve experimental design based on experience with this study: – No conditioning – Focus on lowest volume – Consider a fractional factorial design with less replication for screening
  • 28. DOE1 – 99 90 50 DOE1, Residual Plots for Log %Bias Normal Probability Plot Versus Fits -0.50 -0.25 0.00 0.25 0.50 Residual Plots 10 1 Residual Percent 0.4 0.6 0.8 1.0 1.2 0.50 0.25 0.00 -0.25 -0.50 Fitted Value Residual Histogram Versus Order -0.4 -0.2 0.0 0.2 0.4 24 18 12 6 0 Residual Frequency 1 5 10 15 20 25 30 35 40 45 0.50 0.25 0.00 -0.25 -0.50 Observation Order Residual
  • 29. DOE2 – DOE2, Residual Plots for Log %CV Normal Probability Plot Versus Fits -0.50 -0.25 0.00 0.25 0.50 Residual Plots 99 90 50 10 1 Residual Percent 0.3 0.6 0.9 1.2 0.50 0.25 0.00 -0.25 -0.50 Fitted Value Residual Histogram Versus Order -0.6 -0.4 -0.2 0.0 0.2 0.4 8 6 4 2 0 Residual Frequency 1 5 10 15 20 25 30 35 40 45 0.50 0.25 0.00 -0.25 -0.50 Observation Order Residual DOE2, Residual Plots for Log %Bias Normal Probability Plot Versus Fits -0.50 -0.25 0.00 0.25 0.50 99 90 50 10 1 Residual Percent 0.6 0.8 1.0 1.2 1.4 0.50 0.25 0.00 -0.25 -0.50 Fitted Value Residual Histogram Versus Order -0.4 -0.2 0.0 0.2 0.4 12 9 6 3 0 Residual Frequency 1 5 10 15 20 25 30 35 40 45 0.50 0.25 0.00 -0.25 -0.50 Observation Order Residual
  • 30. Comparison of DOE1 & 2, Main Effects DOE1, Main Effects Plot for Log %Bias 50 150 1.0 0.9 0.8 Data Means 50 1000 5 60 0 10 0 10 1.0 0.9 0.8 no y es 50 500 50 1000 5 60 1.0 0.9 0.8 20 200 A sp Speed Mean A sp delay A sp Retract Speed A sp lead/Disp Trail A ir Gap Dispense Trailing A ir Gap C onditioning Disp Speed Disp Delay Retract Speed Break-off Speed DOE2, Main Effects Plot for Log %Bias 50 250 1.1 1.0 0.9 Data Means 50 1000 5 60 0 10 1.1 1.0 0.9 no y es 50 500 50 1000 1.1 1.0 0.9 5 60 20 200 A sp Speed Mean A sp delay A sp Retract Speed A sp lead/Disp Trail A ir Gap C onditioning Disp Speed Disp Delay Retract Speed Break-off Speed
  • 31. Comparison of DOE1 & 2, Main Effects DOE1, Main Effects Plot for Log %CV 50 150 0.5 0.4 0.3 Data Means 50 1000 5 60 0 10 0 10 0.5 0.4 0.3 no y es 50 500 50 1000 5 60 0.5 0.4 0.3 20 200 A sp Speed Mean A sp delay A sp Retract Speed A sp lead/Disp Trail A ir Gap Dispense Trailing A ir Gap C onditioning Disp Speed Disp Delay Retract Speed Break-off Speed DOE2, Main Effects Plot for Log %CV 50 250 0.9 0.8 0.7 Data Means 50 1000 5 60 0 10 0.9 0.8 0.7 no y es 50 500 50 1000 0.9 0.8 0.7 5 60 20 200 A sp Speed Mean A sp delay A sp Retract Speed A sp lead/Disp Trail A ir Gap C onditioning Disp Speed Disp Delay Retract Speed Break-off Speed
  • 32. DOE1, Results, Second Order Factor Model 2.064 F actor Name A Target V olume (uL) B A sp Speed C A sp delay D A sp Retract Speed E A sp lead/Disp Trail A ir Gap F Dispense Trailing A ir Gap G C onditioning H Disp Speed J Disp Delay A C G AD AG E L D F B H AF AK AJ BC AC AL K AE J AH 2.064 • Aspiration Volume has the largest effect for %CV F actor Name A Target V olume (uL) B A sp Speed C A sp delay D A sp Retract Speed E A sp lead/Disp Trail A ir Gap F Dispense Trailing A ir Gap G C onditioning H Disp Speed J Disp Delay → Not practical to improve process by volume. Required to pipette multiple volumes. *Use the small volume for future runs* • Conditioning has the largest effect for %Bias → Do not condition during future runs. G A AH AE AK AF AG BC K AD AJ H J AL F E L D AB C B AC 0 1 2 3 4 Term Standardized Effect K Retract Speed L Break-off Speed DOE1 with Volume, Pareto (response is Log %Bias, Alpha = 0.05) AB 0 1 2 3 4 5 6 7 Term Standardized Effect K Retract Speed L Break-off Speed DOE1 with Volume, Pareto (response is Log %CV, Alpha = 0.05)
  • 33. DOE2 – ANOVA of log %CV Analysis of Variance for Log %CV (coded units) Source DF Seq SS Adj SS Adj MS F P Main Effects 9 2.15259 2.15259 0.23918 1.73 0.116 Asp Speed 1 0.00360 0.00360 0.00360 0.03 0.873 Asp delay 1 0.02056 0.02056 0.02056 0.15 0.702 Asp Retract Speed 1 0.00006 0.00006 0.00006 0.00 0.983 Asp lead/Disp Trail Air Gap 1 0.46353 0.46353 0.46353 3.35 0.075 Conditioning 1 1.01453 1.01453 1.01453 7.34 0.010 Disp Speed 1 0.61547 0.61547 0.61547 4.45 0.042 Disp Delay 1 0.00050 0.00050 0.00050 0.00 0.952 Retract Speed 1 0.00440 0.00440 0.00440 0.03 0.859 Break-off Speed 1 0.02993 0.02993 0.02993 0.22 0.644 Residual Error 38 5.25335 5.25335 0.13825 Lack of Fit 14 2.57768 2.57768 0.18412 1.65 0.136 Pure Error 24 2.67567 2.67567 0.11149 Total 47 7.40594 Unusual Observations for Log %CV Obs StdOrder Log %CV Fit SE Fit Residual St Resid 40 40 1.33029 0.59572 0.16971 0.73456 2.22R R denotes an observation with a large standardized residual. Estimated Coefficients for Log %CV using data in uncoded units Term Coef Constant 1.03053 Asp Speed 0.000086644 Asp delay -4.35743E-05 Asp Retract Speed -0.00004191 Asp lead/Disp Trail Air Gap -0.0196538 Conditioning 0.145383 Disp Speed -5.03271E-04 Disp Delay -6.78313E-06 Retract Speed -0.00034799 Break-off Speed 0.000277455 Factorial Fit: Log %CV versus Asp Speed, Asp delay, ... Estimated Effects and Coefficients for Log %CV (coded units) Term Effect Coef SE Coef T P Constant 0.7983 0.05367 14.87 0.000 Asp Speed 0.0173 0.0087 0.05367 0.16 0.873 Asp delay -0.0414 -0.0207 0.05367 -0.39 0.702 Asp Retract Speed -0.0023 -0.0012 0.05367 -0.02 0.983 Asp lead/Disp Trail Air Gap -0.1965 -0.0983 0.05367 -1.83 0.075 Conditioning 0.2908 0.1454 0.05367 2.71 0.010 Disp Speed -0.2265 -0.1132 0.05367 -2.11 0.042 Disp Delay -0.0064 -0.0032 0.05367 -0.06 0.952 Retract Speed -0.0191 -0.0096 0.05367 -0.18 0.859 Break-off Speed 0.0499 0.0250 0.05367 0.47 0.644 S = 0.371815 PRESS = 8.38208 R-Sq = 29.07% R-Sq(pred) = 0.00% R-Sq(adj) = 12.27%
  • 34. DOE2 – ANOVA of log %Bias Analysis of Variance for Log %Bias (coded units) Source DF Seq SS Adj SS Adj MS F P Main Effects 9 1.23678 1.23678 0.137420 1.22 0.312 Asp Speed 1 0.08264 0.08264 0.082638 0.73 0.397 Asp delay 1 0.00415 0.00415 0.004153 0.04 0.849 Asp Retract Speed 1 0.02543 0.02543 0.025431 0.23 0.637 Asp lead/Disp Trail Air Gap 1 0.06964 0.06964 0.069644 0.62 0.436 Conditioning 1 0.49750 0.49750 0.497495 4.42 0.042 Disp Speed 1 0.49657 0.49657 0.496573 4.41 0.042 Disp Delay 1 0.00262 0.00262 0.002625 0.02 0.879 Retract Speed 1 0.04862 0.04862 0.048619 0.43 0.515 Break-off Speed 1 0.00961 0.00961 0.009605 0.09 0.772 Residual Error 38 4.27884 4.27884 0.112601 Lack of Fit 14 1.78955 1.78955 0.127825 1.23 0.316 Pure Error 24 2.48929 2.48929 0.103721 Total 47 5.51562 Unusual Observations for Log %Bias Obs StdOrder Log %Bias Fit SE Fit Residual St Resid 40 40 1.53174 0.85781 0.15316 0.67393 2.26R 44 44 1.74424 1.07701 0.15316 0.66723 2.23R 48 48 1.72926 1.01078 0.15316 0.71848 2.41R R denotes an observation with a large standardized residual. Estimated Coefficients for Log %Bias using data in uncoded units Term Coef Constant 1.03024 Asp Speed 0.000414925 Asp delay -1.95826E-05 Asp Retract Speed 0.00083700 Asp lead/Disp Trail Air Gap -0.00761819 Conditioning 0.101806 Disp Speed -4.52052E-04 Disp Delay 0.000015568 Retract Speed 0.00115731 Break-off Speed -1.57179E-04 Factorial Fit: Log %Bias versus Asp Speed, Asp delay, ... Estimated Effects and Coefficients for Log %Bias (coded units) Term Effect Coef SE Coef T P Constant 0.9755 0.04843 20.14 0.000 Asp Speed 0.0830 0.0415 0.04843 0.86 0.397 Asp delay -0.0186 -0.0093 0.04843 -0.19 0.849 Asp Retract Speed 0.0460 0.0230 0.04843 0.48 0.637 Asp lead/Disp Trail Air Gap -0.0762 -0.0381 0.04843 -0.79 0.436 Conditioning 0.2036 0.1018 0.04843 2.10 0.042 Disp Speed -0.2034 -0.1017 0.04843 -2.10 0.042 Disp Delay 0.0148 0.0074 0.04843 0.15 0.879 Retract Speed 0.0637 0.0318 0.04843 0.66 0.515 Break-off Speed -0.0283 -0.0141 0.04843 -0.29 0.772 S = 0.335561 PRESS = 6.82718 R-Sq = 22.42% R-Sq(pred) = 0.00% R-Sq(adj) = 4.05%
  • 35. % Bias Interaction Plots: DOE1 vs. DOE 2 DOE1 DOE2 50 1000 no yes 50 1000 20 200 1.10 0.95 0.80 1.10 0.95 0.80 1.10 0.95 0.80 1.10 0.95 0.80 Asp Speed Asp delay Conditioning Disp Delay Break-off Speed Asp Speed 50 250 Asp delay 50 1000 Conditioning no yes Disp Delay 50 1000 Interaction Plot for Log %Bias Data Means 50 1000 No yes 50 1000 20 200 6 0 -6 6 0 -6 6 0 -6 6 0 -6 aspiration speed* aspiration delay conditioning volume** dispense delay Dispense Break-off Speed*** aspiration speed* 50 150 aspiration delay 50 1000 conditioning volume** No yes dispense delay 50 1000 Interaction Plot for Average Run Bias (%) Data Means • 2nd Level interactions are confounded in the Plackett Burman Design • Results from both DOE studies indicate interactions are significant • A screening study with clear 2-level interactions is needed to learn more • Mostly similar effects. Differences may be due to: DOE 1 run with volume as a factor DOE 2 had a reduced number of factors (9) from DOE (11)
  • 36. % Bias Interaction Plots: DOE1 vs. DOE 2 DOE1 DOE2 50 1000 No yes 50 1000 20 200 102 96 90 102 96 90 102 96 90 102 96 90 aspiration speed* aspiration delay conditioning volume** dispense delay • 2nd Level interactions are confounded in the Plackett Burman Design • Results from both DOE studies indicate interactions are significant • A screening study with clear 2-level interactions is needed to learn more • Mostly similar effects. Differences may be due to: DOE 1 run with volume as a factor DOE 2 had a reduced number of factors (9) from DOE (11) aspiration speed* aspiration delay conditioning volume** dispense delay Dispense Break-off Speed*** 50 150 50 1000 No yes 50 1000 Interaction Plot for Average Run Accuracy (%) Data Means 50 1000 no yes 50 1000 20 200 1.0 0.8 01..06 0.8 01..06 0.8 01..06 0.8 0.6 Asp Speed Asp delay Conditioning Disp Delay Break-off Speed Asp Speed 50 250 Asp delay 50 1000 Conditioning no yes Disp Delay 50 1000 Interaction Plot for Log %CV Data Means