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Research & Reviews: A Journal of
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Research & Reviews: A Journal of Drug Design & Discovery
ISSN: 2349-9036(online)
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STM JOURNALS
1. QSAR Studies on Schiff Bases of Pyrrole-2-Carboxaldehyde for Antimicrobial Activity
Ashwani Kumar, Pardeep Kumar, Parvin Kumar 1
2. Semiempirical Modeling and Docking Studies of Pyrrole-2-Carboxaldehyde Schiff Bases
Ashwani Kumar, Pardeep Kumar, Parvin Kumar 9
3. QSAR Studies of 3-(4-(3-(Substitutedphenyl) Acryloyl) Phenyl)-2-Substituted
phenyl/Phenylthiazolidin-4-ones for Anticancer Activity
Ashwani Kumar, Ruchika Goyal, Sunil Kumar, Sandeep Jain, Parvin Kumar 16
4. In vitro Cytotoxicity of 17-Oxo-5-androsten-3β-yl esters against Liver, Neuroblastoma and
Colon Cancer Cell Lines
Neelima Dhingra 23
5. Medicinal Chemistry of Nanoparticles for Cancer Theranostics
Sandip Zine, Sarita Kunchikorve, Pooja Dubey 28
ContentsResearch & Reviews: A Journal of Drug Design & Discovery
RRJoDDD (2016) 1-8 © STM Journals 2016. All Rights Reserved Page 1
Research & Reviews: A Journal of Drug Design & Discovery
ISSN: 2349-9036(online)
Volume 3, Issue 3
www.stmjournals.com
QSAR Studies on Schiff Bases of
Pyrrole-2-Carboxaldehyde for Antimicrobial Activity
Ashwani Kumar1,
*, Pardeep Kumar1
, Parvin Kumar2
1
Department of Pharmaceutical Sciences, Guru Jambheshwar University of Science and Technology,
Hisar, Haryana, India
2
Department of Chemistry, Kurukshetra University, Kurukshetra, Haryana, India
Abstract
Pyrrole and Schiff bases are therapeutically significant organic moieties. QSAR (Quantitative
structure-activity relationship) studies of thirteen pyrrole-2-carboxyaldehyde Schiff bases
have been described for antimicrobial activity against S. epidermidis, E. coli and S. aureus.
Described 2D QSAR models are statistically significant models with good fitting ability and
robustness. The Q2
value is more than 0.5 for all discussed models which confirms the internal
predictive power of the derived QSAR equations. Molecular weight, autocorrelation
descriptors and burden modified eigenvalues descriptors were important in explanation of
antimicrobial activity trends.
Keywords: Schiff bases, antimicrobial, QSAR, descriptors
INTRODUCTION
The importance of compounds with
heterocyclic nucleus is increasing due to their
significant therapeutic actions. Among them,
five membered heterocycles containing at least
one nitrogen atom have attained special
attention of researchers. Pyrrole moiety is
present in many compounds possessing
various types of activities like antimicrobial
[1], antidiabetic [2], anti-inflammatory [3],
and anticancer [4]. Some examples of
marketed drugs containing pyrrole nucleus are
tallimustine, BM 212, atrovastatin,
pyrrolomycin B, pyoluteorin and pyrrolnitrin
[1]. Schiff bases prepared from heterocyclic
moieties possess many pharmacological
activities e.g. anticholinesterase [5–7], anti-
inflammatory [8], anti-HIV [9], antimicrobial
[10], anticonvulsant [11], antifungal [12],
antibacterial [13], and antitumor [14].
Preparation of Schiff bases is very easy and
these are used as intermediates for synthesis of
many important organic molecules [10].
QSAR (Quantitative structure-activity
relationship) study is an effective technique to
explore the relationship amid pharmacological
activity and structural features of the
compounds. QSAR tool makes the drug
discovery process economic and faster by
reducing the cost and time involved.
Therefore, developing a QSAR model for
biologically active chemicals is an important
step for further discovery of novel drugs. 2D
QSAR methods are easy to apply and their
interpretation is also simple [15]. Inspired by
the above facts, we describe herein the QSAR
studies for antimicrobial activity of Schiff
bases derived from pyrrole-2-carboxyaldehyde
reported in literature [10].
QSAR STUDIES
Data
A dataset of thirteen Schiff bases derived from
pyrrole-2-carboxyaldehyde was used for
QSAR studies [10].
Structure of Schiff Bases
The (2D) structures of the molecules were
made using Marvin Sketch (5.10) [16] and
optimized as per the reported procedure [15].
Generation of Descriptors
For developing a QSAR model, the molecules
were represented by molecular properties and
these were calculated using PaDEL Descriptor
2.12 program [17]. The constant or near
constant parameters were not used. Also, the
RRJoDDD (2016) 9-15 © STM Journals 2016. All Rights Reserved Page 9
Research & Reviews: A Journal of Drug Design & Discovery
ISSN: 2349-9036(online)
Volume 3, Issue 3
www.stmjournals.com
Semiempirical Modeling and Docking Studies of
Pyrrole-2-Carboxaldehyde Schiff Bases
Ashwani Kumar1,
*, Pardeep Kumar1
, Parvin Kumar2
1
Department of Pharmaceutical Sciences, Guru Jambheshwar University of Science and Technology,
Hisar, Haryana, India
2
Department of Chemistry, Kurukshetra University, Kurukshetra, Haryana, India
Abstract
Docking stimulation of antimicrobial compound SB7 against the active site of Mandelate
racemase has been accomplished. This compound was engaged in various types of
interactions with the binding site residues. Further, molecular modeling of all the target
compounds was performed using MOPAC 2016 and various parameters were identified. SB1,
SB2 and SB5 were found to be most stable compounds and had highest dipole moment. The
compound SB8 came out to be most nucleophilic compound while SB10 was least
electrophilic. Electrostatic potential surface of all the compounds has also been computed.
Keywords: Schiff bases, antimicrobial, docking, MOPAC, PM7
INTRODUCTION
Pyrrole-2-carboxyaldehye is a nitrogen
containing five membered ring moiety
possessing various types of biological
activities like anti-inflammatory [1],
antimalarial [2], antimicrobial [3], anticancer
[4], anticonvulsant [5], antidiabetic [6],
antioxidant [7], and anti-HIV [8]. Schiff bases
are also known as imines (–N=CH–) or
azomethine. These are synthesized by
condensation of primary amine with aldehyde
or ketone derivatives by removal of water
molecule.
Schiff bases are generally most widely used
organic compounds by which we can form
various types of derivatives like intermediates
of various organic reactions, polymer
stabilizer, pigments, dyes etc.
They also exhibit broad spectrum of activities
like- antibacterial [9], antifungal [9, 10],
anticancer [11], anti-inflammatory [12], anti-
candida [13], analgesic [14], antiviral [15],
anti TB [16], and anticholinesterase [17–19].
Molecular modeling is an excellent tool to
study geometry, electrostatic potential,
stability, reactivity and biological properties of
chemical moieties. Semiemperical methods
have been widely used for these types of
studies due to their faster responses and
accuracy. MOPAC is excellent software used
for performing molecular modeling
studies [20].
Molecular docking is a part of molecular
modeling used in structure based drug design.
It involves anchoring of a ligand (usually
small organic compounds, proteins or nucleic
acid) into the active site or allosteric sites of
the target molecule (protein, nucleic acid).
This technique has resulted in discovery of
various novel therapeutically active
molecules [21].
Schiff bases of pyrrole-2-carboxyaldehyde
showed good antimicrobial activity in the test
done by us [9]. Molecular modeling and
docking studies on these derivatives have not
been reported till now.
Therefore, in the present study we report
molecular modeling studies of all the
synthesized compounds and docking
stimulation of the most active compound SB7.
MATERIALS AND METHODS
The structures of the compounds were taken
from the literature and are given in Figure 1
and Table 1 [9].
RRJoDDD (2016) 16-22 © STM Journals 2016. All Rights Reserved Page 16
Research & Reviews: A Journal of Drug Design & Discovery
ISSN: 2349-9036(online)
Volume 3, Issue 3
www.stmjournals.com
QSAR Studies of 3-(4-(3-(Substitutedphenyl) Acryloyl)
Phenyl)-2-Substituted phenyl/Phenylthiazolidin-4-ones for
Anticancer Activity
Ashwani Kumar1
, Ruchika Goyal1,*
, Sunil Kumar1
, Sandeep Jain1
, Parvin Kumar2
1
Department of Pharmaceutical Sciences, Guru Jambheshwar University of Science and Technology,
Hisar, Haryana, India
2
Department of Chemistry, Kurukshetra University, Kurukshetra, Haryana, India
Abstract
Both, Chalcone and 4-thiazolidinone, are therapeutically significant organic moieties with
anticancer activities. QSAR (Quantitative structure–activity relationship) studies of ten
synthesized chalcone-thiazolidinone hybrids have been described for anticancer activity
against three cancer cell lines: A-549 (Human lung adenocarcinoma), U-87 MG (Human
glioblastoma cancer cells) and COLO-205 (Human colon cancer cells). The developed linear
QSAR models have significant statistical quality showing good fitting ability and robustness.
The Q2
and R2
values of all the described models were more than 0.5 which corroborated the
internal predictive ability of the resultant QSAR equations. Wlambda3.mass, SC-3, FNSA-3,
BCUTp-1l, Wlambda1.unity descriptors were imperative in elucidation of anticancer activity
trends.
Keywords: Chalcone-thiazolidinone hybrids, anticancer activity, cell lines, QSAR
INTRODUCTION
Cancer is the main cause of death in
economically developed countries and the
second leading cause of death in developing
countries. The global burden of cancer
continues to increase largely because of the
aging and growth of the world population
along with an increasing adoption of cancer-
causing behaviors, particularly smoking, in
economically developing countries [1].
Heterocyclic compounds containing sulphur
and nitrogen, especially thiazolidinones, have
been widely explored for their applications in
the field of medicine. The 4-thiazolidinone
nucleus forms the heart of numerous
biologically active chemical compounds.
Some of the representatives of this
heterocyclic systems exhibit: antitumor, anti-
inflammatory, antibacterial, analgesic and
antihyperglycaemic activity [2–4]. Chalcone is
an aromatic ketone, generally derivative of
phenyl styryl ketone. These are abundant in
plants and are considered to be precursors of
flavonoids and isoflavonoids [5]. The broad
and potent activity of chalcones has
established it as one of the most
therapeutically vital scaffold [6]. Some
researchers have synthesized thiazolidinones
and chalcones with a variety of biological
activities [7]. Therefore, looking at the
importance of these two moieties, we
accommodated the chalcones with 4-
thiazolidinone nucleus in our previous
work [8].
Quantitative Structure Activity Relationship
(QSAR) technique has been effectively used
for screening of the potential drugs. This
approach is used to study the relationship
between the activity and structure of the
compounds in a mathematical way. This
technique uses calculated or experimental
molecular descriptors of the compounds as
independent variables along with the
biological activity as dependent variable.
Multidimensional QSAR techniques have been
reported in the literature [9–11]. Considering
these facts, we describe herein, the linear
QSAR studies of 3-(4-(3
RRJoDDD (2016) 23-27 © STM Journals 2016. All Rights Reserved Page 23
Research & Reviews: A Journal of Drug Design & Discovery
ISSN: 2349-9036(online)
Volume 3, Issue 3
www.stmjournals.com
In vitro Cytotoxicity of 17-Oxo-5-androsten-3β-yl esters
against Liver, Neuroblastoma and Colon Cancer Cell Lines
Neelima Dhingra*
Department of Pharmaceutical Chemistry, University Institute of Pharmaceutical Sciences,
Panjab University, Chandigarh, Panjab, India
Abstract
A tumor is abnormal growth of body tissue and steroidal derivatives represent a distinct class
of antineoplastic agents. Positioning of the oxo group on the parental steroid skeleton has
significant effect on the antineoplastic activity profile of the compounds. Recent work from
our laboratory has also demonstrated the effectiveness of 17-oxo-5-androsten-3β-yl ester
derivatives as potential antiproliferative agents and 5-alpha reductase inhibitors. The current
study was undertaken to investigate the cytotoxicity using sulforhodamine B dye (SRB ) assay
of the synthesized derivative against six more human cancer cell lines at the 1X 10-5
m (single
dose).
Keywords: Cytotoxicity, Human cancer cell lines, Steroids, Sulphorodamine B6
INTRODUCTION
Neoplasm is described by abnormal increase
in the number of cells, which may result not
only from increased cell proliferation but also
from decreased level in programmed cell death
(apoptosis) [1]. Cells die in response to
development signals, and the process is
characterized by number of biochemical
changes. Any influence between the
physiological process of cell proliferation and
cell death may lead to change in organ size
with the subsequent development of
abnormalities in particular organ [2]. So it is
reasonable to assume that cytotoxic agents act
by killing the cells or by preventing the cell
proliferation, thus are useful for the treatment
of disease that involve abnormal or
uncontrolled cell proliferation.
The steroid system, selected by the evolutionary
process to perform some of the most
fundamental biological functions, has not only
inspired the biochemists and endocrinologists,
but has also become the basis of the most
phenomenal developments in medicinal
chemistry. Naturally occurring steroids have
been modified at different positions to get active
molecule which show less or few undesirable
side-effect. Number of investigators have
synthesized and reported cyano-progesterone (1),
methylene homologue derivatives (2a-2d) and
16-substituted progesterone derivatives (3) as
potent cytotoxics and five alpha reductase
inhibitors [3–5]. Studies have revealed that the
location of the heteroatom or change in the
position of any group on the parent steroid
skeleton affects the cytotoxicity profile of the
compounds, as exemplified by the synthesis of
D homo progesterone (4) (Figure 1) [6].
Recent work from our laboratory described
the synthesis of esters of 17-oxo-5-
androsten 3β-ol and their evaluation as
antiproliferative agents and 5-alpha
reductase inhibitors [7]. This group of
steroids has displayed significant
antiproliferative activity as compared to
reference drug finasteride, against human
RRJoDDD (2016) 28-41 © STM Journals 2016. All Rights Reserved Page 28
Research & Reviews: A Journal of Drug Design & Discovery
ISSN: 2349-9036(online)
Volume 3, Issue 3
www.stmjournals.com
Medicinal Chemistry of Nanoparticles for Cancer
Theranostics
Sandip Zine*, Sarita Kunchikorve, Pooja Dubey
Pharmaceutical Chemistry, Vivekanand Education Society's College of Pharmacy, Chembur,
Mumbai, Maharashtra, India
Abstract
Cancer is a disease in which cells growth is uncontrollable and conventional treatment have a
few side effects, for example, nonspecific delivery, unable to enter the center of tumor and
absence of solubility. Nanoparticles could directly target disease cells specifically and
increased medication localization in tumor cells giving exact cellular uptake. The theranostic
nanomedicine can accomplish systemic flow, avoid host resistances and deliver the
medication and diagnostic agents at the target site to analyze and treat the tumor at cellular
and molecular level; in short it is a combination of therapeutic and diagnostic agent. Gold
nanoparticles, quantum dots are used as nanotheranostics. These agents act by passive and
active targeting on cancerous cells. Synthesis of nanotheranostic is also discussed.
Keywords: Cancer, Nanotheranostics, Quantum dots, Gold nanoparticle
INTRODUCTION
Cancer is a disease in which abnormal cells
divide without control and have capability to
invade other tissues. Cancer is caused by
changes to genes which control the way our
cell function, specifically how they grow and
divide. Cancer cells are formed due to changes
in DNA. Cells experience uncontrolled growth
when there are mutations to DNA and
therefore, alterations to the genes involved in
cell division. There are four types of genes
involved in cell division process: oncogenes
instructs cells when to divide, tumor
suppressor genes instructs cells when not to
divide, suicide genes control apoptosis and
make cells to kill itself if something goes
wrong and DNA repair genes tell a cell to
repair damaged DNA. Carcinogenes are
substances that are directly responsible for
damaging DNA, promoting or aiding cancer.
Tobacco, asbestos, arsenic, radiations such as
x-rays, gamma, sun and compounds involved
in car exhaust fumes these are the examples of
carcinogenes. When our bodies are exposed to
carcinogenes, free radicals are formed which
try to steal electrons from other molecules
present in the body. These free radicals
damages cells and therefore, affect their ability
to function normally.
Research & Reviews: A Journal of
Drug Design & Discovery
(RRJoDDD)
ISSN 2349-9036 (Online)
September–December 2016
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Energy Science/ /
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Research & Reviews A journal of Drug Design & Discovery vol 3 issue 3

  • 1. Research & Reviews: A Journal of Drug Design & Discovery (RRJoDDD) ISSN 2349-9036 (Online) September–December 2016 conducted Ch Instrumentation/ / / Energy Science/ / 22 STMJournals invitesthepapers from the National Conferences, International Conferences, Seminars conducted by Colleges, Universities, Research Organizations etc. for Conference Proceedings and Special Issue. xSpecial Issues come in Online and Printversions. xSTM Journals offers schemes to publish such issues on payment and gratis(online)basisas well. To g e t m o r e i n f o r m a t i o n : stmconferences.com Over 500 Indian and International Subscribers. 30,000 Top Researchers, Scientists, Authors and Editors All Over the WorldAssociated. Editorial/ Reviewer Board Members : . 1000 + 1,00,000 Visitors to STM Website+ From 140 CountriesQuarterly. + 10,000 Downloads from STM + Website. GLOBAL READERSHIP STATISTICS STM Journals Empowering knowledge Free Online Registration ISO: 9001Certified www.stmjournals.com STM JOURNALS Scientific Technical Medical
  • 2. STM Journals, a strong initiative by Consortium E-Learning Network Private Ltd. (established 2006), was launched in the year 2010 under the support and guidance by our esteemed Editorial and Advisory Board Membersfromrenownedinstitutes. Objectives: ď‚ź Promotion of Scientific, Technical and Medical research. ď‚ź Publication of Original Research/Review, Short Articles and Case Studies through Peer Review process. ď‚ź Publishing Special Issues on Conferences. ď‚ź Preparing online platform for print journals. ď‚ź Empowering the libraries with online and print Journals in Scientific, Technical and Medical domains. ď‚ź Publishing and distribution of books on various subjects in the category of Nanotechnology, Scientific and Technical Writing, and Environment, Health and Safety. SalientFeatures: ď‚ź A bouquet of 100+ Journals that fall under Science, Technical and Medical domains. ď‚ź Employs Open Journals System (OJS)—a journal management and publishing system. ď‚ź The first and one of the fastest growing publication website in India as well as in abroad for its quality and coverage. ď‚ź Rapid online submission and publication of papers, soon after their formal acceptance/finalization. ď‚ź Facilitates linking with the other authors or professionals. ď‚ź Worldwide circulation and visibility. Research & Reviews: A Journal of Drug Design & Discovery ISSN: 2349-9036(online) Focus and Scope Covers  Structurebaseddrug design  MedicinalChemistry&Pharmacokinetics  Protein–proteininteractions  Protein&Peptidedrugs  QSAR, MolecularModelling  Targetbaseddesign  PharmacoreModelling Research & Reviews: A Journal of Drug Design & Discovery is published (frequency: three times a year) in India by STM Journals (division of Consortium e-Learning Network Private Ltd. Pvt.) The views expressed in the articles do not necessarily reflect of the Publisher. The publisher does not endorse the quality or value of the advertised/sponsored products described therein. Please consult full prescribing information before issuing a prescription for any products mentionedinthispublication. No part of this publication may be reproduced, stored in retrieval system or transmitted in any from without written permissionof thepublisher. To cite any of the material contained in this Journal, in English or translation, please use the full English reference at the beginningof eacharticle.Toreuseanyofthematerial,pleasecontactSTM Journals (info@stmjournals.com) STM Journals
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  • 4. Gargi Asha Jha Manager (Publications) PUBLICATION MANAGEMENT TEAM Internal Members External Members Bimlesh Lochab Assistant Professor Department of Chemistry School of Natural Sciences, Shiv Nadar University Gautam Buddha Nagar, Uttar Pradesh, India Dr. Rajiv Prakash Professor and Coordinator School of Materials Science and Technology Indian Institute of Technology (BHU), Varanasi Uttar Pradesh, India Dr. Rakesh Kumar Assistant Professor Department of Applied Chemistry BIT Mesra, Patna, Bihar, India Prof. S. Ramaprabhu Alternative Energy and Nanotechnology Technology Laboratory, Department of Physics Indian Institute of Technology, Chennai Tamil Nadu, India Himani Pandey Isha Chandra Senior Associate Editors Dr. Yog Raj Sood Dean (Planning and Development) Professor, Department of Electrical Engineering National Institute of Technology, Hamirpur Himachal Pradesh, India Prof. Chris Cannings Professor, School of Mathematics and Statistics University of Sheffield, Sheffield United Kingdom Dr. D. K. Vijaykumar MS, MCh (Surgical Oncology), Professor and Head Department of Surgical Oncology Amrita Institute of Medical Sciences and Research Centre Ponekkara, Cochin, Kerala, India Dr. Durgadas Naik Associate Professor (Microbiology) Management and Science University, University Drive, Seksyen13 Selangor, Malaysia Prof. JosĂ© MarĂ­a Luna Ariza Department of Computer Sciences and Numerical Analysis Campus of Rabanales University of CĂłrdoba, Spain Dr. Khaiser Nikam Professor, Library and Information Science Department of Library and Information Science University of Mysore Mysore, India Quaisher J Hossain Senior Editor Group Managing Editor Dr. Archana Mehrotra Managing Director CELNET, Delhi, India Meenakshi Tripathi Shivani Sharma Chairman Mr. Puneet Mehrotra Director Shambhavi Mishra Associate Editors Sugandha Mishra
  • 5. Prof. Priyavrat Thareja Director Principal Rayat Institute of Engineering and Information Technology Punjab, India Dr. Baldev Raj Director, National Institute of Advanced Studies Indian Institute of Science campus Bangalore Karnataka, India Former Director Indira Gandhi Centre for Atomic Research, Kalpakkam, Tamil Nadu, India Dr. Pankaj Poddar Senior Scientist Physical and Materials Chemistry Division, National Chemical Laboratory Pune, Maharastra India Prof. D. N. Rao Professor and Head Department of Biochemistry All India Institute of Medical Sciences New Delhi, India Dr. Nandini Chatterjee Singh Additional Professor National Brain Research Centre Manesar, Gurgaon Haryana, India Dr. Ashish Runthala Lecturer, Biological Sciences Group Birla Institute of Technology and Science Pilani, Rajasthan, India Dr. Bankim Chandra Ray Professor and Ex-Head of the Department Department of Metallurgical and Materials Engineering National Institute of Technology, Rourkela Odisha, India Prof. Yuwaraj Marotrao Ghugal Professor and Head Department of Applied Mechanics Government College of Engineering Vidyanagar, Karad Maharashtra, India Dr. Hardev Singh Virk Visiting Professor, Department of Physics University of SGGS World University Fatehgarh Sahib, Punjab, India Former Director Research DAV Institute of Engineering and Technology Jallandhar, India Dr. Shrikant Balkisan Dhoot Senior Research Scientist, Reliance Industries Limited, Mumbai, India Former Head (Research and Development) Nurture Earth R&D Pvt Ltd., MIT Campus Beed Bypass Road, Aurangabad Maharashtra, India STM JOURNALS ADVISORY BOARD
  • 6. Dr. Rakesh Kumar Assistant Professor Department of Applied Chemistry Birla Institute of Technology Patna, Bihar, India Prof. Subash Chandra Mishra Professor Department of Metallurgical and Materials Engineering National Institute of Technology, Rourkela Odisha, India Dr. Shankargouda Patil Assistant Professor Department of Oral Pathology KLE Society's Institute of Dental Sciences Bangalore, Karnataka, India Prof. Sundara Ramaprabhu Professor Department of Physics Indian Institute of Technology Madras Chennai, Tamil Nadu India Dr. Baskar Kaliyamoorthy Associate Professor Department of Civil Engineering National Institute of Technology, Trichy Tiruchirappalli, Tamil Nadu, India STM JOURNALS ADVISORY BOARD
  • 7. Editorial Board Dr. A Srinivasa Rao Professor & HOD Dept. of Pharmaceutical Analysis & QA Shri Vishnu College of Pharmacy Vishnupur, A.P, India. Dr. Amita Verma Head Dept. of Pharmaceutical Sciences, SHIATS-Deemed University, Allahabad, India. Dr. Arabinda Nayak HOD, Department of Pharmacology, Gujarat Technological University, India. Dr. Deepika Singh Medical Chemistry Division CSIR - Indian Institute of Integrative Medicine, Canal Road, Jammu, India. Dr. Anita Mahapatra Assistant Professor, Dept. of Natural Products NIPER, Ahmedabad, Gujarat, India. Dr. Abhay Dharamsi Professor and Head Dept. of Pharmaceutics Maliba Pharmacy College Bardoli-Mahuva Road, Gujarat, India. Dr. George D Geromichalos Head, Molecular Modeling & Drug Design Symeonidion Research Center Theagenion Cancer Hospital, Greece. Dr. Jayarajakumar Kalaimani Faculty of Pharmacy, AIMST University, Bedong, Malaysia. Dr. K.K Sivakumar Assistant Professor, Department of Pharmaceutical Chemistry, KMCH College of Pharmacy, Coimbatore, India. Miss Maushmi Shailesh Kumar Assistant Professor, Dept. of Pharmaceutical Biotechnology, SPPSPTM, NMIMS University, Mumbai, India. Dr Murugesan Sankaran Assistant Professor, Department of Pharmacy, Birla Institute of Technology, Pilani, Rajasthan, India. Dr. Muthyala Murali Krishna Kumar Assistant Professor, College of Pharmaceutical Sciences, Andhra, India.
  • 8. Editorial Board Dr. Suneel .I. Majagi Associate Professor Department of Pharmacology J.N.Medical College Belgaum, Karnataka, India. Mr. T Durai Ananda Kumar Sr Assistant Professor, Dept of Pharmaceutical Chemistry, Gokaraju Rangaraju College of Pharmacy, Nizampet, Hyderabad, India. Dr. Udayabanu Malairaman Assistant Professor, Department of Pharmacy, Jaypee University of Information Technology, Solan, H.P, India. Dr. V. Ravichandran Faculty of Pharmacy, AIMST University, Semeling, Kedah, Malaysia. Dr. Jenifer Solomon Rajan Asst. Profesor, Department of Biotechnology, Bon Secours College for Womens, Thanjavur, Tamilnadu, India. Dr. Santanu Chakraborty Assistant Professor, Department: Pharmaceutics, Dr. B. C. Roy Engineering College, Kolkata, India. Dr. Sandip Prabhakar Zine Assistant Professor, Department of Pharmaceutical Chemistry, Vivekanand Education Society's College of Pharmacy, Mumbai, India. Dr. Nahlah Elkudsiah Ismail Faculty of Pharmacy, Universiti Teknologi MARA (UiTM) Puncak Alam Campus, Bandar Puncak Alam, Selangor, Malaysia. Dr. Mudit Dixit Head-Department of Drug Regulatory Affairs & Assistant Professor (Pharmaceutics)(Senior Grade), NGSM Institute of Pharmaceutical Sciences, Mangalore, India. Dr. Shihabuddin Bin Ahmad Senior Lecturer Faculty of Pharmacy, Universiti Teknologi MARA, Puncak Alam, Selangor, Malaysia. Ms. Soh Yee Chang Faculty of Pharmacy UiTM Puncak Alam Campus Malaysia. Dr. R Narayana Charyulu Vice Principal, Professor & HoD Department of Pharmaceutics, Nitte Gulabi Shetty Memorial Institute of Pharmaceutical Sciences, Deralakatte, Mangalore-575 018
  • 9. Editorial Board Dr. Nishant Shukla Lecturer Head of Kayachikitsa, Co-ordinator daivyavyapashrya chikitsa Kendra, India. Dr. Poonam Singh Scientist CSIR-Central Drug Research Institute, Lucknow, India. Mrs. Priti Jain Dept. of Pharmacy, Birla Institute of Technology and Science, Pilani, India. Dr. R.K Singh Senior Principal Scientist, CDRI, Lucknow, India. Dr. Pratap Chandra Acharya Assistant Professor, Dept. of Pharmaceutical Chemistry, SPPSPTM, SVKM'S NMIMS University, Mumbai, India. Dr. P. Senthil Kumar Assistant Professor, KMCH College of Pharmacy, Coimbatore, India. Dr. Sadia Sultan Lecturer, Faculty of Pharmacy, UiTM Puncak Alam Campus Bandar Puncak Alam Selangor, Malaysia. Dr. Sanghapal D. Sawant CSIR-Indian Institute of Integrative Medicine, Jammu, India. Dr. Sapna Shrikumar Principal, Moulana College of Pharmacy, Angadippuram , Perinthalmanna, Malappuram, Kerala, India. Dr. Shashank K Singh Senior Scientist, CSIR-Indian Institute of Integrative Medicine ,Canal Road Jammu, India. Dr. P.K. Kulkarni Professor and Head, Dept of Pharmaceutics, J.S.S.College of Pharmacy, S.S.Nagar, Mysore, Karnataka, India. Mr. Parmeshwar Bajirao Katare M.S (Pharm) Pharmacology and Toxicology, Drug Discovery Research Center (DDRC), (THSTI), Udyog Vihar, Gurgaon, Haryana, India.
  • 10. It is my privilege to present the print version of the [Volume 3 Issue 3] of our Research & Reviews:A Journal of Drug Design & Discovery, 2016. The intension of RRJoDDD is to create an atmosphere thatstimulatesvision,researchandgrowthintheareaof Drug Design &Discovery. Timely publication, honest communication, comprehensive editing and trust with authors and readers have been the hallmark of our journals. STM Journals provide a platform for scholarly research articles to be published in journals of international standards. STM journals strive to publish qualitypaperinrecordtime,makingitaleaderinserviceandbusiness offerings. The aim and scope of STM Journals is to provide an academic medium and an important reference for the advancement and dissemination of research results that support high level learning, teaching andresearchinalltheScience,TechnologyandMedicaldomains. Finally, I express my sincere gratitude to our Editorial/Reviewer board, Authors and publication team for their continued support and invaluable contributions and suggestions in the form of authoring writeups/reviewing and providing constructive comments for the advancement of the journals.With regards to their due continuous support and co-operation, we have been able to publish qualityResearch/Reviewsfindingsfor our customersbase. Ihopeyouwillenjoyreadingthisissue andwewelcomeyourfeedbackonanyaspectof theJournal. Dr.ArchanaMehrotra ManagingDirector STM Journals Director's Desk STM JOURNALS
  • 11. 1. QSAR Studies on Schiff Bases of Pyrrole-2-Carboxaldehyde for Antimicrobial Activity Ashwani Kumar, Pardeep Kumar, Parvin Kumar 1 2. Semiempirical Modeling and Docking Studies of Pyrrole-2-Carboxaldehyde Schiff Bases Ashwani Kumar, Pardeep Kumar, Parvin Kumar 9 3. QSAR Studies of 3-(4-(3-(Substitutedphenyl) Acryloyl) Phenyl)-2-Substituted phenyl/Phenylthiazolidin-4-ones for Anticancer Activity Ashwani Kumar, Ruchika Goyal, Sunil Kumar, Sandeep Jain, Parvin Kumar 16 4. In vitro Cytotoxicity of 17-Oxo-5-androsten-3β-yl esters against Liver, Neuroblastoma and Colon Cancer Cell Lines Neelima Dhingra 23 5. Medicinal Chemistry of Nanoparticles for Cancer Theranostics Sandip Zine, Sarita Kunchikorve, Pooja Dubey 28 ContentsResearch & Reviews: A Journal of Drug Design & Discovery
  • 12. RRJoDDD (2016) 1-8 © STM Journals 2016. All Rights Reserved Page 1 Research & Reviews: A Journal of Drug Design & Discovery ISSN: 2349-9036(online) Volume 3, Issue 3 www.stmjournals.com QSAR Studies on Schiff Bases of Pyrrole-2-Carboxaldehyde for Antimicrobial Activity Ashwani Kumar1, *, Pardeep Kumar1 , Parvin Kumar2 1 Department of Pharmaceutical Sciences, Guru Jambheshwar University of Science and Technology, Hisar, Haryana, India 2 Department of Chemistry, Kurukshetra University, Kurukshetra, Haryana, India Abstract Pyrrole and Schiff bases are therapeutically significant organic moieties. QSAR (Quantitative structure-activity relationship) studies of thirteen pyrrole-2-carboxyaldehyde Schiff bases have been described for antimicrobial activity against S. epidermidis, E. coli and S. aureus. Described 2D QSAR models are statistically significant models with good fitting ability and robustness. The Q2 value is more than 0.5 for all discussed models which confirms the internal predictive power of the derived QSAR equations. Molecular weight, autocorrelation descriptors and burden modified eigenvalues descriptors were important in explanation of antimicrobial activity trends. Keywords: Schiff bases, antimicrobial, QSAR, descriptors INTRODUCTION The importance of compounds with heterocyclic nucleus is increasing due to their significant therapeutic actions. Among them, five membered heterocycles containing at least one nitrogen atom have attained special attention of researchers. Pyrrole moiety is present in many compounds possessing various types of activities like antimicrobial [1], antidiabetic [2], anti-inflammatory [3], and anticancer [4]. Some examples of marketed drugs containing pyrrole nucleus are tallimustine, BM 212, atrovastatin, pyrrolomycin B, pyoluteorin and pyrrolnitrin [1]. Schiff bases prepared from heterocyclic moieties possess many pharmacological activities e.g. anticholinesterase [5–7], anti- inflammatory [8], anti-HIV [9], antimicrobial [10], anticonvulsant [11], antifungal [12], antibacterial [13], and antitumor [14]. Preparation of Schiff bases is very easy and these are used as intermediates for synthesis of many important organic molecules [10]. QSAR (Quantitative structure-activity relationship) study is an effective technique to explore the relationship amid pharmacological activity and structural features of the compounds. QSAR tool makes the drug discovery process economic and faster by reducing the cost and time involved. Therefore, developing a QSAR model for biologically active chemicals is an important step for further discovery of novel drugs. 2D QSAR methods are easy to apply and their interpretation is also simple [15]. Inspired by the above facts, we describe herein the QSAR studies for antimicrobial activity of Schiff bases derived from pyrrole-2-carboxyaldehyde reported in literature [10]. QSAR STUDIES Data A dataset of thirteen Schiff bases derived from pyrrole-2-carboxyaldehyde was used for QSAR studies [10]. Structure of Schiff Bases The (2D) structures of the molecules were made using Marvin Sketch (5.10) [16] and optimized as per the reported procedure [15]. Generation of Descriptors For developing a QSAR model, the molecules were represented by molecular properties and these were calculated using PaDEL Descriptor 2.12 program [17]. The constant or near constant parameters were not used. Also, the
  • 13. RRJoDDD (2016) 9-15 © STM Journals 2016. All Rights Reserved Page 9 Research & Reviews: A Journal of Drug Design & Discovery ISSN: 2349-9036(online) Volume 3, Issue 3 www.stmjournals.com Semiempirical Modeling and Docking Studies of Pyrrole-2-Carboxaldehyde Schiff Bases Ashwani Kumar1, *, Pardeep Kumar1 , Parvin Kumar2 1 Department of Pharmaceutical Sciences, Guru Jambheshwar University of Science and Technology, Hisar, Haryana, India 2 Department of Chemistry, Kurukshetra University, Kurukshetra, Haryana, India Abstract Docking stimulation of antimicrobial compound SB7 against the active site of Mandelate racemase has been accomplished. This compound was engaged in various types of interactions with the binding site residues. Further, molecular modeling of all the target compounds was performed using MOPAC 2016 and various parameters were identified. SB1, SB2 and SB5 were found to be most stable compounds and had highest dipole moment. The compound SB8 came out to be most nucleophilic compound while SB10 was least electrophilic. Electrostatic potential surface of all the compounds has also been computed. Keywords: Schiff bases, antimicrobial, docking, MOPAC, PM7 INTRODUCTION Pyrrole-2-carboxyaldehye is a nitrogen containing five membered ring moiety possessing various types of biological activities like anti-inflammatory [1], antimalarial [2], antimicrobial [3], anticancer [4], anticonvulsant [5], antidiabetic [6], antioxidant [7], and anti-HIV [8]. Schiff bases are also known as imines (–N=CH–) or azomethine. These are synthesized by condensation of primary amine with aldehyde or ketone derivatives by removal of water molecule. Schiff bases are generally most widely used organic compounds by which we can form various types of derivatives like intermediates of various organic reactions, polymer stabilizer, pigments, dyes etc. They also exhibit broad spectrum of activities like- antibacterial [9], antifungal [9, 10], anticancer [11], anti-inflammatory [12], anti- candida [13], analgesic [14], antiviral [15], anti TB [16], and anticholinesterase [17–19]. Molecular modeling is an excellent tool to study geometry, electrostatic potential, stability, reactivity and biological properties of chemical moieties. Semiemperical methods have been widely used for these types of studies due to their faster responses and accuracy. MOPAC is excellent software used for performing molecular modeling studies [20]. Molecular docking is a part of molecular modeling used in structure based drug design. It involves anchoring of a ligand (usually small organic compounds, proteins or nucleic acid) into the active site or allosteric sites of the target molecule (protein, nucleic acid). This technique has resulted in discovery of various novel therapeutically active molecules [21]. Schiff bases of pyrrole-2-carboxyaldehyde showed good antimicrobial activity in the test done by us [9]. Molecular modeling and docking studies on these derivatives have not been reported till now. Therefore, in the present study we report molecular modeling studies of all the synthesized compounds and docking stimulation of the most active compound SB7. MATERIALS AND METHODS The structures of the compounds were taken from the literature and are given in Figure 1 and Table 1 [9].
  • 14. RRJoDDD (2016) 16-22 © STM Journals 2016. All Rights Reserved Page 16 Research & Reviews: A Journal of Drug Design & Discovery ISSN: 2349-9036(online) Volume 3, Issue 3 www.stmjournals.com QSAR Studies of 3-(4-(3-(Substitutedphenyl) Acryloyl) Phenyl)-2-Substituted phenyl/Phenylthiazolidin-4-ones for Anticancer Activity Ashwani Kumar1 , Ruchika Goyal1,* , Sunil Kumar1 , Sandeep Jain1 , Parvin Kumar2 1 Department of Pharmaceutical Sciences, Guru Jambheshwar University of Science and Technology, Hisar, Haryana, India 2 Department of Chemistry, Kurukshetra University, Kurukshetra, Haryana, India Abstract Both, Chalcone and 4-thiazolidinone, are therapeutically significant organic moieties with anticancer activities. QSAR (Quantitative structure–activity relationship) studies of ten synthesized chalcone-thiazolidinone hybrids have been described for anticancer activity against three cancer cell lines: A-549 (Human lung adenocarcinoma), U-87 MG (Human glioblastoma cancer cells) and COLO-205 (Human colon cancer cells). The developed linear QSAR models have significant statistical quality showing good fitting ability and robustness. The Q2 and R2 values of all the described models were more than 0.5 which corroborated the internal predictive ability of the resultant QSAR equations. Wlambda3.mass, SC-3, FNSA-3, BCUTp-1l, Wlambda1.unity descriptors were imperative in elucidation of anticancer activity trends. Keywords: Chalcone-thiazolidinone hybrids, anticancer activity, cell lines, QSAR INTRODUCTION Cancer is the main cause of death in economically developed countries and the second leading cause of death in developing countries. The global burden of cancer continues to increase largely because of the aging and growth of the world population along with an increasing adoption of cancer- causing behaviors, particularly smoking, in economically developing countries [1]. Heterocyclic compounds containing sulphur and nitrogen, especially thiazolidinones, have been widely explored for their applications in the field of medicine. The 4-thiazolidinone nucleus forms the heart of numerous biologically active chemical compounds. Some of the representatives of this heterocyclic systems exhibit: antitumor, anti- inflammatory, antibacterial, analgesic and antihyperglycaemic activity [2–4]. Chalcone is an aromatic ketone, generally derivative of phenyl styryl ketone. These are abundant in plants and are considered to be precursors of flavonoids and isoflavonoids [5]. The broad and potent activity of chalcones has established it as one of the most therapeutically vital scaffold [6]. Some researchers have synthesized thiazolidinones and chalcones with a variety of biological activities [7]. Therefore, looking at the importance of these two moieties, we accommodated the chalcones with 4- thiazolidinone nucleus in our previous work [8]. Quantitative Structure Activity Relationship (QSAR) technique has been effectively used for screening of the potential drugs. This approach is used to study the relationship between the activity and structure of the compounds in a mathematical way. This technique uses calculated or experimental molecular descriptors of the compounds as independent variables along with the biological activity as dependent variable. Multidimensional QSAR techniques have been reported in the literature [9–11]. Considering these facts, we describe herein, the linear QSAR studies of 3-(4-(3
  • 15. RRJoDDD (2016) 23-27 © STM Journals 2016. All Rights Reserved Page 23 Research & Reviews: A Journal of Drug Design & Discovery ISSN: 2349-9036(online) Volume 3, Issue 3 www.stmjournals.com In vitro Cytotoxicity of 17-Oxo-5-androsten-3β-yl esters against Liver, Neuroblastoma and Colon Cancer Cell Lines Neelima Dhingra* Department of Pharmaceutical Chemistry, University Institute of Pharmaceutical Sciences, Panjab University, Chandigarh, Panjab, India Abstract A tumor is abnormal growth of body tissue and steroidal derivatives represent a distinct class of antineoplastic agents. Positioning of the oxo group on the parental steroid skeleton has significant effect on the antineoplastic activity profile of the compounds. Recent work from our laboratory has also demonstrated the effectiveness of 17-oxo-5-androsten-3β-yl ester derivatives as potential antiproliferative agents and 5-alpha reductase inhibitors. The current study was undertaken to investigate the cytotoxicity using sulforhodamine B dye (SRB ) assay of the synthesized derivative against six more human cancer cell lines at the 1X 10-5 m (single dose). Keywords: Cytotoxicity, Human cancer cell lines, Steroids, Sulphorodamine B6 INTRODUCTION Neoplasm is described by abnormal increase in the number of cells, which may result not only from increased cell proliferation but also from decreased level in programmed cell death (apoptosis) [1]. Cells die in response to development signals, and the process is characterized by number of biochemical changes. Any influence between the physiological process of cell proliferation and cell death may lead to change in organ size with the subsequent development of abnormalities in particular organ [2]. So it is reasonable to assume that cytotoxic agents act by killing the cells or by preventing the cell proliferation, thus are useful for the treatment of disease that involve abnormal or uncontrolled cell proliferation. The steroid system, selected by the evolutionary process to perform some of the most fundamental biological functions, has not only inspired the biochemists and endocrinologists, but has also become the basis of the most phenomenal developments in medicinal chemistry. Naturally occurring steroids have been modified at different positions to get active molecule which show less or few undesirable side-effect. Number of investigators have synthesized and reported cyano-progesterone (1), methylene homologue derivatives (2a-2d) and 16-substituted progesterone derivatives (3) as potent cytotoxics and five alpha reductase inhibitors [3–5]. Studies have revealed that the location of the heteroatom or change in the position of any group on the parent steroid skeleton affects the cytotoxicity profile of the compounds, as exemplified by the synthesis of D homo progesterone (4) (Figure 1) [6]. Recent work from our laboratory described the synthesis of esters of 17-oxo-5- androsten 3β-ol and their evaluation as antiproliferative agents and 5-alpha reductase inhibitors [7]. This group of steroids has displayed significant antiproliferative activity as compared to reference drug finasteride, against human
  • 16. RRJoDDD (2016) 28-41 © STM Journals 2016. All Rights Reserved Page 28 Research & Reviews: A Journal of Drug Design & Discovery ISSN: 2349-9036(online) Volume 3, Issue 3 www.stmjournals.com Medicinal Chemistry of Nanoparticles for Cancer Theranostics Sandip Zine*, Sarita Kunchikorve, Pooja Dubey Pharmaceutical Chemistry, Vivekanand Education Society's College of Pharmacy, Chembur, Mumbai, Maharashtra, India Abstract Cancer is a disease in which cells growth is uncontrollable and conventional treatment have a few side effects, for example, nonspecific delivery, unable to enter the center of tumor and absence of solubility. Nanoparticles could directly target disease cells specifically and increased medication localization in tumor cells giving exact cellular uptake. The theranostic nanomedicine can accomplish systemic flow, avoid host resistances and deliver the medication and diagnostic agents at the target site to analyze and treat the tumor at cellular and molecular level; in short it is a combination of therapeutic and diagnostic agent. Gold nanoparticles, quantum dots are used as nanotheranostics. These agents act by passive and active targeting on cancerous cells. Synthesis of nanotheranostic is also discussed. Keywords: Cancer, Nanotheranostics, Quantum dots, Gold nanoparticle INTRODUCTION Cancer is a disease in which abnormal cells divide without control and have capability to invade other tissues. Cancer is caused by changes to genes which control the way our cell function, specifically how they grow and divide. Cancer cells are formed due to changes in DNA. Cells experience uncontrolled growth when there are mutations to DNA and therefore, alterations to the genes involved in cell division. There are four types of genes involved in cell division process: oncogenes instructs cells when to divide, tumor suppressor genes instructs cells when not to divide, suicide genes control apoptosis and make cells to kill itself if something goes wrong and DNA repair genes tell a cell to repair damaged DNA. Carcinogenes are substances that are directly responsible for damaging DNA, promoting or aiding cancer. Tobacco, asbestos, arsenic, radiations such as x-rays, gamma, sun and compounds involved in car exhaust fumes these are the examples of carcinogenes. When our bodies are exposed to carcinogenes, free radicals are formed which try to steal electrons from other molecules present in the body. These free radicals damages cells and therefore, affect their ability to function normally.
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