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Comparison of Different Clustering Algorithms using WEKA Tool Priya Kakkar, Anshu Parashar
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Ijartes v1-i2-006
1.
International Journal of
Advanced Research in Technology, Engineering and Science (A Bimonthly Open Access Online Journal) Volume1, Issue2, Sept-Oct, 2014.ISSN:2349-7173(Online) Comparison of Different Clustering Algorithms using WEKA Tool Priya Kakkar1, Anshu Parashar2 ______________________________________________ Abstract: Data Mining is a process of extracting useful information from a large dataset and Clustering is one of important technique in data mining process, whose main purpose is to group data of similar types into clusters and finding a structure among unlabelled data. In this paper we have taken four different clustering algorithm i.e. K-Mean algorithm, Hierarchical algorithm, Density based algorithm, EM algorithm. All these algorithms are applied on data of egit software repositories and depends or dependent classes. In this paper to compare and analyze these four algorithms with respect to time to build a model, cluster instances, squared errors and log likelihood by using Weka tool. _________________________________________________ Keywords: Data Mining, Clustering, K-mean, Weka tool, DBSCAN __________________________________________________ I.INTRODUCTION Data mining is a field used to find out the data hidden in your clusters of data or massive set of data. Data mining is an important tool to convert the data into information. It is used in a different field of practices, such as marketing, fraud detection and scientific discovery. Data mining is the also used for extracting patterns from data. It can be used to uncover patterns in data but is often carried out only on sample of data. The mining process will be ineffective if the samples are not good representation of the larger body of the data. The discovery of a particular pattern in a particular set of data does not necessarily mean that pattern is found elsewhere in the larger data from which that sample was drawn. An important part of the method is the verification and validation of patterns on other samples of data. A primary reason for using data mining is to assist in the analysis of collection of observations of behavior. Data mining is the analysis step of the "Knowledge Discovery in Databases" process and is the process that attempts to discover patterns from large data sets. The main aim of the data mining process is to extract information from a data set and transform it into an understandable format for further use. ________________________________________________ First Author’s Name: Priya Kakkar, Department of Computer Science & Engineering, HCTM Technical Campus, Kaithal, India. Second Author’s Name: Anshu Parashar, Department of Computer Science & Engineering, HCTM Technical Campus, Kaithal, India. __________________________________________________________ Clustering is the task of assigning a set of objects into groups (called clusters) so that the objects in the same cluster are more similar to each other than to those in other clusters. A cluster is therefore a collection of objects which are “similar” between them and are “dissimilar” to the objects belonging to other clusters. Clustering is a common technique used for statistical data analysis in many fields like machine learning, pattern recognition, image analysis, information retrieval, and bioinformatics. II.CLUSTERING METHODS The goal of clustering is to organize objects which are related to each other or have similar characteristics. Clustering groups similar objects (item) into same group. We use different methods for clustering. · Partitioning clustering The partitioning method uses a set of M clusters and each object belongs to one cluster. Each cluster can be represented by a centroid or a cluster representative; that is a description of all the objects contained in a cluster. This description will depend on the type of the object which is clustered. In real-valued data the arithmetic mean of the attribute vectors for all objects within a cluster provides an appropriate representative while alternative types of centroid may be required in other cases. If the number of the clusters is large then centroid can be further clustered which produces hierarchy within a dataset. · Hierarchical clustering Flat clustering is efficient and conceptually simple but it has a number of drawbacks. The algorithms require a pre-specified number of clusters as input and are nondeterministic. Hierarchical clustering outputs a hierarchical structure that is more informative than the unstructured set of clusters formed by flat clustering. Hierarchical clustering also does not need to specify the number of clusters in advance. In hierarchical clustering clusters are created either by top-down or bottom-up fashion by recursive partitioning. Hierarchical clustering are of two types: - Hierarchical Agglomerative methods, Hierarchical Divisive clustering. · Density based clustering Density-based clustering algorithms try to find clusters based on density of data points in a region. The key idea behind density-based clustering is that for each instance of a cluster the neighborhood of a given radius (Eps) has to contain at least a minimum number of instances (MinPts). Density based clustering is based on probability distribution and points from All Rights Reserved © 2014 IJARTES Visit: www.ijartes.org Page 20
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International Journal of
Advanced Research in Technology, Engineering and Science (A Bimonthly Open Access Online Journal) Volume1, Issue2, Sept-Oct, 2014.ISSN:2349-7173(Online) one distribution are assumed to be part of one cluster. This method identifies the clusters and their parameters. IV.VARIOUS CLUSTARING ALGORITHMS · k-mean clustering K-means is a widely used partition based clustering method because it can be easily implemented and most efficient one in terms of the execution time. k-mean clustering group items into k groups. This grouping is done on the basis of minimizing the sum of squared distances between items and the corresponding centroid. A centroid is "center of mass of a geometric object of uniform density". K-Means Algorithm: In k-mean algorithm each cluster’s center is represented by mean value of objects in the cluster. Input: k: the number of clusters. D: data set containing n objects. Output: A set of k clusters. Method: 1. Arbitrarily choose k objects from D as the initial cluster centers. 2. Repeat. 3. Reassign each object to the cluster to which the object is most similar based on the mean value of the objects in the cluster. 4. Update the cluster means. 5. until no change. · EM algorithm In cases where the equations cannot be solved directly we use a special algorithm known as The EM algorithm. EM stands for Expectation and Maximization which is part of data mining tools.The EM algorithm is used to find most likelihood parameters in a model. These models Contains latent variable and use likelihood functions in addition to unknown parameters and known data observations. It contains either missing value among the data, or the model can be simplified by assuming the existence of additional unobserved data points. To find out solutions it requires taking derivatives of likelihood functions with respect to all unknown values. The result is typically a set of interlocking equations in which the solution to the parameters requires the values of the latent variables and vice-versa, but substituting one set of equations into the other produces an unsolvable equation. EM algorithm pick arbitrarily values for one of sets and use these values to estimate the second set then use these values to estimate first set and this will continue until the resulting values converge to fixed points. · Density-based spatial clustering of applications with noise (DBSCAN) Algorithm Density based spatial clustering of application with noise is one of Density based algorithm. It separates data points into three parts: Core points (points that are at the interior of a cluster), Border points (points which fall within neighborhood of core point) and Noise points (point that is not a core point or a border point).DBSCAN starts with an arbitrary instance (p) in data set (D) and finds all values of D within Eps and MinPts. The algorithm uses a spatial data structure to place points within Eps from the core points of the clusters. It starts with an arbitrary starting point that has not been visited and point’s Eps-neighborhood is found out and if it contains sufficiently many points, a cluster is started. Otherwise, point is recognized as noise. This point might later be found within Eps-environment of a different point and hence it’s to made part of a cluster. If a point is found a dense part of a cluster then its Eps-neighborhood is also part of that cluster. Hence, all points which are found within the Eps-neighborhood are also added like their own Eps-neighborhood when they are dense. This process continues until the density-connected cluster is completely found. Then, a new unvisited point found out and processed which leads to the discovery of a further cluster or noise. V.EXPERIMENTAL SETUP In our work for the comparison of various clustering algorithms we used Weka tool. Weka is one of data-mining tool which contains a collection of machine learning algorithms. Weka contains tools for pre-processing, classification, regression, clustering, association rules, and visualization of data. In our work we made a dataset of egit software form the pfCDA software and svnsearch.org site. Dataset consists of three attributes class, depends and change. Classes with similar characteristics are grouped. We created database using Excel work-sheet in a .CSV file format. For our work we made an .arff file format from the .CSV file format. In our work we compared four clustering algorithms (K-mean, Hierarchal, EM, Density based) on the basis of Number of cluster, Cluster instances, Square error, Time taken to build model and Log likelihood. We showed training set, classes to cluster evaluation and visualization of cluster in our work. We used these algorithms one by one in weka tool and found their results and made a comparison table. V1.RESULTS ANALYSIS From Weka tool we found results using all algorithms that are shown in table4.1. This comparison table shows that for similar clustered data these algorithms give different results. Form this comparison table we find that k-mean algorithm provides better results than hierarchical and EM algorithm. It has better time for building a model than hierarchical and EM but it takes more time than Density based algorithms. We also find that log likelihood value of density based algorithm is higher. Form result we find that k-mean is a faster and safer algorithm than other algorithms we used. All Rights Reserved © 2014 IJARTES Visit: www.ijartes.org Page 21
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International Journal of
Advanced Research in Technology, Engineering and Science (A Bimonthly Open Access Online Journal) Volume1, Issue2, Sept-Oct, 2014.ISSN:2349-7173(Online) Name of algorithm Numbe r of cluster Cluster instance s Squar e error Time taken to build model Log likelihoo d k-mean 4 30% 602 0.03 secon d 28% 22% 20% Hierarch al 4 52% 0.19 secon d 1% 27% 20% EM 4 30% 2.68 secon d -11.9224 20% 22% 28% Density based 4 30% 0.02 secon d -11.8997 28% 22% 20% Table 4.1: Result of comparison of four clustering algorithms VII.CONCLUSION k-mean, EM, density based clustering algorithm have same clustered instances, but EM algorithm take more time to build cluster that’s why k-mean and density based algorithm are better than EM algorithm. Density based algorithm take less time to build a cluster but it does not better than the k-mean algorithm because density based algorithm has high log likelihood value, if the value of log likelihood is high than it doesn’t make good cluster. Hence k-mean is best algorithm because it takes very less time to build a model. Hierarchal algorithm take more time than k-mean algorithm and cluster instances are also not good in hierarchal algorithm. REFERENCES [1] A Hinneburg and D. Keim, "An Efficient Approach to Clustering in Large Multimedia Databases with Noise”, Proceedings of KDD-98 (1998). [2] Aastha Joshi and Rajneet Kaur “Comparative Study of Various Clustering Techniques in Data Mining” (2013). [3] Bharat Chaudhari, Manan Parikh “A Comparative Study of clustering algorithms Using weka tools” (2012) [4] Bhoj Raj Sharmaa and Aman Paula “Clustering Algorithms: Study and Performance Evaluation Using Weka Tool” (2013). [5] Charalampos Mavroforaki “Data mining with WEKA”. [6] Clifton and Christopher, “Encyclopaedia Britannica: Definition of data mining”, Retrieved 2010-12-09, 2010. [7] David Scuse and Peter Reutemann”WEKA Experimenter Tutorial for Version 3-5-5” [8] Daljit Kaur, Kiran Jyoti “Enhancement in the Performance of K-means Algorithm” (2013) [9] Ester M., Kriegel HP., Sander J and Xu X,“A density-based algorithm for discovering clusters in largespatial databases with noise”,Second International Conference on Knowledge Discovery and Data Mining, 1996. [10] Fayyad, Usama, Gregory Piatetsky, Shapiro and Padhraic Smyth "From Data Mining to Knowledge Discovery in Databases", Retrieved 2008-12-17, 1996. [11] Gengxin Chen, Saied A. Jaradat, Nila Banerjee “EVALUATION AND COMPARISON OF CLUSTERING ALGORITHMS IN ANGLYZING ES CELL GENE EXPRESSION DATA” (2002) [12] M. Ankerst, M. Breunig, H.P. Kriegel and J. Sander, “OPTICS: Ordering Points To Identify the Clustering Structure”, Proceedings of ACM SIGMOD ‘99, International Conference on Management of Data, Philadelphia, pp. 49-60, 1999. [13] Michael Steinbach George Karypis Vipin Kumar “A Comparison of Document Clustering Techniques” [14] Narendra Sharma, Aman Bajpai, Mr. Ratnesh Litoriya “Comparison the various clustering algorithms of weka tools” (2012). [15] Pallavi, Sunila Godara “A Comparative Performance Analysis of Clustering Algorithms”. [16] Prajwala T R1, Sangeeta V I “Comparative Analysis of EM Clustering Algorithm and Density Based Clustering Algorithm Using WEKA tool.” (2014). [17] Sonam Narwal and Mr. Kamaldeep Mintwal “Comparison the Various Clustering and Classification Algorithms of WEKA Tools” (2013) [18] T.Balasubramanian, R.Umarani “Clustering as a Data Mining Technique in Health Hazards of High levels of Fluoride in Potable Water” (2012). [19] Vishal Shrivastava, Prem narayan Arya “A Study of Various Clustering Algorithms on Retail Sales Data” (2012) All Rights Reserved © 2014 IJARTES Visit: www.ijartes.org Page 22
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