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By: Kainat Ramzan
M.Phil BioChemistry
Department of Biochemistry
1
Virus:
 Viruses are small obligate intracellular parasites which contain either a RNA or
DNA.
 Viruses are classified on the basis of morphology, chemical composition, and
mode of replication.
 Virion morphology including size, shape, type of symmetry etc
 Virus genome properties, including type of nucleic acid either DNA or RNA
 Genome organization and replication.
 Antigenic properties
 Physicochemical properties of the virion including molecular mass etc
Size of Virus:
Reason beyond classification
Before Discovery:
Classification of Viruses
On the basis of genetic material
The nucleic acid may be single or double stranded, circular or linear, segmented or
unsegmented. They are classified as DNA viruses and RNA viruses
1. DNA viruses
• DNA as their genetic material.
• Example: parvovirus, papillomavirus, and herpesvirus
2. RNA viruses
DNA viruses cause human diseases, such as chickenpox, hepatitis B. They possess RNA as
genetic material
Single-stranded or double-stranded , positive-sense and negative-sense RNA viruses
These RNA polymerase enzymes are more likely to make copying errors than DNA
polymerases, and therefore often make mistakes during transcription
Human diseases caused by RNA viruses include hepatitis C, measles, and rabies
3.DNA-RNA viruses
The RNA tumor viruses called Leukoviruses and Rous’s viruses unusually contain both
DNA and RNA as genetic material
On the basis of presence of number of strands
 Double-stranded DNA
It is found in pox viruses, the bacteriophages herpes viruses, adenoviruses etc.
 Single-stranded DNA
It is found in bacteriophages.
 Double-stranded RNA
It has been found within viral capsid in the reoviruses of animals and in the
wound tumour virus.
 Single-stranded RNA
It is found in most of the RNA viruses
- tobacco mosaic virus, influenza virus etc.
On the basis of presence of envelope
1. Non – enveloped viruses
A non-enveloped animal virus that causes respiratory illnesses in humans,
uses glycoprotein spikes protruding from its capsomeres to attach to host
cells.
Adenovirus, poliovirus are example of it
2. Enveloped virus
Glycoproteins embedded in the viral envelope are used to attach to host
cells Chicken pox, influenza, and mumps are examples of diseases caused
by viruses with envelopes.
Because of the fragility of the envelope, non-enveloped viruses are more
resistant to changes in temperature, pH
On the basis of Capsid structure:
All virions have a nucleic acid genome covered by a protective layer of proteins called
a capsid
Capsid is the protein shell that encloses the nucleic acid with its enclosed nucleic acid
called as Nucleocapsid
Shell is composed of protein organized in subunits known as Capsomers
Protects the nucleic acid from digestion by enzymes,
Contains special sites on its surface that allow the virion to attach to a host cell,
Provides proteins that enable to penetrate the host cell membrane and to inject the
infectious nucleic acid into the cell's cytoplasm
 Filamentous viruses are long and cylindrical
Many plant viruses are filamentous, including TMV
 Isometric viruses have shapes that are roughly spherical,
- such as poliovirus or herpesviruses
 Enveloped viruses have membranes surrounding capsid
- Animal viruses, such as HIV
 Head and tail viruses infect bacteria and
- have a head ---similar to icosahedral viruses
- a tail shape like filamentous viruses
 Complex with many Proteins: some have combinations of icosahedral and helical
capsid structures.
-Herpesviruses, smallpox virus,
- hepatitis B virus, T4 bacteriophage
On the Basis of Shapes of the Viruses
Rabies Lyssavirus commonly known as the Rabies virus (RABV)
Bullet-shaped, neurotropic virus
Composed of an internal protein core or nucleocapsid containing the nucleic acid,
and an outer envelope,
Lipid-containing bilayer covered with transmembrane glycoprotein spikes.
Negative-sense, non-segmented, single-stranded RNA virus and approximately 60
nm × 180 nm
Ebola Virus
Negative-sense, non-segmented, single stranded linear RNA genome about 18-19 kb
in size, contains approximately 19,000 base pairs
Nucleoprotein (NP), polymerase cofactor (VP35), (VP40), GP, transcription
activator (VP30), VP24, and RNA polymerase (L)
Cylindrical, tubular, and contain viral envelope, matrix and nucleocapsid components
Poxviruses
Brick-shaped (240 nm by 300 nm) and have a complex internal structure
Double-stranded DNA genome (130–260 kb) and associated enzymes
Adenoviruses
Medium-sized (90-100 nm),
non-enveloped icosohedral viruses with double-stranded DNA
The shell, which is 70 to 100 nm in diameter, is made up of
252 structural capsomeres
Adenovirus is Space vehicle shaped
Classification of Virus on the Basis of Structure
Cubical virus:
They are also known as icosahedral symmetry virus.
Polygon with 12 vertices (corner), 20 facet (sides) and 30 edges
E.g; Adenovirus, Picornavirus, Papovavirus, herpes virus
Spiral virus:
They are also known as helical symmetry virus
The capsomere and nucleic acid are wined together to form helical or spiral tube
like structure
Helical viruses are enveloped and all are RNA viruses with 2130 identical
capsomeres
E.g; Paramyxovirus, orthomyxovirus
Radial symmetry virus is Bacteriophage virus
Complex virus like Pox virus
On the basis of type of host
Animal Viruses
Viruses which infect and live inside the animal cell
Influenza virus, mumps virus, poliovirus
Genetic material --- RNA or DNA
Plant Viruses
The viruses that infect plants
Genetic material is RNA
- remains enclosed in the protein coat
Tobacco mosaic virus, potato virus, beet yellow virus
Bacteriophages
Viruses which infect bacterial cells
DNA as genetic material
Each kind of bacteriophage will attack only single specie
On the basis of mode of transmission
 Virus transmitted through respiratory route
- Swine flu, Rhino virus
 Virus transmitted through fecal oral route
- Hepatitis A virus, Polio virus, Rota virus
 Virus also transmitted through blood transfusion
- Hepatitis B virus, HIV
 Zoonotic virus which transmitted through biting of infected animals
- Rabies virus, Alpha virus
On the Basis of Replication Properties and Site of
Replication
All RNA virus replicate and assemble in cytoplasm of host cell except
Influenza virus
Some virus Replicate in nucleus and assemble in cytoplasm of host like
Influenza virus, Pox virus
Some Replicate and assemble in nucleus of host like All DNA viruses
replicate and assemble in nucleus of host cell except Pox virus.
Virus also replicate through double stranded DNA intermediate like all DNA
virus, and some tumor causing RNA virus replicates through dsDNA.
Some Virus replicate through single stranded RNA intermediate like All RNA
virus except Reo virus and tumor causing RNA viruses
Baltimore classification
The most commonly used system of virus classification was developed by Nobel Prize-
winning biologist David Baltimore in the early 1970s.
The Baltimore classification scheme groups viruses according to how the mRNA is
produced during the replicative cycle of the virus
The most commonly used classification method today is called the Baltimore
classification scheme and is based on how messenger RNA (mRNA) is generated in each
particular type of virus
Group I
viruses contain double-stranded DNA (dsDNA) as their genome.
Their mRNA is produced by transcription in much the same way as with cellular DNA
Group II
viruses have single-stranded DNA (ssDNA) as their genome.
They convert their single-stranded genomes into a dsDNA intermediate before
transcription to mRNA can occur
Group III
viruses use dsRNA as their genome. The strands separate, and one of them is
used as a template for the generation of mRNA using the RNA-dependent RNA
polymerase encoded by the virus
Group IV
Viruses have ssRNA as their genome with a positive polarity. Positive
polarity means that the genomic RNA can serve directly as mRNA.
Intermediates of dsRNA, called replicative intermediates, are made in the
process of copying the genomic RNA
Group V
Viruses contain ssRNA genomes with a negative polarity, meaning that their
sequence is complementary to the mRNA. In this case, the negative-stranded
genome can be converted directly to mRNA.
Additionally, full-length positive RNA strands are made to serve as templates for
the production of the negative-stranded genome
Group VI
Viruses have diploid (two copies) ssRNA genomes that must be converted,
using the enzyme reverse transcriptase, to dsDNA; the dsDNA is then
transported to the nucleus of the host cell and inserted into the host genome.
Then, mRNA can be produced by transcription of the viral DNA that was
integrated into the host genome
Group VII
Viruses have partial dsDNA genomes and make ssRNA intermediates that act
as mRNA, but are also converted back into dsDNA genomes by reverse
transcriptase, necessary for genome replication.
Baltimore Classification
22

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Virus classification by kainat ramzan

  • 1. By: Kainat Ramzan M.Phil BioChemistry Department of Biochemistry 1
  • 2. Virus:  Viruses are small obligate intracellular parasites which contain either a RNA or DNA.  Viruses are classified on the basis of morphology, chemical composition, and mode of replication.  Virion morphology including size, shape, type of symmetry etc  Virus genome properties, including type of nucleic acid either DNA or RNA  Genome organization and replication.  Antigenic properties  Physicochemical properties of the virion including molecular mass etc
  • 6. On the basis of genetic material The nucleic acid may be single or double stranded, circular or linear, segmented or unsegmented. They are classified as DNA viruses and RNA viruses 1. DNA viruses • DNA as their genetic material. • Example: parvovirus, papillomavirus, and herpesvirus 2. RNA viruses DNA viruses cause human diseases, such as chickenpox, hepatitis B. They possess RNA as genetic material Single-stranded or double-stranded , positive-sense and negative-sense RNA viruses These RNA polymerase enzymes are more likely to make copying errors than DNA polymerases, and therefore often make mistakes during transcription Human diseases caused by RNA viruses include hepatitis C, measles, and rabies 3.DNA-RNA viruses The RNA tumor viruses called Leukoviruses and Rous’s viruses unusually contain both DNA and RNA as genetic material
  • 7. On the basis of presence of number of strands  Double-stranded DNA It is found in pox viruses, the bacteriophages herpes viruses, adenoviruses etc.  Single-stranded DNA It is found in bacteriophages.  Double-stranded RNA It has been found within viral capsid in the reoviruses of animals and in the wound tumour virus.  Single-stranded RNA It is found in most of the RNA viruses - tobacco mosaic virus, influenza virus etc.
  • 8. On the basis of presence of envelope 1. Non – enveloped viruses A non-enveloped animal virus that causes respiratory illnesses in humans, uses glycoprotein spikes protruding from its capsomeres to attach to host cells. Adenovirus, poliovirus are example of it 2. Enveloped virus Glycoproteins embedded in the viral envelope are used to attach to host cells Chicken pox, influenza, and mumps are examples of diseases caused by viruses with envelopes. Because of the fragility of the envelope, non-enveloped viruses are more resistant to changes in temperature, pH
  • 9. On the basis of Capsid structure: All virions have a nucleic acid genome covered by a protective layer of proteins called a capsid Capsid is the protein shell that encloses the nucleic acid with its enclosed nucleic acid called as Nucleocapsid Shell is composed of protein organized in subunits known as Capsomers Protects the nucleic acid from digestion by enzymes, Contains special sites on its surface that allow the virion to attach to a host cell, Provides proteins that enable to penetrate the host cell membrane and to inject the infectious nucleic acid into the cell's cytoplasm  Filamentous viruses are long and cylindrical Many plant viruses are filamentous, including TMV  Isometric viruses have shapes that are roughly spherical, - such as poliovirus or herpesviruses  Enveloped viruses have membranes surrounding capsid - Animal viruses, such as HIV
  • 10.  Head and tail viruses infect bacteria and - have a head ---similar to icosahedral viruses - a tail shape like filamentous viruses  Complex with many Proteins: some have combinations of icosahedral and helical capsid structures. -Herpesviruses, smallpox virus, - hepatitis B virus, T4 bacteriophage
  • 11. On the Basis of Shapes of the Viruses Rabies Lyssavirus commonly known as the Rabies virus (RABV) Bullet-shaped, neurotropic virus Composed of an internal protein core or nucleocapsid containing the nucleic acid, and an outer envelope, Lipid-containing bilayer covered with transmembrane glycoprotein spikes. Negative-sense, non-segmented, single-stranded RNA virus and approximately 60 nm × 180 nm Ebola Virus Negative-sense, non-segmented, single stranded linear RNA genome about 18-19 kb in size, contains approximately 19,000 base pairs Nucleoprotein (NP), polymerase cofactor (VP35), (VP40), GP, transcription activator (VP30), VP24, and RNA polymerase (L) Cylindrical, tubular, and contain viral envelope, matrix and nucleocapsid components
  • 12. Poxviruses Brick-shaped (240 nm by 300 nm) and have a complex internal structure Double-stranded DNA genome (130–260 kb) and associated enzymes Adenoviruses Medium-sized (90-100 nm), non-enveloped icosohedral viruses with double-stranded DNA The shell, which is 70 to 100 nm in diameter, is made up of 252 structural capsomeres Adenovirus is Space vehicle shaped
  • 13. Classification of Virus on the Basis of Structure Cubical virus: They are also known as icosahedral symmetry virus. Polygon with 12 vertices (corner), 20 facet (sides) and 30 edges E.g; Adenovirus, Picornavirus, Papovavirus, herpes virus Spiral virus: They are also known as helical symmetry virus The capsomere and nucleic acid are wined together to form helical or spiral tube like structure Helical viruses are enveloped and all are RNA viruses with 2130 identical capsomeres E.g; Paramyxovirus, orthomyxovirus Radial symmetry virus is Bacteriophage virus Complex virus like Pox virus
  • 14. On the basis of type of host Animal Viruses Viruses which infect and live inside the animal cell Influenza virus, mumps virus, poliovirus Genetic material --- RNA or DNA Plant Viruses The viruses that infect plants Genetic material is RNA - remains enclosed in the protein coat Tobacco mosaic virus, potato virus, beet yellow virus Bacteriophages Viruses which infect bacterial cells DNA as genetic material Each kind of bacteriophage will attack only single specie
  • 15.
  • 16. On the basis of mode of transmission  Virus transmitted through respiratory route - Swine flu, Rhino virus  Virus transmitted through fecal oral route - Hepatitis A virus, Polio virus, Rota virus  Virus also transmitted through blood transfusion - Hepatitis B virus, HIV  Zoonotic virus which transmitted through biting of infected animals - Rabies virus, Alpha virus
  • 17. On the Basis of Replication Properties and Site of Replication All RNA virus replicate and assemble in cytoplasm of host cell except Influenza virus Some virus Replicate in nucleus and assemble in cytoplasm of host like Influenza virus, Pox virus Some Replicate and assemble in nucleus of host like All DNA viruses replicate and assemble in nucleus of host cell except Pox virus. Virus also replicate through double stranded DNA intermediate like all DNA virus, and some tumor causing RNA virus replicates through dsDNA. Some Virus replicate through single stranded RNA intermediate like All RNA virus except Reo virus and tumor causing RNA viruses
  • 18. Baltimore classification The most commonly used system of virus classification was developed by Nobel Prize- winning biologist David Baltimore in the early 1970s. The Baltimore classification scheme groups viruses according to how the mRNA is produced during the replicative cycle of the virus The most commonly used classification method today is called the Baltimore classification scheme and is based on how messenger RNA (mRNA) is generated in each particular type of virus Group I viruses contain double-stranded DNA (dsDNA) as their genome. Their mRNA is produced by transcription in much the same way as with cellular DNA Group II viruses have single-stranded DNA (ssDNA) as their genome. They convert their single-stranded genomes into a dsDNA intermediate before transcription to mRNA can occur
  • 19. Group III viruses use dsRNA as their genome. The strands separate, and one of them is used as a template for the generation of mRNA using the RNA-dependent RNA polymerase encoded by the virus Group IV Viruses have ssRNA as their genome with a positive polarity. Positive polarity means that the genomic RNA can serve directly as mRNA. Intermediates of dsRNA, called replicative intermediates, are made in the process of copying the genomic RNA Group V Viruses contain ssRNA genomes with a negative polarity, meaning that their sequence is complementary to the mRNA. In this case, the negative-stranded genome can be converted directly to mRNA. Additionally, full-length positive RNA strands are made to serve as templates for the production of the negative-stranded genome
  • 20. Group VI Viruses have diploid (two copies) ssRNA genomes that must be converted, using the enzyme reverse transcriptase, to dsDNA; the dsDNA is then transported to the nucleus of the host cell and inserted into the host genome. Then, mRNA can be produced by transcription of the viral DNA that was integrated into the host genome Group VII Viruses have partial dsDNA genomes and make ssRNA intermediates that act as mRNA, but are also converted back into dsDNA genomes by reverse transcriptase, necessary for genome replication.
  • 22. 22