Specimen quality is important for accurate diagnosis and treatment. Laboratories must develop good relationships with healthcare providers to ensure high quality specimens. Sputum is the preferred respiratory specimen for tuberculosis testing and should be thick, mucopurulent, and at least 3 mL in volume. Extrapulmonary specimens can also be tested for tuberculosis from sterile and non-sterile sites. All mycobacteria specimens require special handling and transport according to regulations to maintain specimen integrity and prevent exposure. Processing involves digestion, decontamination, and concentration to reduce normal flora and recover mycobacteria for testing.
casoni test is an immediate hypersensitivity skin test previously used in the diagnosis of hydatid disease.
Intradermal injection of 0.2ml of hydatid fluid collected from animal/human cyst which is sterilized by seitz filtration OR membrane filtration.
equal volume of saline(control) injected on the other forearm and observation made for next 30 min and after 1 to 2 days.
As a precaution anaphylactic tray must be kept ready before carrying out the test.(Type 1 hypersensitivity reaction)
Interpretation: Sensitive patients develop large wheal measuring 5 cm or more with formation of pseudopodia like projection within 30 minutes occuring at injection site, considered positive result.(immediate hypersensitivity) .
No reaction in the control arm.
Disadvantage: It has low sensitivity (60-80%)
and gives false positive results in cross reactive cestode infections.
It is no longer used nowadays and replaced largely by the serological tests.
Less reliable than imaging technique.
casoni test is an immediate hypersensitivity skin test previously used in the diagnosis of hydatid disease.
Intradermal injection of 0.2ml of hydatid fluid collected from animal/human cyst which is sterilized by seitz filtration OR membrane filtration.
equal volume of saline(control) injected on the other forearm and observation made for next 30 min and after 1 to 2 days.
As a precaution anaphylactic tray must be kept ready before carrying out the test.(Type 1 hypersensitivity reaction)
Interpretation: Sensitive patients develop large wheal measuring 5 cm or more with formation of pseudopodia like projection within 30 minutes occuring at injection site, considered positive result.(immediate hypersensitivity) .
No reaction in the control arm.
Disadvantage: It has low sensitivity (60-80%)
and gives false positive results in cross reactive cestode infections.
It is no longer used nowadays and replaced largely by the serological tests.
Less reliable than imaging technique.
Wuchereria Bancrofti, the adult worm or parasites and its embryo microfilariae . The studies of microbiology. Its about Introduction, morphology, life cycle, pathogenesis, diagnosis and treatment
Data is collected and this ppt is Created by Sweta Chaudhary. All rights are reserved to her. Contact vivekchaudhary.707@gmail.com for more inquiry. Thank you ...
Direct
Passive
Reverse Passive
Agglutination Inhibition
Coagglutination
Agglutination tests can be done :
On slides
In tubes
In microtritation plates
-Difference between precipitation and agglutination reaction.
A brief presentation for second-year students in Iraqi Technical Institutes (studying Medical Laboratory Technology). This introduction covers the types of blood samples, how to collect these samples, common sites for collection, and anticoagulants in a test-tubes.
Wuchereria Bancrofti, the adult worm or parasites and its embryo microfilariae . The studies of microbiology. Its about Introduction, morphology, life cycle, pathogenesis, diagnosis and treatment
Data is collected and this ppt is Created by Sweta Chaudhary. All rights are reserved to her. Contact vivekchaudhary.707@gmail.com for more inquiry. Thank you ...
Direct
Passive
Reverse Passive
Agglutination Inhibition
Coagglutination
Agglutination tests can be done :
On slides
In tubes
In microtritation plates
-Difference between precipitation and agglutination reaction.
A brief presentation for second-year students in Iraqi Technical Institutes (studying Medical Laboratory Technology). This introduction covers the types of blood samples, how to collect these samples, common sites for collection, and anticoagulants in a test-tubes.
2021 laboratory diagnosis of infectious diseases dr.ihsan alsaimarydr.Ihsan alsaimary
2021 laboratory diagnosis of infectious diseases
dr. ihsan alsaimary
university of basrah - college of medicine- DEPARTMENT OF MICROBIOLOGY
POBOX 696 ASHAR
BASRAH 42001
IRAQ
The presentation summarises important methods and protocols of Clinical Microbiology. It may be useful to learners of Clinical microbiology at the undergraduate label. The presentation describes the procedures for collecting clinical samples, transport, and testing. It also describes the different methods of antimicrobial susceptibility testing and standards.
Similar to TB_Specimen_Collection_thru_Processing_TrainerNotes.pdf (20)
NVBDCP.pptx Nation vector borne disease control programSapna Thakur
NVBDCP was launched in 2003-2004 . Vector-Borne Disease: Disease that results from an infection transmitted to humans and other animals by blood-feeding arthropods, such as mosquitoes, ticks, and fleas. Examples of vector-borne diseases include Dengue fever, West Nile Virus, Lyme disease, and malaria.
Title: Sense of Smell
Presenter: Dr. Faiza, Assistant Professor of Physiology
Qualifications:
MBBS (Best Graduate, AIMC Lahore)
FCPS Physiology
ICMT, CHPE, DHPE (STMU)
MPH (GC University, Faisalabad)
MBA (Virtual University of Pakistan)
Learning Objectives:
Describe the primary categories of smells and the concept of odor blindness.
Explain the structure and location of the olfactory membrane and mucosa, including the types and roles of cells involved in olfaction.
Describe the pathway and mechanisms of olfactory signal transmission from the olfactory receptors to the brain.
Illustrate the biochemical cascade triggered by odorant binding to olfactory receptors, including the role of G-proteins and second messengers in generating an action potential.
Identify different types of olfactory disorders such as anosmia, hyposmia, hyperosmia, and dysosmia, including their potential causes.
Key Topics:
Olfactory Genes:
3% of the human genome accounts for olfactory genes.
400 genes for odorant receptors.
Olfactory Membrane:
Located in the superior part of the nasal cavity.
Medially: Folds downward along the superior septum.
Laterally: Folds over the superior turbinate and upper surface of the middle turbinate.
Total surface area: 5-10 square centimeters.
Olfactory Mucosa:
Olfactory Cells: Bipolar nerve cells derived from the CNS (100 million), with 4-25 olfactory cilia per cell.
Sustentacular Cells: Produce mucus and maintain ionic and molecular environment.
Basal Cells: Replace worn-out olfactory cells with an average lifespan of 1-2 months.
Bowman’s Gland: Secretes mucus.
Stimulation of Olfactory Cells:
Odorant dissolves in mucus and attaches to receptors on olfactory cilia.
Involves a cascade effect through G-proteins and second messengers, leading to depolarization and action potential generation in the olfactory nerve.
Quality of a Good Odorant:
Small (3-20 Carbon atoms), volatile, water-soluble, and lipid-soluble.
Facilitated by odorant-binding proteins in mucus.
Membrane Potential and Action Potential:
Resting membrane potential: -55mV.
Action potential frequency in the olfactory nerve increases with odorant strength.
Adaptation Towards the Sense of Smell:
Rapid adaptation within the first second, with further slow adaptation.
Psychological adaptation greater than receptor adaptation, involving feedback inhibition from the central nervous system.
Primary Sensations of Smell:
Camphoraceous, Musky, Floral, Pepperminty, Ethereal, Pungent, Putrid.
Odor Detection Threshold:
Examples: Hydrogen sulfide (0.0005 ppm), Methyl-mercaptan (0.002 ppm).
Some toxic substances are odorless at lethal concentrations.
Characteristics of Smell:
Odor blindness for single substances due to lack of appropriate receptor protein.
Behavioral and emotional influences of smell.
Transmission of Olfactory Signals:
From olfactory cells to glomeruli in the olfactory bulb, involving lateral inhibition.
Primitive, less old, and new olfactory systems with different path
Report Back from SGO 2024: What’s the Latest in Cervical Cancer?bkling
Are you curious about what’s new in cervical cancer research or unsure what the findings mean? Join Dr. Emily Ko, a gynecologic oncologist at Penn Medicine, to learn about the latest updates from the Society of Gynecologic Oncology (SGO) 2024 Annual Meeting on Women’s Cancer. Dr. Ko will discuss what the research presented at the conference means for you and answer your questions about the new developments.
Flu Vaccine Alert in Bangalore Karnatakaaddon Scans
As flu season approaches, health officials in Bangalore, Karnataka, are urging residents to get their flu vaccinations. The seasonal flu, while common, can lead to severe health complications, particularly for vulnerable populations such as young children, the elderly, and those with underlying health conditions.
Dr. Vidisha Kumari, a leading epidemiologist in Bangalore, emphasizes the importance of getting vaccinated. "The flu vaccine is our best defense against the influenza virus. It not only protects individuals but also helps prevent the spread of the virus in our communities," he says.
This year, the flu season is expected to coincide with a potential increase in other respiratory illnesses. The Karnataka Health Department has launched an awareness campaign highlighting the significance of flu vaccinations. They have set up multiple vaccination centers across Bangalore, making it convenient for residents to receive their shots.
To encourage widespread vaccination, the government is also collaborating with local schools, workplaces, and community centers to facilitate vaccination drives. Special attention is being given to ensuring that the vaccine is accessible to all, including marginalized communities who may have limited access to healthcare.
Residents are reminded that the flu vaccine is safe and effective. Common side effects are mild and may include soreness at the injection site, mild fever, or muscle aches. These side effects are generally short-lived and far less severe than the flu itself.
Healthcare providers are also stressing the importance of continuing COVID-19 precautions. Wearing masks, practicing good hand hygiene, and maintaining social distancing are still crucial, especially in crowded places.
Protect yourself and your loved ones by getting vaccinated. Together, we can help keep Bangalore healthy and safe this flu season. For more information on vaccination centers and schedules, residents can visit the Karnataka Health Department’s official website or follow their social media pages.
Stay informed, stay safe, and get your flu shot today!
New Directions in Targeted Therapeutic Approaches for Older Adults With Mantl...i3 Health
i3 Health is pleased to make the speaker slides from this activity available for use as a non-accredited self-study or teaching resource.
This slide deck presented by Dr. Kami Maddocks, Professor-Clinical in the Division of Hematology and
Associate Division Director for Ambulatory Operations
The Ohio State University Comprehensive Cancer Center, will provide insight into new directions in targeted therapeutic approaches for older adults with mantle cell lymphoma.
STATEMENT OF NEED
Mantle cell lymphoma (MCL) is a rare, aggressive B-cell non-Hodgkin lymphoma (NHL) accounting for 5% to 7% of all lymphomas. Its prognosis ranges from indolent disease that does not require treatment for years to very aggressive disease, which is associated with poor survival (Silkenstedt et al, 2021). Typically, MCL is diagnosed at advanced stage and in older patients who cannot tolerate intensive therapy (NCCN, 2022). Although recent advances have slightly increased remission rates, recurrence and relapse remain very common, leading to a median overall survival between 3 and 6 years (LLS, 2021). Though there are several effective options, progress is still needed towards establishing an accepted frontline approach for MCL (Castellino et al, 2022). Treatment selection and management of MCL are complicated by the heterogeneity of prognosis, advanced age and comorbidities of patients, and lack of an established standard approach for treatment, making it vital that clinicians be familiar with the latest research and advances in this area. In this activity chaired by Michael Wang, MD, Professor in the Department of Lymphoma & Myeloma at MD Anderson Cancer Center, expert faculty will discuss prognostic factors informing treatment, the promising results of recent trials in new therapeutic approaches, and the implications of treatment resistance in therapeutic selection for MCL.
Target Audience
Hematology/oncology fellows, attending faculty, and other health care professionals involved in the treatment of patients with mantle cell lymphoma (MCL).
Learning Objectives
1.) Identify clinical and biological prognostic factors that can guide treatment decision making for older adults with MCL
2.) Evaluate emerging data on targeted therapeutic approaches for treatment-naive and relapsed/refractory MCL and their applicability to older adults
3.) Assess mechanisms of resistance to targeted therapies for MCL and their implications for treatment selection
Recomendações da OMS sobre cuidados maternos e neonatais para uma experiência pós-natal positiva.
Em consonância com os ODS – Objetivos do Desenvolvimento Sustentável e a Estratégia Global para a Saúde das Mulheres, Crianças e Adolescentes, e aplicando uma abordagem baseada nos direitos humanos, os esforços de cuidados pós-natais devem expandir-se para além da cobertura e da simples sobrevivência, de modo a incluir cuidados de qualidade.
Estas diretrizes visam melhorar a qualidade dos cuidados pós-natais essenciais e de rotina prestados às mulheres e aos recém-nascidos, com o objetivo final de melhorar a saúde e o bem-estar materno e neonatal.
Uma “experiência pós-natal positiva” é um resultado importante para todas as mulheres que dão à luz e para os seus recém-nascidos, estabelecendo as bases para a melhoria da saúde e do bem-estar a curto e longo prazo. Uma experiência pós-natal positiva é definida como aquela em que as mulheres, pessoas que gestam, os recém-nascidos, os casais, os pais, os cuidadores e as famílias recebem informação consistente, garantia e apoio de profissionais de saúde motivados; e onde um sistema de saúde flexível e com recursos reconheça as necessidades das mulheres e dos bebês e respeite o seu contexto cultural.
Estas diretrizes consolidadas apresentam algumas recomendações novas e já bem fundamentadas sobre cuidados pós-natais de rotina para mulheres e neonatos que recebem cuidados no pós-parto em unidades de saúde ou na comunidade, independentemente dos recursos disponíveis.
É fornecido um conjunto abrangente de recomendações para cuidados durante o período puerperal, com ênfase nos cuidados essenciais que todas as mulheres e recém-nascidos devem receber, e com a devida atenção à qualidade dos cuidados; isto é, a entrega e a experiência do cuidado recebido. Estas diretrizes atualizam e ampliam as recomendações da OMS de 2014 sobre cuidados pós-natais da mãe e do recém-nascido e complementam as atuais diretrizes da OMS sobre a gestão de complicações pós-natais.
O estabelecimento da amamentação e o manejo das principais intercorrências é contemplada.
Recomendamos muito.
Vamos discutir essas recomendações no nosso curso de pós-graduação em Aleitamento no Instituto Ciclos.
Esta publicação só está disponível em inglês até o momento.
Prof. Marcus Renato de Carvalho
www.agostodourado.com
- Video recording of this lecture in English language: https://youtu.be/lK81BzxMqdo
- Video recording of this lecture in Arabic language: https://youtu.be/Ve4P0COk9OI
- Link to download the book free: https://nephrotube.blogspot.com/p/nephrotube-nephrology-books.html
- Link to NephroTube website: www.NephroTube.com
- Link to NephroTube social media accounts: https://nephrotube.blogspot.com/p/join-nephrotube-on-social-media.html
Explore natural remedies for syphilis treatment in Singapore. Discover alternative therapies, herbal remedies, and lifestyle changes that may complement conventional treatments. Learn about holistic approaches to managing syphilis symptoms and supporting overall health.
Tom Selleck Health: A Comprehensive Look at the Iconic Actor’s Wellness Journeygreendigital
Tom Selleck, an enduring figure in Hollywood. has captivated audiences for decades with his rugged charm, iconic moustache. and memorable roles in television and film. From his breakout role as Thomas Magnum in Magnum P.I. to his current portrayal of Frank Reagan in Blue Bloods. Selleck's career has spanned over 50 years. But beyond his professional achievements. fans have often been curious about Tom Selleck Health. especially as he has aged in the public eye.
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Introduction
Many have been interested in Tom Selleck health. not only because of his enduring presence on screen but also because of the challenges. and lifestyle choices he has faced and made over the years. This article delves into the various aspects of Tom Selleck health. exploring his fitness regimen, diet, mental health. and the challenges he has encountered as he ages. We'll look at how he maintains his well-being. the health issues he has faced, and his approach to ageing .
Early Life and Career
Childhood and Athletic Beginnings
Tom Selleck was born on January 29, 1945, in Detroit, Michigan, and grew up in Sherman Oaks, California. From an early age, he was involved in sports, particularly basketball. which played a significant role in his physical development. His athletic pursuits continued into college. where he attended the University of Southern California (USC) on a basketball scholarship. This early involvement in sports laid a strong foundation for his physical health and disciplined lifestyle.
Transition to Acting
Selleck's transition from an athlete to an actor came with its physical demands. His first significant role in "Magnum P.I." required him to perform various stunts and maintain a fit appearance. This role, which he played from 1980 to 1988. necessitated a rigorous fitness routine to meet the show's demands. setting the stage for his long-term commitment to health and wellness.
Fitness Regimen
Workout Routine
Tom Selleck health and fitness regimen has evolved. adapting to his changing roles and age. During his "Magnum, P.I." days. Selleck's workouts were intense and focused on building and maintaining muscle mass. His routine included weightlifting, cardiovascular exercises. and specific training for the stunts he performed on the show.
Selleck adjusted his fitness routine as he aged to suit his body's needs. Today, his workouts focus on maintaining flexibility, strength, and cardiovascular health. He incorporates low-impact exercises such as swimming, walking, and light weightlifting. This balanced approach helps him stay fit without putting undue strain on his joints and muscles.
Importance of Flexibility and Mobility
In recent years, Selleck has emphasized the importance of flexibility and mobility in his fitness regimen. Understanding the natural decline in muscle mass and joint flexibility with age. he includes stretching and yoga in his routine. These practices help prevent injuries, improve posture, and maintain mobilit
3. Specimen Quality is Important
The results of tests, as they affect patient
diagnosis and treatment, are directly
related to the quality of the specimen
collected and delivered to the laboratory.
3
http://www.aphl.org/aphlprograms/infectious/tuberculosis/Pages/tbtool.aspx
4. Working with Healthcare Providers
• Laboratories must develop a good working relationship
with health care providers collecting patient specimens
• Laboratories should have a reference manual for
providers that includes:
– Specimen type and volume requirements
– Specimen collection, labeling, storage and transport
instructions
– Specimen rejection criteria
• Laboratories should provide specific feedback to
individual healthcare providers regarding problems with
the quality of specimens received and provide
recommendations for improvement
4
5. Specimen Types
I. Respiratory
• Sputum
(expectorated,
induced)
• Bronchoalveolar
lavage (BAL)
• Bronchial
wash/brush
• Transtracheal
aspirate
5
II. Non-respiratory
• Tissue
• Body fluids
• Blood
• Stool
• Gastric lavage
• Urine
Refer to the CLSI M48-A document, Laboratory Detection and
Identification of Mycobacteria
7. Sputum
• Recently discharged material from the bronchial tree, with
minimal amounts of oral or nasal material
• Expectorated Sputum: Generated from a DEEP productive cough
• Induced Sputum: produced with hypertonic saline if patient is
unable to produce sputum on their own
• Indications for sputum collection
– To establish an initial diagnosis of TB
– To monitor the infectiousness of the patient
– To determine the effectiveness of treatment
7
8. Sputum Quality
• Specimens are thick and contain
mucoid or mucopurulent material.
• Ideally, 3–5 ml in volume, although
smaller quantities are acceptable if
the quality is satisfactory.
• Poor quality specimens are thin and
watery. Saliva and nasal secretions
are unacceptable.
• Laboratory requisition form should
indicate when a specimen is induced
to avoid the specimen being labeled
as “unacceptable” quality.
Clinical and Laboratory Standards Institute. Laboratory detection and identification of
mycobacteria; approved guideline. CLSI Document M48-A. Wayne, PA: CLSI; 2008.
http://www.stoptb.org/wg/gli/assets/documents/29_specimen_condition_transport.doc 8
10. Indications for Sputum Collection
• Initial diagnosis of TB:
• Collect a series of three sputum specimens, 8-24 hours
apart, at least one of which is an early morning specimen
• Optimally, sputum should be collected before the initiation
of drug therapy
• For release from home isolation:
• If patient is smear positive and on treatment: Collect
sputum until 3 specimens are negative.
• Monitoring of therapy: Obtain sputum specimens for
culture at least monthly until cultures convert to
negative
Centers for Disease Control and Prevention. Guidelines for Preventing the Transmission of Mycobacterium
tuberculosis in Health-Care Settings, MMWR 2005:54, RR-17 10
11. Specimen Collection: All aerosol producing
procedures pose a risk of exposure
11
Whether collecting specimen via
sputum collection or bronchoscopy, if
a patient is suspected or confirmed
of have tuberculosis, airborne
precaution must be used.
12. Specimen Collection
• Suspect or confirmed TB patients should
be in a negative pressure room
• Specimen collection is an aerosol
generating procedure, anyone in the room
during specimen collection must wear a
particulate respirator type N-95 and be
part of the respirator protection plan
• All mycobacteria specimens are collected
into a sealed leak proof container
12
13. Storage and Transport of Sputum
Specimens
• Collection sites should refrigerate samples that
cannot be transported immediately to reduce
growth of contaminating organisms
• Specimens should be delivered to the laboratory
as soon as possible, within 24 hours of collection
is optimal (avoid batching)
• Laboratories may include a cold pack with
specimen transport materials
13
14. Pulmonary Specimens Other Than Sputum:
Collection Guidance
Specimen
Types
Collection Volume
Requirements
Transport
Bronchoalveolar
lavage (BAL)
Bronch brush or
washing
Endotracheal
aspirate
Transtracheal
aspirate
Collect washing
or aspirate in
sputum trap
Place the brush
in a sterile, leak-
proof container
with up to 5 ml
of sterile saline
Minimum volume
is 3 ml
50-ml conical tube or
other sterile container
Transport as soon as
possible at room
temperature
If transport is delayed
more than 1 hour,
refrigerate specimen.
14
• The doubling time for other common respiratory flora is 15 to 20 minutes
• The doubling time for M. tuberculosis is 12 to 24 hours
16. Extrapulmonary Specimens
• The laboratory should expect to receive a variety
of extrapulmonary specimens which may be
divided into two groups
– specimens from non-sterile body sites
– specimens from normally sterile body sites
• Should be collected in a sterile leak-proof
container
• Should be transported as soon as possible
• Swabs are generally not acceptable
16
17. Extrapulmonary Specimen
Collection Guidance
Specimen
from Non-
Sterile Body
Sites
Recommended
Collection Time
Volume
Requirements
Collection
Frequency
Transport Recommended
for Isolation of
MTBC?
Gastric
Aspirate
Early morning
before patient
eats and while
still in bed
5–10 ml is
optimal;
maximum
volume is 15 ml
One specimen
per day on three
consecutive days
Room
temperature; if
delayed >1
hour, neutralize
with 100 mg
sodium
carbonate
Yes
Urine First morning
specimen (void
midstream)
10–15 ml
minimum;
prefer up to 40
ml
One specimen
per day on three
consecutive days
If delayed >1
hour, refrigerate
Yes
Stool No
recommendation
Minimum
volume is 1
gram
No
recommendation
Refrigerate if
delayed >1
hour, do not
freeze
Mainly for
diagnosis of
disseminated
MAC disease in
patients with
AIDS
17
18. Extrapulmonary Specimen
Collection Guidance
Specimen from
Normally Sterile Body
Sites
Volume Requirements Transport Recommended for
Isolation of MTBC?
Cerebral Spinal Fluid 10 ml is optimal;
minimum volume is 2-3
ml
As soon as possible at
room temperature; do not
refrigerate
Usually paucibacillary;
culture may have limited
sensitivity
Other Body Fluids
(pleural, peritoneal,
pericardial, synovial)
10-15 ml is optimal;
minimum volume is 10 ml
If delayed, refrigerate Yes
Tissues or Lymph Nodes As much as possible;
add 2-3 ml sterile saline
As soon as possible at
room temperature (no
formalin, preservatives, or
fixatives)
Yes
Blood 10ml preferred, minimum
5 ml. Collect in SPS or
heparin tube, no EDTA
At room temperature, do
not refrigerate or freeze
Mainly for diagnosis of
disseminated MAC
disease in patients with
AIDS
18
20. Suboptimal and Unacceptable
Specimens
• Processing of suboptimal or poor quality
specimens is a burden on both financial and
personnel resources
• Results generated from processing inappropriate
specimens may not be reliable
• Each laboratory must develop its own specimen
rejection criteria and make these criteria readily
accessible to providers
• Clinicians should be notified when a specimen is
rejected and the reason for rejection should be
provided
• Specimens collected by invasive procedures
should not be rejected
20
21. Possible Rejection Criteria (1)
• Labeling of specimen does not match identifiers
on requisition form
• Insufficient volume
• Dried swabs
– Swabs in general are not optimal
• Provide limited material
• Hydrophobicity of mycobacterial cell envelope
inhibits transfer to media
• Pooled sputum or urine
• Sputum left at room temperature for 24 hours
21
22. Possible Rejection Criteria (2)
• Broken specimen containers or leaking
specimens
• Excessive delay between specimen collection
and receipt in the laboratory
• Blood specimens collected in EDTA might be
rejected for culture as these inhibit growth of
MTB
• Tissue or abscess material in formalin
• Gastric lavage fluid if pH not adjusted within 1
hour of collection
22
23. SPECIMEN TRANSPORT: REFERRAL OF
SPECIMENS WITHIN A LABORATORY
NETWORK
Specimen Collection, Handling, Transport, and Processing
23
24. Transport of Biological Substances
(Category B)
Basic triple packaging system
• (i) a leak-proof primary receptacle(s);
• (ii) a leak-proof secondary packaging containing
sufficient additional absorbent material shall be
used to absorb all fluid in case of breakage
• For cold transportation conditions, ice or dry ice shall be placed
outside the secondary receptacle. Wet ice shall be placed in a leak-
proof container.
• (iii) an outer packaging of adequate strength for
its capacity, mass and intended use.
24
26. Sputum Collection Kit
An example from the Wisconsin
State Laboratory of Hygiene
• Insulated mailer with address label
• UN3373 marking and proper
shipping name “Biological
Substance, Category B”
• Sterile plastic conical tube with
label
• Sealable biohazard specimen
transport
• Cool pack
• Absorbent pad
• Instruction sheet
26
27. Transport of Biological Substances
• Transport of patient specimens is regulated by
both the Department of Transportation (DOT)
and by International Air Transport Association
(IATA) rules.
• Laboratories must have personnel trained in and
familiar with these regulations
• For details regarding these regulations, please
see the information provided in the next slide.
27
30. Instructions for Sputum Collection
• Healthcare providers should educate patients on proper specimen
production and collection
• Patients should also be informed of the possible infectious nature of
his or her secretions
• Specimens should be collected in appropriate tubes that are sterile,
clear, plastic, and leak-proof (50 ml screw capped centrifuge tubes
that can withstand 3000 x g are preferred)
• Proper labeling protocols should be put in place by the laboratories
• Work with TB program to provide instructions for submitters
30
33. Principles of Specimen Processing
Respiratory specimens (and other specimens from non-
sterile sites) require digestion, decontamination, and
concentration:
• Digestion: Mucolytic agent used to liquefy sputum
specimens to release AFB and expose normal flora for
decontamination
• Decontamination: Toxic agent used to kill rapidly growing
normal flora that would otherwise overgrow slow growing
mycobacteria
• Centrifugation: Used to sediment bacteria following
digestion/decontamination
33
34. Effect of Processing Procedure
• Reagents used for digestion and decontamination, to
some extent, are toxic to mycobacteria
• Procedures must be precisely followed
– Time in contact with digestion/decontamination reagents is
critical
– Centrifugation procedures also affect mycobacteria recovery
rates and must be carefully followed
• Culture positivity rates and contamination rates should
be monitored to evaluate performance of processing
methods
34
35. Safety
• Many of the steps within the specimen processing
procedure are aerosol-generating
• The following activities should be performed in a
biological safety cabinet:
Digestion and decontamination
Preparation of concentrated smear
Inoculation of culture media
• Do not disrupt airflow of the cabinet
• Avoid excess clutter inside the BSC
For more information on the biosafety practices in the Mycobacteriology
laboratory, please review the module on biosafety within this series 35
36. Aseptic Techniques: Getting Started
• Disinfect BSC, centrifuge, and tabletop with tuberculocidal
disinfectant (repeat after specimen and culture workup
complete)
• Perform all work on absorbent pad soaked with disinfectant to
absorb any droplets that may inadvertently occur
• When possible, leave an empty space in the rack between
each specimen tube
• Work in sets equivalent to one centrifuge load (e.g., 8
specimens at a time)
36
37. Aseptic Techniques: Processing
• Use a fresh individual, disposable, sterile pipette at every step to
avoid transfer of bacilli
• To avoid droplet aerosol cross-contamination, open and remove
caps from tubes one at a time
• Add diluent to centrifuge tubes from individual tubes without the lip
of the tube touching or creating an aerosol (do not use common
containers or carboys)
• Use aerosol-proof sealed centrifuge cups
• Discard supernatant from decontaminated specimens into splash-
proof container with disinfectant. Autoclave the discard container
daily
37
38. Digestion & Decontamination Methods
Several methods are available for digestion and
decontamination of clinical specimens:
• N-acetyl-L-cysteine-sodium hydroxide (NALC-
NaOH)
• Commercially available: Alpha-Tec NAC-PAC™, BD
MycoPrep™
• Oxalic acid
• Cetylpyridinium chloride (CPC)-sodium chloride
• NaOH method (Petroff’s method)
• Zephiran-trisodium phosphate (Z-TSP)
38
39. NALC-NaOH Method: Principle
• Most common and preferred method
• Rapid and relatively effective in reducing the number of
contaminants
• Addition of the mucolytic agent 2% NALC allows
effective decontamination with 1% NaOH (less harsh on
mycobacteria) (final concentrations)
• Sodium citrate also included in digestion mixture to bind
heavy metal ions in specimen that could inactivate N-
acetyl-L-cysteine 39
40. NALC-NaOH Method: Reagents
CLSI M-48A
Kent and Kubica
• NaOH and sodium citrate can be prepared and
combined in advance
• NALC should be prepared and added fresh daily
• Once NALC added, solution should be used within 24
hours
Volume of
digestant
needed
4% NaOH 2.9% sodium
citrate
dehydrate
Add NALC
(fresh)
50 ml 25 ml 25 ml 0.25 g
100 ml 50 ml 50 ml 0.50 g
500 ml 250 ml 250 ml 2.50 g
40
41. NALC-NaOH Method: Procedure for Sputum
1. Add equal volume of NALC-NaOH solution to 5-10 ml of sputum in
50 ml plastic screw cap centrifuge tube
2. Cap tube tightly. Invert the tube so that the NALC-NaOH solution
contacts all inside surfaces of the tube and cap and then mix the
contents for approximately 5-20 seconds with a Vortex mixer.
3. Allow mixture to stand for 15 minutes at room temperature with
occasional gentle shaking by hand.
4. Add sterile distilled water or sterile pH 6.8 phosphate buffer to the
50 ml mark on tube. Securely cap tube and mix by inversion
5. Centrifuge the tubes for 15 min at 3,000 x g using aerosol-proof
sealed centrifuge cups
41
42. NALC-NaOH Method: Procedure for Sputum
• After centrifugation, open centrifuge cups in BSC, slowly poor off
supernatant into splash-proof discard container containing
disinfectant
– Take care to not disturb or pour off sediment (pellet)
– Take care to avoid aerosol production and to prevent contamination of
the lip of the tube
• Wipe the lip of the tube with gauze soaked with disinfectant
• Resuspend sediment in 1-2 ml of saline solution or phosphate buffer
• Mix gently and proceed to culture inoculation and smear preparation
42
43. NaOH Concentration is Key
Amount of
NaOH in 100 ml
water
% NaOH % NaOH when
added to equal
volume Na
citrate
Final
concentration of
NaOH when
added to
specimen
4.0g 4.0% 2.0% 1.0%
6.0g 6.0% 3.0% 1.5%
8.0g 8.0% 4.0% 2.0%
CLSI M-48A
• Recommended final concentration is 1.0% NaOH
• Concentration of NaOH can be adjusted based on contamination
rate in individual laboratories
• NaOH at a FINAL concentration of ≥2.0% can be lethal to
mycobacteria (may see decrease culture sensitivity in smear
negative specimens)
43
44. Timing is CRITICAL
• 15 MINUTES
– Time in contact with NALC-NaOH is critical since the high
pH rapidly kills microorganisms in the specimen including
mycobacteria
• Over processing results in reduced recovery of
mycobacteria
• The importance of timing must be considered when
deciding how many specimens can be processed in
one run
44
45. Specimen Processing QC
• A Negative Processing Control (10 ml sterile
water or buffer) should be included with each
batch of specimens processed
• Negative control is put through entire specimen
processing procedure and inoculated to media
• Determines if contamination is introduced during
processing or culture handling
• Assures that isolates are coming from patients and
not from any other source
45
46. 46
Definition of Cross Contamination
Cross contamination: the transfer of M.
tuberculosis complex bacilli (or other
mycobacteria) from one specimen to
another specimen that does not contain
viable bacilli, causing a false positive result.
– The phenomenon of misdiagnosis of tuberculosis due
to cross contamination has been widely reported and
has significant clinical and therapeutic impact on the
patient.
47. 47
To reduce the possibility of Cross
Contamination:
• Use daily aliquots of processing reagents and buffers.
Any leftover should be discarded.
• Never use common beakers or flasks when processing.
• Keep the specimen tubes tightly closed and clean the
outside of the tube prior to vortexing or shaking.
• Pour decontamination reagents or buffers slowly on the
side of the tube without causing any splashing. Do not
touch the container of reagents to the lip of the tube at
any time during addition.
48. 48
To reduce the possibility of Cross
Contamination:
• Open the specimen tubes very gently to avoid aerosol
generation.
• When adding reagents to the tube, open one tube at a
time. Do not keep all the tubes open at the same time.
• Do not place tubes too close to each other in the rack
• Change gloves often
• Avoid manipulation of PT specimens
• Disinfect biological safety cabinet work surfaces
routinely.
49. 49
Specimen Processing Proficiency
• Digestion, decontamination, and conentration
procedures should only be performed byt rrained
laboratory staff.
• Mycobacteriology laboratories should participate in an
approved proficiency testing program.
• Proficiency in culture and identification of MTV may be
maintained by digestion and culture of 15-20 specimens
per week.
50. SPECIMENS FROM CYSTIC FIBROSIS
PATIENTS AND EXTRAPULMONARY SITES
Specimen Collection, Handling, Transport and Processing
50
51. Cystic Fibrosis (CF) Patients
• Specimens from CF patients are often heavily
contaminated with Pseudomonas aeruginosa.
• If it is known or discovered specimen is from a
patient with CF or notable media contamination
you can process concentrated sediment using
only the 5% oxalic acid method.
51
52. Oxalic Acid Processing Method for Specimens
from CF Patients
• Add an equal amount of 5% oxalic acid to:
- 5-10 ml of primary respiratory specimen or
- NALC-NaOH processed concentrated sediment
• Vortex specimen and allow to incubate at room temperature for 30
minutes, mixing every 10 minutes
• Neutralize with buffer solution
• Concentrate specimen by centrifugation for 15 minutes at ≥ 3000 x g
• Decant supernatant into splash-proof container and resuspend pellet
with buffer solution
• Inoculate media
52
53. Processing Gastric Lavage and Urine
• Centrifuge for 30 minutes at ≥ 3000 x g
• Discard supernatant carefully into splash-proof
container
• Re-suspend pellet in sterile distilled water
• Process suspension as for sputum (NALC-
NaOH)
53
54. Processing Aseptically Collected Fluids
• Cerebral spinal fluid (CSF), synovial,
pleural, peritoneal, pericardial
• No decontamination required
• Concentrate specimen to maximize the
yield of mycobacteria
• Inoculate directly to culture media
54
55. Processing Tissue Specimens
• Lymph node, lung tissue, biopsies
• Tissue submitted in formalin is unsatisfactory for culture
• No decontamination required
• Process tissue specimens using a sterile tissue grinder,
or mortar and pestle
• Inoculate directly to culture media
55
56. Processing Blood or Bone Marrow Aspirates
• Specimens inoculated directly into MYCO/F LYTIC
bottles or BacT/ALERT MB blood medium
• Direct inoculation of blood onto a solid medium is not
recommended
• If transport is necessary, sodium polyanethol sulfate,
heparin, or citrate may be used as anticoagulants
• Blood collected in EDTA and coagulated blood are not
acceptable
56
58. Concentration of Specimens
• Since mycobacteria do not readily sediment, centrifugation force and
time are important for maximal concentration
• Specimens should be centrifuged for at least 15 minutes at 3000 x g
• Revolutions per minute (rpm) is a measure of speed for a particular
centrifuge head and not a measure of concentration efficiency or
relative centrifugal force (RCF)
• The relative centrifugal force is measured in units and is expressed
in multiples of the earth’s gravitational field abbreviated as g
• Use of a refrigerated centrifuge at 8 to 10°C may help to eliminate
heat build-up which could be lethal to mycobacteria
58
59. Calculation of Centrifugal Force
Formula for calculating a particular centrifugal force
is:
RCF = 1.12r (RPM/1000) 2
where r is the radius, which is the distance in
mm from the center of rotation to a point
within the rotor, and RPM (revolutions per
minute), which is the speed of rotation
• This information should be published in many of
the centrifuge manufacturers instruction manuals
59
Note: Nomogram attached in Resources section
61. Quality Indicators: Contamination Rate
• “Contamination” occurs when inoculated media is completely
compromised due to overgrowth with non-acid fast
organisms.
• Contamination Rate monitors specimen preparation and the
decontamination process
• Calculation of contamination rate in Liquid media:
– Numerator: number of inoculated broth cultures discarded or re-
decontaminated in 1 month due to contamination
– Denominator: total number of broth cultures inoculated in one month
• Calculation of contamination rate in Solid media:
– Numerator: number of inoculated solid media slants or plates discarded in 1
month due to contamination
– Denominator: total number of solid media slants or plates inoculated in one
month
61
62. Contamination Rates
• Acceptable overall rates of contamination
– Solid media (LJ) is 2-5%
– Liquid media (MGIT960) is 7-8%
– Contamination rates for the individual laboratory can be affected
by the type of media used (i.e. media containing antibiotics)
• A contamination rate less than that of the acceptable
rate indicates that processing methods are too harsh
– NaOH concentration too high
– Specimen exposure time to NALC-NaOH too long
• A contamination rate greater than that of the acceptable
rate could indicate a pre-analytical problem, an
inadequate decontamination process, or both
APHL, 2009, Assessing your Laboratory
62
63. Potential Causes of High Contamination Rates
CLSI M-48A
• Lack of appropriate sputum collection guidance for patients
• Delays in transport
• Lack of refrigeration prior to transport
• Inappropriate storage conditions or processing delays upon
receipt in the laboratory
• Decontamination process is ineffective
– NaOH concentration too low
– Specimen exposure time to NALC-NaOH too short
63
64. Quality Indicators: Positivity (Recovery) Rate
• Establishes a baseline for a given population or
geographic area
• Assists in identifying potential false positive or false
negative cultures (MTB)
• Assists in identifying environmental contamination
• Calculation of positivity rate:
– Numerator: number of cultures reported as MTB in one
month
– Denominator: total number of cultures reported (TB, NTM,
negative, contaminated) in one month.
64
65. Quality Indicators: Positivity (Recovery) Rate
• Expectation: Population/geographic region dependent
• Increases may be due to:
– Shift in patient population
– Cross contamination/false positives
– Contaminated reagents, media, water (NTM)
– Specimens contaminated during collection
• Decreases may be due to:
– Shift in patient population
– Problems with specimen quality
– Problems with specimen processing
– Problems with equipment or media
– Increase in contamination
65
66. What should I do if Quality Indicators or
Controls are out of range?
• Ensure quality specimens are being received in the laboratory
• Ensure quality reagents and media are being used
• Ensure water used for specimen processing is sterile and
filtered
• Ensure laboratory equipment (e.g. incubators, BSCs) is
functioning properly
• Ensure protocols are followed
• Ensure staff are trained and proficient
66
67. References
• Kent and Kubica, Public Health Mycobacteriology, A Guide for
the Level III Laboratory, US Public Health Service. 1985
• ASM Press, Manual of Clinical Microbiology, 10th edition.
Volume 1. James Versalovic, editor. 2011
• CLSI. Laboratory Detection & Identification of Mycobacteria;
Approved Guidelines. CLSI document M48-A. Wayne, PA:
Clinical & Laboratory Standards Institute; 2008.
• APHL/CDC. Mycobacterium tuberculosis: Assessing Your
Laboratory. 2009
67
68. References
• Centers for Disease Control and Prevention. Guidelines for Preventing the
Transmission of Mycobacterium tuberculosis in Health-Care Settings, 2005.
MMWR 2005;54(No. RR-17).
• Public Health Mycobacteriology. A Guide for the Level III Laboratory. U.S.
Department of Health and Human Services Public Health Service. Centers
for Disease Control, Atlanta, Georgia. 1985.
• D. Rickwood, T. Ford, and J. Steensgaard. Centrifugation, Essential Data.
John Wiley & Sons. Published in association with BIOS Scientific
Publishers Limited, 1994.
• Rickman TW, Moyer NP. Increased Sensitivity of Acid-Fast Smears.
Journal of Clinical Microbiology. 1980; 11:618-20.
• A Centrifuge Primer. Published by Spinco Division of Beckman Instruments,
Inc., Palo Alto, California. Copyright 1980, Beckman Instruments, Inc.
68