SlideShare a Scribd company logo
R Markdown,
Rpubs & github publishing and
Shiny by example
Vincent Claes
New R Markdown document
Vincent Claes
Title and Author – HTML Document
Vincent Claes
Knit to HTML
Vincent Claes
Save document first!
Knit to HTML
Vincent Claes
Rmd code analytics
Vincent Claes
• http://www.rstudio.com/wp-content/uploads/2015/03/rmarkdown-
reference.pdf
• http://www.rstudio.com/wp-content/uploads/2016/03/rmarkdown-
cheatsheet-2.0.pdf
Rmd Syntax
Vincent Claes
# Header 1
## Header 2
### Header 3
#### Header 4
##### Header 5
###### Header 6
Rmd Headers
Vincent Claes
plain text plain text
*italics* italics
**bold** bold
Rmd text syntax
Vincent Claes
Rmd text syntax
Vincent Claes
To put text on next line in html: 2 spaces after text in Rmd file
R code chunks
Vincent Claes
R code chunk options
Vincent Claes
R code chunk options
Vincent Claes
R code chunk options
Vincent Claes
Online publishing
Vincent Claes
• Rpubs
• http://rpubs.com/
• Create an account, it’s free.
• Github
• Read about git: https://git-scm.com/book/en/v2/Getting-Started-Git-Basics
• https://github.com/
• Create a free account
• Git installed => download from https://git-scm.com/download/win
• Restart Rstudio after git installation
Online publishing to Rpubs
Vincent Claes
Online publishing to Rpubs
Vincent Claes
Online publishing to Rpubs
Vincent Claes
Online publishing to Rpubs
Vincent Claes
Online publishing to Rpubs
Vincent Claes
Online publishing to Rpubs
Vincent Claes
• http://rpubs.com/cteq/Example01
Online publishing to Rpubs
Vincent Claes
• http://rpubs.com/cteq/Example02
• Other html widgets:
• http://www.htmlwidgets.org/
Online publishing to github
Vincent Claes
• Create new repo on github
Online publishing to github
Vincent Claes
• Create new repo on github
Online publishing to github
Vincent Claes
• New project => Version Control => git
Online publishing to github
Vincent Claes
• New project
Online publishing to github
Vincent Claes
• Copy/Paste Example02.Rmd to this project directory
Online publishing to github
Vincent Claes
• Changes files to [A] (means Added) and hit push
Online publishing to github
Vincent Claes
• Changes files to [A] (means Added) and hit push
Online publishing to github
Vincent Claes
• Changes files to [A] (means Added) and hit push
Online publishing to github
Vincent Claes
• Commit changes
Online publishing to github
Vincent Claes
• Commit changes
Online publishing to github
Vincent Claes
• Commit changes
Online publishing to github
Vincent Claes
• Commit changes
Online publishing to github
Vincent Claes
• In Rstudio make a new directory “gh-pages”
• Move your files into this directory
Online publishing to github
Vincent Claes
• In Rstudio make a new branch “gh-pages”
• Push /commit the files to this new branch and check them on
github.com website
• Knit to html your Example02.Rmd file
Online publishing to github
Vincent Claes
• Knit Rmd to html and push / commit
Online publishing to github
Vincent Claes
• When your url is: https://github.com/pxltech/SmartSystems/tree/gh-
pages/gh-pages change it to
https://pxltech.github.io/SmartSystems/gh-pages/Example02.html
Online publishing to github
Vincent Claes
• Generating slides
• Generating pdf files
• Generating WORD documents
Rmarkdown: some other features
Vincent Claes
• File => new project => New Directory => Shiny Web Application
Shiny Applications in R
Vincent Claes
• Create git repository
Shiny Applications in R
Vincent Claes
Shiny Applications in R
Vincent Claes
Shiny Applications in R
Vincent Claes
Shiny Applications in R [app.R]
Vincent Claes
Shiny Applications in R Publish application
Vincent Claes
• http://www.shinyapps.io create a free account
• Publish your application to shinyapps.io website
Shiny Applications in R Publish application
Vincent Claes
Shiny Applications in R Publish application
Vincent Claes
• Other Example:
Shiny Applications in R Publish application
Vincent Claes
Shiny Applications in R Publish application
Vincent Claes
• Happy Coding!
• vincent.claes[at]pxl.be

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