1. The authors aimed to determine if the Arabidopsis thaliana p80 protein localizes to endosomal vesicles like its animal homolog by expressing a GFP fusion of the plant protein in HeLa cells.
2. Control fusion proteins expressed well but the plant p80 protein did not reach sufficient levels for localization analysis, only showing background fluorescence.
3. Low transfection efficiency of the plant protein into human cells was a challenge, suggesting a plant-based system would be better for future studies of p80 protein localization.
P elements are transposable elements that were discovered in Drosophila as the causative agents of genetic traits called hybrid dysgenesis. The transposon is responsible for the P trait of the P element and it is found only in wild flies. They are also found in many other eukaryotes.
P elements are transposable elements that were discovered in Drosophila as the causative agents of genetic traits called hybrid dysgenesis. The transposon is responsible for the P trait of the P element and it is found only in wild flies. They are also found in many other eukaryotes.
A transposable element (TE or transposon) is a DNA sequence that can change its position within a genome, sometimes creating or reversing mutations and altering the cell's genome size.
Transposition often results in duplication of the TE.
Barbara McClintock's discovery of these jumping genes earned her a Nobel Prize in 1983.
Transposable elements make up a large fraction of the genome and are responsible for much of the C-value of eukaryotic cells.
Origin of Junk DNA Hypothesis
Types of Junk DNA
Mobile DNA Element: Overview
Rate of Transposition, Induction and Defence
Classification of Transposons
Transposable Elements in Bacteria
Mobile Genetic Elements in Eukaryotes
Drosophila Transposons
Human Retrotranspons
Transposons as Mutagens
Genetic Transformation using Transposons
Transposons and Genome Organization
Transposable Elements and Evolution
Transposons and Diseases
Gene structure and its characteristics: structure of DNA, structure by watson and crick double helix structure, dominant and recessive gene, homologous and heterozygous state, translation, transcription, characteristics of gene.
This presentation provides an overview of What is a transposon,different types of transposons, their mechanism of action, examples for each type of transposons, changes caused due to insertion of transposon into the target gene and applications of Transposons. They are controlling factors in gene expression. Jumping genes is a special area of interest in Genetic research.
heterosis is a mystery pheneomenon. although there are so many theories explaing the genetic mechanism behind heterosis, none of them will explain the phenomenon totally. exploring epigenetic mechanism behind heterosis can help in the better understanding.
A transposable element (TE or transposon) is a DNA sequence that can change its position within a genome, sometimes creating or reversing mutations and altering the cell's genome size.
Transposition often results in duplication of the TE.
Barbara McClintock's discovery of these jumping genes earned her a Nobel Prize in 1983.
Transposable elements make up a large fraction of the genome and are responsible for much of the C-value of eukaryotic cells.
Origin of Junk DNA Hypothesis
Types of Junk DNA
Mobile DNA Element: Overview
Rate of Transposition, Induction and Defence
Classification of Transposons
Transposable Elements in Bacteria
Mobile Genetic Elements in Eukaryotes
Drosophila Transposons
Human Retrotranspons
Transposons as Mutagens
Genetic Transformation using Transposons
Transposons and Genome Organization
Transposable Elements and Evolution
Transposons and Diseases
Gene structure and its characteristics: structure of DNA, structure by watson and crick double helix structure, dominant and recessive gene, homologous and heterozygous state, translation, transcription, characteristics of gene.
This presentation provides an overview of What is a transposon,different types of transposons, their mechanism of action, examples for each type of transposons, changes caused due to insertion of transposon into the target gene and applications of Transposons. They are controlling factors in gene expression. Jumping genes is a special area of interest in Genetic research.
heterosis is a mystery pheneomenon. although there are so many theories explaing the genetic mechanism behind heterosis, none of them will explain the phenomenon totally. exploring epigenetic mechanism behind heterosis can help in the better understanding.
Making organelles visible - in planta and in societasAnne Osterrieder
This is the presentation I gave in Salzburg at the Annual Meeting of the Society for Experimental Biology, July 2012, for receiving the President's Medal for Education and Public Affairs.
http://www.sebiology.org/meetings/Salzburg2012/pres_meds.html
The final presentation for BTC1700H for team Wild Type. The presentation includes financial and clinical data regarding expression and purification of GFP from an unknown sample of DNA.
1 At least 2 questions from this section will be on the .docxmercysuttle
1
At least 2 questions from this section will be on the final exam
SAMPLE QUESTIONS FOR THE FINAL EXAM
Question 1. Ferritin is a protein involved in the storage of iron inside cells. To prevent toxic accumulation of
too much iron inside cells, the intracellular level of ferritin is tightly regulated. To study the regulation of
ferritin synthesis, mammalian cells are grown with or without iron in the culture medium. Note that iron in the
culture medium is rapidly transported inside cells.
a) Upon addition of iron to the culture medium, the intracellular concentration of ferritin mRNA is unchanged
but the concentration of ferritin protein increases. How do you think ferritin expression is regulated? Briefly
explain.
The regulatory sequence given below is found in the ferritin mRNA between the cap structure and the start
codon.
5’-GGGUUUCCGUUCAACAGUGCUUGGACGGAAACCC-3’
Mutations within in this sequence are used to study the regulation of ferritin expression. The following
observation are made:
• ferritin expression is high, independent of the iron concentration, when (i) the entire region is deleted, or
(ii) the region located upstream of the underlined sequence is deleted or (iii) the underlined sequence is
replaced with a random sequence.
• ferritin expression remains iron-dependent when this region is replaced by the following sequence:
5’-GGGCUCAGGUUCAACAGUGCUUGGACCUGAGCCC-3’.
Note that the sequence differences are indicated in bold.
b) Explain why these observations suggest that both sequence and structure of the 5’ end of ferritin mRNA are
important for the regulation of ferritin expression.
c) Ferritin translation becomes iron-independent when the regulatory sequence is moved from the 5’ side
(upstream of the open reading frame) to the 3’ side (downstream of the open reading frame) of ferritin mRNA.
Which step of ferritin translation do you think is affected by the intracellular level of iron?
d) IRP is a protein involved in the regulation of ferritin expression. Anti-IRP antibodies attached to sepharose
beads are added to a cell extract, then the extract is centrifuged to separate the pellet fraction (containing the
sepharose beads ) from the supernatant fraction.
If the cells are cultured in the absence of iron, ferritin mRNA is found together with IRP in the pellet. In
contrast when cells are cultured in the presence of iron ferritin mRNA remains in the supernatant fraction while
IRP alone is found in the pellet. Briefly explain the likely role of IRP in the regulation of ferritin expression.
Question 2. You are studying the development of a newly discovered insect. Like drosophila, it undergoes a
stage in early larval development where the eve gene is expressed in a pattern of 7 stripes. You are particularly
interested in stripes 2 and 5. The following figures show the organization of the cis-acting elements that control
the expression o ...
ShRNA-specific regulation of FMNL2 expression in P19 cellsYousefLayyous
This video encompasses all the steps and data produced for my graduation project in BSc in Biopharmaceutical science. During the course of the project we modified mammalian cells using Short Hairpin RNA to inhibit the correct function of the cytoskelleton. In this way we studied the importance of FMNL2 for the activation and regulation of actin fibers. Among the methods used are Flourescent microscopy, mamallian cell culture, cloning and flow cytometry.
Rho Kinase Promotes Alloimmune Responses by Regulating the Proliferation and ...
Microsoft PowerPoint - SUSRC 4.27 (Website)
1. Expression and localization of Arabidopsis thaliana p80 protein in a human cancer cell line
Joseph S. Danner and F. Les Erickson, Ph.D.
Department of Biological Sciences, Salisbury University, Salisbury, Maryland
Abstract
We have identified a gene in the model organism Arabidopsis thaliana whose gene product is believed to play a role in endosomal
recycling. This gene, termed p80, is thought to have an ortholog present in animal cells where it has been implicated in
downregulation of T-cell receptor signaling (3), a process linked to the trafficking of endosomal vesicles. Strong sequence
similarities, protein interactions, and structural motifs provide a strong basis for the idea that these homologous genes encode
proteins of comparable function (Erickson, unpublished results). To substantiate the hypothesis that p80 functions in endosomal
trafficking, fluorescence microscopy is used to identify the localization of the p80 protein in immortalized HeLa cells. An
expression plasmid is used to introduce p80 into HeLa cells through transient transfection methods. Expression of the plasmid then
yields a fusion protein in which p80 is conjugated to GFP; localization can then be detected by using techniques in fluorescence.
Conclusions
•Control gene constructs -GABARAP, GFP, Actin, and Myosin III- all show robust expression in HeLa cells.
•Plant p80 does not express to levels sufficient for determining if it localizes to endosomal vesicles.
•Low expression levels resulted in only background levels of fluorescence in p80 transformed cells. This was misleading at first because it looked as
if p80 protein localized to vesicles (see fig 2.P-R ). Untransformed control cells (see fig 2.L-N), however, show the same fluorescent patterns,
indicating that p80 is not being expressed to sufficient levels in this heterologous system.
•Low transfection levels raise concern that the protocol used may be inefficient. Between 30 and 50 percent of all cells subjected to transfection
showed expression; these levels varied in intensity.
•A plant based transfection system should prove more valuable in future studies.
References
1. Erickson, F.L., Corsa, A.C., Dosé, A.C., Burnside, B. 2003. Localization of a Class III Myosin to Filopodia Tips in Transfected HeLa Cells Requires
an Actin-binding Site in its Tail Domain. Molecular Biology of the Cell 14:4173-4180.
2. Green, F., O’Hare, T., Blackwell, A., Enns, C.A. 2002. Association of human transferrin receptor with GABARAP. FEBS Letters 518(1-3):101-06
3. Park, J., B.S. Lee, J.K Choi, R.E. Means, J. Choe, and J.U. Jung. 2002. Herpesviral Protein Targets a Cellular WD Repeat Endosomal Protein to
Downregulate T Lymphocyte Receptor Expression. Immunity 17: 221-233.
Acknowledgements
We would like to thank the Henson School of Science & Technology at Salisbury
University and Glenda Gillaspy, Ph.D. at Virginia Tech in Blacksburg, VA for her helpful
comments throughout these procedures. Additionally, we would like to thank the USDA
for funding support.
Figure 1. Introducing Expression Vectors into
HeLa Cells. Cultured HeLa cells are plated in 6-well
culture dishes and transiently transfected with fusion
plasmids that express GFP. HeLa Monster and TransIT
reagent are used to increase the efficiency of DNA
uptake. After 48 hours, cells are then fixed with a 4%
paraformaldehyde solution, and stained with
fluorescent DAPI and Texas-Red phalloidin dyes.
The Procedure
Figure 2. Transient Transfection in HeLa Cells. (Above) DNA is stained with DAPI (A), a fluorescent molecule excited by UV light waves. Texas-Red phalloidin is introduced into the cell (B) and stains Actin microfilaments, while an
expression plasmid with a fluorescent gene product (GFP) is used to determine subcellular localization of the protein (C). Images are merged on top of one another (D) to illustrate relative locations of these fluorescent structures. Cells transfected
with the GFP expression plasmid show expression of the gene product throughout the cell (E and F); GFP localizes to the nucleus and cytoplasm. Previous localization studies have shown that GABARAP localizes to perinuclear vesicles (2) in the
cytoplasm which are few in number (G and H). GFP:Actin constructs were introduced to show colocalization patterns between the encoded fusion protein and the Actin microfilaments stained by Texas-Red (I and J). Fusion protein shows that
Myosin III extends to the filopodia tips (1) where it accumulates in bundles (K). Control cells, not transfected with GFP plasmid, show varying background levels of green fluorescence (L-N). GFP:p80 constructs (O-R) show trends similar to those
seen in control cells, indicating that perceived levels of expression may be background fluorescence.
AA
DNADNA
BB
ActinActin
CC
GFPGFP
DD
MergeMerge
DNA, Actin, Control
N
DNA, Actin, Control
M
DNA, Actin, Control
L
H
DNA, Actin, GFP:GABARAP
G
DNA, Actin, GFP:GABARAP
I
DNA, Actin, GFP:Actin
J
DNA, Actin, GFP:Actin
K
DNA, Actin, GFP:Myosin III
R
DNA, Actin, GFP:p80
Q
DNA, Actin, GFP:p80
P
DNA, Actin, GFP:p80
O
DNA, Actin, GFP:p80
F
DNA, Actin, GFP
E
DNA, Actin, GFP
Animal p80 Localizes to Endosomes
In animals, p80 functions in vesicle
trafficking and is involved in the
dowregulation of T-cell receptor
response (3). The functional pathway
recycles endosomal vesicles into and
out of the cell.
The predicted Arabidopsis gene At3g05090 may be the
plant p80 gene based on amino acid similarities; does plant
p80 protein also localize to endosomal vesicles?
The “80” Million Dollar Question
The Approach
Subcellular localization of the p80 protein can be
studied through fluorescence microscopy. Cultured
cells are transfected with GFP fusion genes and the
resulting fluorescent proteins are then analyzed
using microscopy.