The document provides an overview of the MeV (Multiple Experiment Viewer) application for analyzing multiple microarray experiments. It describes how MeV treats and visualizes gene expression data through expression matrices and vectors. It also discusses essential concepts for analyzing gene expression data like distance metrics and clustering algorithms. The document demonstrates MeV's capabilities such as file loading, ANOVA, SAM, and CGH analysis through examples.
Nighthawk: A Two-Level Genetic-Random Unit Test Data GeneratorCS, NcState
A talk to ASE 2007 by Jamie Andrews, Felix C. H. Li Department of Computer Science University of Western Ontario; and Tim Menzies Lane Department of Computer Science West Virginia University
Advanced strategies for Metabolomics Data AnalysisDmitry Grapov
Part of a lectures series for the international summer course in metabolomics 2013 (http://metabolomics.ucdavis.edu/courses-and-seminars/courses). Get more material and information here (http://imdevsoftware.wordpress.com/2013/09/08/sessions-in-metabolomics-2013/).
Automation of (Biological) Data Analysis and Report GenerationDmitry Grapov
I've been experimenting with automating simple and complex data analysis and report generation tasks for biological data and mostly using R and LATEX. You can see some of my progress and challenges encountered.
Metabolomic Data Analysis Workshop and Tutorials (2014)Dmitry Grapov
Get more information:
http://imdevsoftware.wordpress.com/2014/10/11/2014-metabolomic-data-analysis-and-visualization-workshop-and-tutorials/
Recently I had the pleasure of teaching statistical and multivariate data analysis and visualization at the annual Summer Sessions in Metabolomics 2014, organized by the NIH West Coast Metabolomics Center.
Similar to last year, I’ve posted all the content (lectures, labs and software) for any one to follow along with at their own pace. I also plan to release videos for all the lectures and labs.
Nighthawk: A Two-Level Genetic-Random Unit Test Data GeneratorCS, NcState
A talk to ASE 2007 by Jamie Andrews, Felix C. H. Li Department of Computer Science University of Western Ontario; and Tim Menzies Lane Department of Computer Science West Virginia University
Advanced strategies for Metabolomics Data AnalysisDmitry Grapov
Part of a lectures series for the international summer course in metabolomics 2013 (http://metabolomics.ucdavis.edu/courses-and-seminars/courses). Get more material and information here (http://imdevsoftware.wordpress.com/2013/09/08/sessions-in-metabolomics-2013/).
Automation of (Biological) Data Analysis and Report GenerationDmitry Grapov
I've been experimenting with automating simple and complex data analysis and report generation tasks for biological data and mostly using R and LATEX. You can see some of my progress and challenges encountered.
Metabolomic Data Analysis Workshop and Tutorials (2014)Dmitry Grapov
Get more information:
http://imdevsoftware.wordpress.com/2014/10/11/2014-metabolomic-data-analysis-and-visualization-workshop-and-tutorials/
Recently I had the pleasure of teaching statistical and multivariate data analysis and visualization at the annual Summer Sessions in Metabolomics 2014, organized by the NIH West Coast Metabolomics Center.
Similar to last year, I’ve posted all the content (lectures, labs and software) for any one to follow along with at their own pace. I also plan to release videos for all the lectures and labs.
Strategies for Metabolomics Data AnalysisDmitry Grapov
Part of a lectures series for the international summer course in metabolomics 2013 (http://metabolomics.ucdavis.edu/courses-and-seminars/courses). Get more material and information here (http://imdevsoftware.wordpress.com/2013/09/08/sessions-in-metabolomics-2013/).
Prote-OMIC Data Analysis and VisualizationDmitry Grapov
Introductory lecture to multivariate analysis of proteomic data.
Material from the UC Davis 2014 Proteomics Workshop.
See more at: http://sourceforge.net/projects/teachingdemos/files/2014%20UC%20Davis%20Proteomics%20Workshop/
Data Normalization Approaches for Large-scale Biological StudiesDmitry Grapov
Overview of how to estimate data quality and validate normalization approaches to remove analytical variance.
See here for animations used in the presentation:
http://imdevsoftware.wordpress.com/2014/06/04/using-repeated-measures-to-remove-artifacts-from-longitudinal-data/
This video presents the next step of automated pipe of Machine Learning implemented by Edge-ML. The aim is to build multi-varied classifier without parameters to optimise, starting from mono-varied pre-treatments (discretisation and grouping). More precisely, this talk presents 4 ways of improvement of the Naive Bayes classifier, in order to make this classifier more accurate while keeping its robustness.
Integrative analysis of transcriptomics and proteomics data with ArrayMining ...Natalio Krasnogor
These slides are part of a presentation I gave on March 2010 at the BioInformatics and Genome Research Open Club at the Weizmann Institute of Science, Israel.
In these slides my student and I describe two web-applications for microarray and gene/protein set analysis,
ArrayMining.net and TopoGSA. These use ensemble and consensus methods as well as the
possibility of modular combinations of different analysis techniques for an integrative view of
(microarray-based) gene sets, interlinking transcriptomics with proteomics data sources. This integrative process uses tools from different fields, e.g. statistics, optimisation and network
topological studies. As an example for these integrative techniques, we use a microarray
consensus-clustering approach based on Simulated Annealing, which is part of the ArrayMining.net
Class Discovery Analysis module, and show how this approach can be combined in a modular
fashion with a prior gene set analysis. The results reveal that improved cluster validity indices can be obtained by merging the two methods, and provide pointers to distinct sub-classes within pre-defined tumour categories for a breast cancer dataset by the Nottingham Queens Medical Centre.
In the second part of the talk, I show how results from a supervised
microarray feature selection analysis on ArrayMining.net can be investigated in further detail with
TopoGSA, a new web-tool for network topological analysis of gene/protein sets mapped on a
comprehensive human protein-protein interaction network. I discuss results from a TopoGSA
analysis of the complete set of genes currently known to be mutated in cancer.
Strategies for Metabolomics Data AnalysisDmitry Grapov
Part of a lectures series for the international summer course in metabolomics 2013 (http://metabolomics.ucdavis.edu/courses-and-seminars/courses). Get more material and information here (http://imdevsoftware.wordpress.com/2013/09/08/sessions-in-metabolomics-2013/).
Prote-OMIC Data Analysis and VisualizationDmitry Grapov
Introductory lecture to multivariate analysis of proteomic data.
Material from the UC Davis 2014 Proteomics Workshop.
See more at: http://sourceforge.net/projects/teachingdemos/files/2014%20UC%20Davis%20Proteomics%20Workshop/
Data Normalization Approaches for Large-scale Biological StudiesDmitry Grapov
Overview of how to estimate data quality and validate normalization approaches to remove analytical variance.
See here for animations used in the presentation:
http://imdevsoftware.wordpress.com/2014/06/04/using-repeated-measures-to-remove-artifacts-from-longitudinal-data/
This video presents the next step of automated pipe of Machine Learning implemented by Edge-ML. The aim is to build multi-varied classifier without parameters to optimise, starting from mono-varied pre-treatments (discretisation and grouping). More precisely, this talk presents 4 ways of improvement of the Naive Bayes classifier, in order to make this classifier more accurate while keeping its robustness.
Integrative analysis of transcriptomics and proteomics data with ArrayMining ...Natalio Krasnogor
These slides are part of a presentation I gave on March 2010 at the BioInformatics and Genome Research Open Club at the Weizmann Institute of Science, Israel.
In these slides my student and I describe two web-applications for microarray and gene/protein set analysis,
ArrayMining.net and TopoGSA. These use ensemble and consensus methods as well as the
possibility of modular combinations of different analysis techniques for an integrative view of
(microarray-based) gene sets, interlinking transcriptomics with proteomics data sources. This integrative process uses tools from different fields, e.g. statistics, optimisation and network
topological studies. As an example for these integrative techniques, we use a microarray
consensus-clustering approach based on Simulated Annealing, which is part of the ArrayMining.net
Class Discovery Analysis module, and show how this approach can be combined in a modular
fashion with a prior gene set analysis. The results reveal that improved cluster validity indices can be obtained by merging the two methods, and provide pointers to distinct sub-classes within pre-defined tumour categories for a breast cancer dataset by the Nottingham Queens Medical Centre.
In the second part of the talk, I show how results from a supervised
microarray feature selection analysis on ArrayMining.net can be investigated in further detail with
TopoGSA, a new web-tool for network topological analysis of gene/protein sets mapped on a
comprehensive human protein-protein interaction network. I discuss results from a TopoGSA
analysis of the complete set of genes currently known to be mutated in cancer.
Inria Tech Talk - La classification de données complexes avec MASSICCCStéphanie Roger
MASSICCC - Une plateforme SaaS pour le traitement de la classification de données complexes hétérogènes et incomplètes.
Dans ce Tech Talk venez découvrir, tester et apprendre à maîtriser MASSICCC (Massive clustering in cloud computing) une plateforme SaaS orientée utilisateurs, ainsi que ses trois familles d’algorithmes de #classification, fruits des dernières avancées des équipes de recherche Modal & Celeste de Inria, pour analyser et faire de l’apprentissage sur vos "Big Data" (ex : en immobilier, maintenance prédictive, santé, open data, etc. ).
MASSICCC c’est aussi :
- Un accès gratuit pour le test et la recherche sur https://massiccc.lille.inria.fr
- Un "one for all" de la classification
- Une forte interprétabilité des résultats (avec ses graphiques)
- Un mode SaaS qui vous permet un suivi des expériences (en cours ou terminées)
- Et des algorithmes open source qui sont réutilisables indépendamment.
Microarray Data Classification Using Support Vector MachineCSCJournals
DNA microarrays allow biologist to measure the expression of thousands of genes simultaneously on a small chip. These microarrays generate huge amount of data and new methods are needed to analyse them. In this paper, a new classification method based on support vector machine is proposed. The proposed method is used to classify gene expression data recorded on DNA microarrays. It is found that the proposed method is faster than neural network and the classification performance is not less than neural network.
Personal Brand Statement:
As an Army veteran dedicated to lifelong learning, I bring a disciplined, strategic mindset to my pursuits. I am constantly expanding my knowledge to innovate and lead effectively. My journey is driven by a commitment to excellence, and to make a meaningful impact in the world.
Memorandum Of Association Constitution of Company.pptseri bangash
www.seribangash.com
A Memorandum of Association (MOA) is a legal document that outlines the fundamental principles and objectives upon which a company operates. It serves as the company's charter or constitution and defines the scope of its activities. Here's a detailed note on the MOA:
Contents of Memorandum of Association:
Name Clause: This clause states the name of the company, which should end with words like "Limited" or "Ltd." for a public limited company and "Private Limited" or "Pvt. Ltd." for a private limited company.
https://seribangash.com/article-of-association-is-legal-doc-of-company/
Registered Office Clause: It specifies the location where the company's registered office is situated. This office is where all official communications and notices are sent.
Objective Clause: This clause delineates the main objectives for which the company is formed. It's important to define these objectives clearly, as the company cannot undertake activities beyond those mentioned in this clause.
www.seribangash.com
Liability Clause: It outlines the extent of liability of the company's members. In the case of companies limited by shares, the liability of members is limited to the amount unpaid on their shares. For companies limited by guarantee, members' liability is limited to the amount they undertake to contribute if the company is wound up.
https://seribangash.com/promotors-is-person-conceived-formation-company/
Capital Clause: This clause specifies the authorized capital of the company, i.e., the maximum amount of share capital the company is authorized to issue. It also mentions the division of this capital into shares and their respective nominal value.
Association Clause: It simply states that the subscribers wish to form a company and agree to become members of it, in accordance with the terms of the MOA.
Importance of Memorandum of Association:
Legal Requirement: The MOA is a legal requirement for the formation of a company. It must be filed with the Registrar of Companies during the incorporation process.
Constitutional Document: It serves as the company's constitutional document, defining its scope, powers, and limitations.
Protection of Members: It protects the interests of the company's members by clearly defining the objectives and limiting their liability.
External Communication: It provides clarity to external parties, such as investors, creditors, and regulatory authorities, regarding the company's objectives and powers.
https://seribangash.com/difference-public-and-private-company-law/
Binding Authority: The company and its members are bound by the provisions of the MOA. Any action taken beyond its scope may be considered ultra vires (beyond the powers) of the company and therefore void.
Amendment of MOA:
While the MOA lays down the company's fundamental principles, it is not entirely immutable. It can be amended, but only under specific circumstances and in compliance with legal procedures. Amendments typically require shareholder
Improving profitability for small businessBen Wann
In this comprehensive presentation, we will explore strategies and practical tips for enhancing profitability in small businesses. Tailored to meet the unique challenges faced by small enterprises, this session covers various aspects that directly impact the bottom line. Attendees will learn how to optimize operational efficiency, manage expenses, and increase revenue through innovative marketing and customer engagement techniques.
Enterprise Excellence is Inclusive Excellence.pdfKaiNexus
Enterprise excellence and inclusive excellence are closely linked, and real-world challenges have shown that both are essential to the success of any organization. To achieve enterprise excellence, organizations must focus on improving their operations and processes while creating an inclusive environment that engages everyone. In this interactive session, the facilitator will highlight commonly established business practices and how they limit our ability to engage everyone every day. More importantly, though, participants will likely gain increased awareness of what we can do differently to maximize enterprise excellence through deliberate inclusion.
What is Enterprise Excellence?
Enterprise Excellence is a holistic approach that's aimed at achieving world-class performance across all aspects of the organization.
What might I learn?
A way to engage all in creating Inclusive Excellence. Lessons from the US military and their parallels to the story of Harry Potter. How belt systems and CI teams can destroy inclusive practices. How leadership language invites people to the party. There are three things leaders can do to engage everyone every day: maximizing psychological safety to create environments where folks learn, contribute, and challenge the status quo.
Who might benefit? Anyone and everyone leading folks from the shop floor to top floor.
Dr. William Harvey is a seasoned Operations Leader with extensive experience in chemical processing, manufacturing, and operations management. At Michelman, he currently oversees multiple sites, leading teams in strategic planning and coaching/practicing continuous improvement. William is set to start his eighth year of teaching at the University of Cincinnati where he teaches marketing, finance, and management. William holds various certifications in change management, quality, leadership, operational excellence, team building, and DiSC, among others.
Digital Transformation and IT Strategy Toolkit and TemplatesAurelien Domont, MBA
This Digital Transformation and IT Strategy Toolkit was created by ex-McKinsey, Deloitte and BCG Management Consultants, after more than 5,000 hours of work. It is considered the world's best & most comprehensive Digital Transformation and IT Strategy Toolkit. It includes all the Frameworks, Best Practices & Templates required to successfully undertake the Digital Transformation of your organization and define a robust IT Strategy.
Editable Toolkit to help you reuse our content: 700 Powerpoint slides | 35 Excel sheets | 84 minutes of Video training
This PowerPoint presentation is only a small preview of our Toolkits. For more details, visit www.domontconsulting.com
Skye Residences | Extended Stay Residences Near Toronto Airportmarketingjdass
Experience unparalleled EXTENDED STAY and comfort at Skye Residences located just minutes from Toronto Airport. Discover sophisticated accommodations tailored for discerning travelers.
Website Link :
https://skyeresidences.com/
https://skyeresidences.com/about-us/
https://skyeresidences.com/gallery/
https://skyeresidences.com/rooms/
https://skyeresidences.com/near-by-attractions/
https://skyeresidences.com/commute/
https://skyeresidences.com/contact/
https://skyeresidences.com/queen-suite-with-sofa-bed/
https://skyeresidences.com/queen-suite-with-sofa-bed-and-balcony/
https://skyeresidences.com/queen-suite-with-sofa-bed-accessible/
https://skyeresidences.com/2-bedroom-deluxe-queen-suite-with-sofa-bed/
https://skyeresidences.com/2-bedroom-deluxe-king-queen-suite-with-sofa-bed/
https://skyeresidences.com/2-bedroom-deluxe-queen-suite-with-sofa-bed-accessible/
#Skye Residences Etobicoke, #Skye Residences Near Toronto Airport, #Skye Residences Toronto, #Skye Hotel Toronto, #Skye Hotel Near Toronto Airport, #Hotel Near Toronto Airport, #Near Toronto Airport Accommodation, #Suites Near Toronto Airport, #Etobicoke Suites Near Airport, #Hotel Near Toronto Pearson International Airport, #Toronto Airport Suite Rentals, #Pearson Airport Hotel Suites
What are the main advantages of using HR recruiter services.pdfHumanResourceDimensi1
HR recruiter services offer top talents to companies according to their specific needs. They handle all recruitment tasks from job posting to onboarding and help companies concentrate on their business growth. With their expertise and years of experience, they streamline the hiring process and save time and resources for the company.
Discover the innovative and creative projects that highlight my journey throu...dylandmeas
Discover the innovative and creative projects that highlight my journey through Full Sail University. Below, you’ll find a collection of my work showcasing my skills and expertise in digital marketing, event planning, and media production.
Falcon stands out as a top-tier P2P Invoice Discounting platform in India, bridging esteemed blue-chip companies and eager investors. Our goal is to transform the investment landscape in India by establishing a comprehensive destination for borrowers and investors with diverse profiles and needs, all while minimizing risk. What sets Falcon apart is the elimination of intermediaries such as commercial banks and depository institutions, allowing investors to enjoy higher yields.
Tata Group Dials Taiwan for Its Chipmaking Ambition in Gujarat’s DholeraAvirahi City Dholera
The Tata Group, a titan of Indian industry, is making waves with its advanced talks with Taiwanese chipmakers Powerchip Semiconductor Manufacturing Corporation (PSMC) and UMC Group. The goal? Establishing a cutting-edge semiconductor fabrication unit (fab) in Dholera, Gujarat. This isn’t just any project; it’s a potential game changer for India’s chipmaking aspirations and a boon for investors seeking promising residential projects in dholera sir.
Visit : https://www.avirahi.com/blog/tata-group-dials-taiwan-for-its-chipmaking-ambition-in-gujarats-dholera/
Tata Group Dials Taiwan for Its Chipmaking Ambition in Gujarat’s Dholera
MeV: Joe White
1. Analysis of Multiple Experiments TIGR Multiple Experiment Viewer (MeV) Joseph White DFCI January 24,2008
2.
3.
4. The Expression Matrix is a representation of data from multiple microarray experiments. Each element is a log ratio (usually log 2 (Cy5 / Cy3) ) Red indicates a positive log ratio, i.e, Cy5 > Cy3 Green indicates a negative log ratio , i.e., Cy5 < Cy3 Black indicates a log ratio of zero, i. e., Cy5 and Cy3 are very close in value Gray indicates missing data Exp 1 Exp 2 Exp 3 Exp 4 Exp 5 Exp 6 Gene 1 Gene 2 Gene 3 Gene 4 Gene 5 Gene 6
7. Distance and Similarity -the ability to calculate a distance (or similarity, it’s inverse) between two expression vectors is fundamental to clustering algorithms -distance between vectors is the basis upon which decisions are made when grouping similar patterns of expression -selection of a distance metric defines the concept of distance
8.
9. Distance is Defined by a Metric 4.2 1.4 -1.00 -0.90 Euclidean Pearson(r*-1) Distance Metric : D D
10. Normal distribution X = μ (mean of the distribution) σ = std. deviation of the distribution
![MeV ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]](data:image/gif;base64,R0lGODlhAQABAIAAAAAAAP///yH5BAEAAAAALAAAAAABAAEAAAIBRAA7)