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MAGE and the Biospecimen Research Database Experiment Design and other issues Ian Fore, D.Phil U.S. National Cancer Institute - Center for Bioinformatics Incorporating material from NCI Office of Biorepositories and Biospecimen Research January 24, 2008
Why? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Pre- and Post- Acquisition Variables Impact Clinical and Research Outcomes ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Variables of Biospecimen Acquisition ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Use case 1 ,[object Object],[object Object],[object Object]
Experiment design - example ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
Dose in protocol text - 200 mg/kg/day ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Dose in protocol text - 400 mg/kg/day ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Use case 2 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Experiment design - example ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Experiment design - example ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Use case 3 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Use case 4 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Use case 5 ,[object Object],[object Object]
MAGE-ML overhead

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caBIG: Ian Fore

  • 1. MAGE and the Biospecimen Research Database Experiment Design and other issues Ian Fore, D.Phil U.S. National Cancer Institute - Center for Bioinformatics Incorporating material from NCI Office of Biorepositories and Biospecimen Research January 24, 2008
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