1. The document summarizes research on the 5-HT2A serotonin receptor and its interaction with the hallucinogenic drug LSD. It discusses the structure of serotonin receptors and the 5-HT2A receptor specifically.
2. Molecular modeling and simulations have been used to study the 5-HT2A receptor since its exact structure is unknown. These suggest ligand binding causes shifts in the receptor's transmembrane helices that tighten the binding site.
3. Key interactions between LSD and the 5-HT2A receptor are thought to involve hydrogen bonding between the ligand's N-benzyl group and a tyrosine residue on the receptor.
Physiological and behavioral markers of stress in zebrafishCaio Maximino
The document summarizes research on physiological and behavioral markers of stress in zebrafish. It discusses how (1) stress is linked to anxiety disorders in mammals and different tests are used to study anxiety in zebrafish, (2) the serotonergic and dopaminergic systems are organized in zebrafish, sometimes with extra nuclei or gene duplications compared to mammals, and (3) various drugs affect zebrafish anxiety-like behavior and brain monoamine levels in different ways. The research also examines how alarm substances and serotonin modulate stress responses and cortisol release in zebrafish. In summary, the document reviews what is known about stress and monoamine systems in zebrafish and areas that require more research.
Are chemokines the third major system in the brain 1204.fullElsa von Licy
This document discusses the potential role of chemokines as a third major transmitter system in the brain, alongside neurotransmitters and neuropeptides. It provides evidence that:
1) Chemokines and their receptors are unevenly distributed in the brain in areas like the hypothalamus and hippocampus, similar to neurotransmitter systems.
2) Chemokine receptors can heterologously desensitize opioid receptors, diminishing their analgesic effects, through a reversible phosphorylation process.
3) This suggests the chemokine system interacts functionally with neurotransmitter systems and plays a role in brain development and function beyond inflammation, supporting the hypothesis that chemokines represent a third major transmitter system in the brain.
This document discusses ligand-receptor interactions, using estrogen receptor and estrogen as an example. It describes how ligands bind to specific receptors on target cells, inducing a conformational change and cellular response. It then details the domains of estrogen receptors, how estrogen binds and activates the receptors, and the role of the receptor domains in transcription. The discussion includes examples of covalent and non-covalent ligand-receptor interactions.
The document discusses the Hill equation, which was formulated by Archibald Hill in 1910 to describe the sigmoidal oxygen binding curve of hemoglobin. The Hill equation can be used to describe the fraction of a macromolecule saturated by a ligand as a function of the ligand's concentration. It is useful for determining the degree of cooperativity between ligand binding sites. A Hill coefficient of n > 1 indicates positively cooperative binding, n < 1 indicates negatively cooperative binding, and n = 1 indicates noncooperative binding.
Proteins interact with other molecules through various types of binding. Reversible binding allows proteins to transport molecules like oxygen, with hemoglobin binding oxygen through a heme group. Binding can be allosteric, affecting other sites; or cooperative, where ligand binding causes conformational changes influencing additional binding. The protein structure complements the ligand, precisely matching its shape and chemistry. Quantitative analyses describe these interactions through equilibrium constants and binding curves.
- Proteins have primary, secondary, tertiary, and sometimes quaternary structures that are formed through interactions like hydrogen bonding, disulfide bonds, and Vander Waals forces. These interactions determine a protein's 3D shape.
- Common drug targets include transport proteins, which shuttle molecules across cell membranes, enzymes, which catalyze reactions, and receptors, which receive signals from outside cells. Tubulin is also targeted as it makes up microtubules essential for cell division.
- Protein-protein interactions mediate many cell processes and are potential drug targets. Proteomics studies novel proteins discovered through genomics.
This is based on protein-ligand interaction physical method, which gives us knowledge about how our body protein interacts with other molecule and protein function.
Enzymes are protein catalysts that speed up biochemical reactions without being consumed. They achieve this by lowering the activation energy of reactions. Enzymes are very specific and only catalyze one or a few reactions. The active site of an enzyme is where substrates bind and reactions occur. Many factors can influence an enzyme's activity, such as temperature, pH, substrate/product concentration, and inhibitors. Enzymes work by reducing the energy needed for reactions to occur and stabilizing the transition state.
Physiological and behavioral markers of stress in zebrafishCaio Maximino
The document summarizes research on physiological and behavioral markers of stress in zebrafish. It discusses how (1) stress is linked to anxiety disorders in mammals and different tests are used to study anxiety in zebrafish, (2) the serotonergic and dopaminergic systems are organized in zebrafish, sometimes with extra nuclei or gene duplications compared to mammals, and (3) various drugs affect zebrafish anxiety-like behavior and brain monoamine levels in different ways. The research also examines how alarm substances and serotonin modulate stress responses and cortisol release in zebrafish. In summary, the document reviews what is known about stress and monoamine systems in zebrafish and areas that require more research.
Are chemokines the third major system in the brain 1204.fullElsa von Licy
This document discusses the potential role of chemokines as a third major transmitter system in the brain, alongside neurotransmitters and neuropeptides. It provides evidence that:
1) Chemokines and their receptors are unevenly distributed in the brain in areas like the hypothalamus and hippocampus, similar to neurotransmitter systems.
2) Chemokine receptors can heterologously desensitize opioid receptors, diminishing their analgesic effects, through a reversible phosphorylation process.
3) This suggests the chemokine system interacts functionally with neurotransmitter systems and plays a role in brain development and function beyond inflammation, supporting the hypothesis that chemokines represent a third major transmitter system in the brain.
This document discusses ligand-receptor interactions, using estrogen receptor and estrogen as an example. It describes how ligands bind to specific receptors on target cells, inducing a conformational change and cellular response. It then details the domains of estrogen receptors, how estrogen binds and activates the receptors, and the role of the receptor domains in transcription. The discussion includes examples of covalent and non-covalent ligand-receptor interactions.
The document discusses the Hill equation, which was formulated by Archibald Hill in 1910 to describe the sigmoidal oxygen binding curve of hemoglobin. The Hill equation can be used to describe the fraction of a macromolecule saturated by a ligand as a function of the ligand's concentration. It is useful for determining the degree of cooperativity between ligand binding sites. A Hill coefficient of n > 1 indicates positively cooperative binding, n < 1 indicates negatively cooperative binding, and n = 1 indicates noncooperative binding.
Proteins interact with other molecules through various types of binding. Reversible binding allows proteins to transport molecules like oxygen, with hemoglobin binding oxygen through a heme group. Binding can be allosteric, affecting other sites; or cooperative, where ligand binding causes conformational changes influencing additional binding. The protein structure complements the ligand, precisely matching its shape and chemistry. Quantitative analyses describe these interactions through equilibrium constants and binding curves.
- Proteins have primary, secondary, tertiary, and sometimes quaternary structures that are formed through interactions like hydrogen bonding, disulfide bonds, and Vander Waals forces. These interactions determine a protein's 3D shape.
- Common drug targets include transport proteins, which shuttle molecules across cell membranes, enzymes, which catalyze reactions, and receptors, which receive signals from outside cells. Tubulin is also targeted as it makes up microtubules essential for cell division.
- Protein-protein interactions mediate many cell processes and are potential drug targets. Proteomics studies novel proteins discovered through genomics.
This is based on protein-ligand interaction physical method, which gives us knowledge about how our body protein interacts with other molecule and protein function.
Enzymes are protein catalysts that speed up biochemical reactions without being consumed. They achieve this by lowering the activation energy of reactions. Enzymes are very specific and only catalyze one or a few reactions. The active site of an enzyme is where substrates bind and reactions occur. Many factors can influence an enzyme's activity, such as temperature, pH, substrate/product concentration, and inhibitors. Enzymes work by reducing the energy needed for reactions to occur and stabilizing the transition state.
Protein ligands bind to specific sites on proteins. Common protein ligands include antibodies and molecules like nucleic acids and peptides. Main methods to study protein-ligand interactions are spectroscopic techniques like fluorescence spectroscopy and structural methods like X-ray crystallography and NMR spectroscopy. Protein-ligand interactions are crucial for processes in living organisms as they allow for molecular recognition and signal transmission essential to biological functions.
Enzymes are protein molecules that act as biological catalysts. They specifically bind with substrate molecules to form enzyme-substrate complexes. Enzymes are not consumed in reactions but can be used repeatedly by lowering the activation energy required. Without enzymes, reactions would occur slowly as they require energy to break and reform chemical bonds. Enzymes achieve catalysis through an induced-fit model where the active site is flexible and molds closer to the substrate.
This document provides an overview of allosteric enzymes. It defines allosteric enzymes as enzymes whose activity is regulated by the binding of allosteric effectors at sites other than the active site. There are two types of allosteric effectors - positive effectors that increase enzyme activity and negative effectors that decrease it. Allosteric enzymes display cooperative binding and sigmoidal kinetics. They are classified as K-class or V-class depending on whether the effector changes the Km or Vmax value. Models like the Monod-Wyman-Changeux model and Koshland-Nemethy-Filmer model are described as proposed mechanisms for allosteric regulation. Aspartate transcarbamoylase
This document discusses allosteric enzymes, which have an additional regulatory site besides the active site. Allosteric enzymes are often oligomeric and have quaternary structure. The binding of effectors like allosteric inhibitors or activators at the regulatory site causes a conformational change that increases or decreases the enzyme's activity. Key metabolic enzymes are often regulated allosterically, allowing feedback inhibition that efficiently controls biochemical pathways. Examples of allosterically regulated enzymes include aspartate transcarbamylase and HMG-CoA reductase.
Reversible and irreversible enzyme inhibitors can be classified based on their binding interactions with enzymes. Reversible inhibitors form non-covalent complexes with enzymes and their activity can be restored upon removal of the inhibitor. Irreversible inhibitors form covalent bonds and permanently inactivate the enzyme. Reversible inhibitors include competitive inhibitors, which bind the active site, non-competitive inhibitors, which bind elsewhere and alter the enzyme's shape, and uncompetitive inhibitors, which only bind the enzyme-substrate complex. Irreversible inhibitors are either active site directed, covalently binding the active site, or suicide inhibitors, which are transformed by the enzyme into a reactive molecule that inactivates it. The Michaelis-Menten equation
Tarakeswar Patel presented on steroid hormone signaling for their M.Sc 2nd semester course guided by their professor. The presentation contained information on what steroids and steroid hormones are, the different types of steroid hormones, how steroid hormones are synthesized and transported, and the genomic and non-genomic pathways of steroid signaling. Steroid hormones signal to cells through both slow genomic pathways that alter gene transcription and protein levels, as well as faster non-genomic pathways that can involve cell surface receptors or affect intracellular processes like ion channels.
This document provides an introduction to enzymes. It defines enzymes and related terms, describes enzyme structure and mechanism of action. The key points are:
- Enzymes are protein catalysts that lower the activation energy of biochemical reactions. They have an active site that binds to specific substrates.
- Enzymes may contain cofactors like prosthetic groups or coenzymes that are necessary for their catalytic activity.
- The lock and key and induced fit models describe how enzymes bind substrates in their active site specifically to catalyze reactions. Enzymes can be classified based on the type of reaction they catalyze.
Enzymes are proteins that act as catalysts to speed up biochemical reactions in living organisms. They are essential for functions like digestion, metabolism, and cellular processes. Lyases are a class of enzymes that break carbon-carbon or carbon-nitrogen bonds through reactions that require only one substrate. They play important roles in processes like carbohydrate and fat metabolism. Catalysts like enzymes lower the activation energy needed for reactions to occur, accelerating both the forward and reverse reactions. However, enzymes can become denatured and lose their shape and function if the temperature or pH changes beyond their optimal ranges.
Some of the enzyme possess additional sites, known as allosteric sites besides the active site . Such as know as allosteric enzyme. The allosteric sites are unique place on the enzyme molecules allosteric enzyme have one or more allosteric site.
HISTRY
The term allosteric has been introduced by the two Noble Laureates JACOB AND MONOD to denote an enzyme site different from the active site which non competitively bands molecule other than the substrate and may influence the enzyme activity.
Properties of allosteric enzyme
Effector may be positive or negative, this effector regulate the enzyme activity . The enzyme activity is increased when a positive allosteric effector binds at the allosteric site known as activator site. On the other hand negative allosteric effector bind at the allosteric site called inhibitor site and inhibit the enzyme activity
This document discusses enzymes and their mechanisms of action. It defines enzymes as protein catalysts that speed up chemical reactions. All enzymes have an active site where substrates bind. Enzymes decrease the activation energy needed for reactions to occur by properly orienting substrates. This allows reactions to proceed more rapidly. The document contrasts uncatalyzed reactions, which require high activation energies due to hydrated substrates, with enzyme-catalyzed reactions. It describes several mechanisms by which enzymes catalyze reactions, such as sequentially binding substrates and releasing products or forming covalent intermediates. Coenzymes, which transfer atoms or electrons, are also discussed. Coenzymes can be either soluble vitamins that dissociate from enzymes or prosthetic
Enzymes are biological catalysts that speed up reactions by lowering their activation energy. They have an active site that binds to specific substrate molecules. The rate of enzymatic reactions is affected by temperature, pH, and substrate concentration. Temperature and pH can cause enzymes to denature and lose their structure and function. Immobilized enzymes are used widely in industry, such as lactase to produce lactose-free milk for those who are lactose intolerant. Students should design experiments to test how temperature, pH, and substrate concentration impact enzyme activity rates.
This document discusses allosteric enzymes, which have additional binding sites called allosteric sites that are distinct from the active site. Molecules that bind to these allosteric sites, called effectors, can cause a conformational change in the enzyme's structure that increases or decreases its catalytic activity. There are two main models that describe the mechanism of allostery: the concerted model proposed by Monod, Wyman, and Changeux and the sequential model proposed by Koshland, Nemethy, and Filmer. Allosteric effectors can be positive or negative, and allosteric regulation can be homotropic, involving the substrate, or heterotropic, involving a different molecule. Allo
2014 Undergraduate Research Forum PosterMatthew Kim
This study aims to determine the thermodynamics of protein-ligand interactions between ligands and mouse major urinary protein-I (MUP-I), which functions to transport pheromones. MUP-I exhibits a non-classical hydrophobic effect where binding is driven enthalpically rather than entropically. An analogue of a high-binding ligand was synthesized, and it was predicted that its unique structure could increase enthalpic stabilization and binding affinity compared to the original ligand. Isothermal titration calorimetry was used to introduce ligands to MUP-I and measure the heat released upon binding to determine thermodynamic values and reveal the driving forces of ligand binding.
Enzymes catalyze chemical reactions in living cells. Understanding how enzymes work allows rational drug design of enzyme inhibitors. Enzymes lower the transition state energy of reactions, accelerating rates. Studying enzyme kinetics using Michaelis-Menten equations reveals how substrates and inhibitors interact with enzymes. Different inhibitor types - competitive, non-competitive, uncompetitive - bind enzymes in distinct ways to slow reactions. Transition state analogs that mimic enzyme-substrate interactions make potent inhibitors.
Enzymes speed up chemical reactions in cells by lowering the activation energy needed for reactions to occur. They are protein catalysts that are highly specific to their substrate. The induced fit theory updated the lock and key concept of enzyme-substrate binding by proposing that enzymes change shape upon substrate binding to stabilize the transition state of the reaction. Factors like pH, temperature, and enzyme denaturation can affect enzyme activity levels.
Enzymes are biological catalysts. They are involved in all metabolic reactions inside the body. But we know that for the normal working of a body we do not require every metabolism to take place at a particular time. Thus, there must be a regulative mechanism for the enzymes.
How is these enzymes regulated? Let's explore molecular details and the biochemistry behind it
Call Now9717618797 is a phone number that is provided for contacting purposes 24 hours a day, 7 days a week. The document repeats the phone number 9717618797 twice and states it can be called 24X7, indicating the number is available at any time.
Matthew Agnese seeks a position utilizing his education and experience in strategy development and execution. He has over 15 years of experience implementing and managing clinical and administrative systems across multiple healthcare organizations. Agnese has a proven track record of redesigning systems and processes to enhance compliance, utilization, and operational success through strategic partnerships and key performance indicators. He holds an MBA and Bachelor's degree in Supply Chain and Operations Management.
Protein ligands bind to specific sites on proteins. Common protein ligands include antibodies and molecules like nucleic acids and peptides. Main methods to study protein-ligand interactions are spectroscopic techniques like fluorescence spectroscopy and structural methods like X-ray crystallography and NMR spectroscopy. Protein-ligand interactions are crucial for processes in living organisms as they allow for molecular recognition and signal transmission essential to biological functions.
Enzymes are protein molecules that act as biological catalysts. They specifically bind with substrate molecules to form enzyme-substrate complexes. Enzymes are not consumed in reactions but can be used repeatedly by lowering the activation energy required. Without enzymes, reactions would occur slowly as they require energy to break and reform chemical bonds. Enzymes achieve catalysis through an induced-fit model where the active site is flexible and molds closer to the substrate.
This document provides an overview of allosteric enzymes. It defines allosteric enzymes as enzymes whose activity is regulated by the binding of allosteric effectors at sites other than the active site. There are two types of allosteric effectors - positive effectors that increase enzyme activity and negative effectors that decrease it. Allosteric enzymes display cooperative binding and sigmoidal kinetics. They are classified as K-class or V-class depending on whether the effector changes the Km or Vmax value. Models like the Monod-Wyman-Changeux model and Koshland-Nemethy-Filmer model are described as proposed mechanisms for allosteric regulation. Aspartate transcarbamoylase
This document discusses allosteric enzymes, which have an additional regulatory site besides the active site. Allosteric enzymes are often oligomeric and have quaternary structure. The binding of effectors like allosteric inhibitors or activators at the regulatory site causes a conformational change that increases or decreases the enzyme's activity. Key metabolic enzymes are often regulated allosterically, allowing feedback inhibition that efficiently controls biochemical pathways. Examples of allosterically regulated enzymes include aspartate transcarbamylase and HMG-CoA reductase.
Reversible and irreversible enzyme inhibitors can be classified based on their binding interactions with enzymes. Reversible inhibitors form non-covalent complexes with enzymes and their activity can be restored upon removal of the inhibitor. Irreversible inhibitors form covalent bonds and permanently inactivate the enzyme. Reversible inhibitors include competitive inhibitors, which bind the active site, non-competitive inhibitors, which bind elsewhere and alter the enzyme's shape, and uncompetitive inhibitors, which only bind the enzyme-substrate complex. Irreversible inhibitors are either active site directed, covalently binding the active site, or suicide inhibitors, which are transformed by the enzyme into a reactive molecule that inactivates it. The Michaelis-Menten equation
Tarakeswar Patel presented on steroid hormone signaling for their M.Sc 2nd semester course guided by their professor. The presentation contained information on what steroids and steroid hormones are, the different types of steroid hormones, how steroid hormones are synthesized and transported, and the genomic and non-genomic pathways of steroid signaling. Steroid hormones signal to cells through both slow genomic pathways that alter gene transcription and protein levels, as well as faster non-genomic pathways that can involve cell surface receptors or affect intracellular processes like ion channels.
This document provides an introduction to enzymes. It defines enzymes and related terms, describes enzyme structure and mechanism of action. The key points are:
- Enzymes are protein catalysts that lower the activation energy of biochemical reactions. They have an active site that binds to specific substrates.
- Enzymes may contain cofactors like prosthetic groups or coenzymes that are necessary for their catalytic activity.
- The lock and key and induced fit models describe how enzymes bind substrates in their active site specifically to catalyze reactions. Enzymes can be classified based on the type of reaction they catalyze.
Enzymes are proteins that act as catalysts to speed up biochemical reactions in living organisms. They are essential for functions like digestion, metabolism, and cellular processes. Lyases are a class of enzymes that break carbon-carbon or carbon-nitrogen bonds through reactions that require only one substrate. They play important roles in processes like carbohydrate and fat metabolism. Catalysts like enzymes lower the activation energy needed for reactions to occur, accelerating both the forward and reverse reactions. However, enzymes can become denatured and lose their shape and function if the temperature or pH changes beyond their optimal ranges.
Some of the enzyme possess additional sites, known as allosteric sites besides the active site . Such as know as allosteric enzyme. The allosteric sites are unique place on the enzyme molecules allosteric enzyme have one or more allosteric site.
HISTRY
The term allosteric has been introduced by the two Noble Laureates JACOB AND MONOD to denote an enzyme site different from the active site which non competitively bands molecule other than the substrate and may influence the enzyme activity.
Properties of allosteric enzyme
Effector may be positive or negative, this effector regulate the enzyme activity . The enzyme activity is increased when a positive allosteric effector binds at the allosteric site known as activator site. On the other hand negative allosteric effector bind at the allosteric site called inhibitor site and inhibit the enzyme activity
This document discusses enzymes and their mechanisms of action. It defines enzymes as protein catalysts that speed up chemical reactions. All enzymes have an active site where substrates bind. Enzymes decrease the activation energy needed for reactions to occur by properly orienting substrates. This allows reactions to proceed more rapidly. The document contrasts uncatalyzed reactions, which require high activation energies due to hydrated substrates, with enzyme-catalyzed reactions. It describes several mechanisms by which enzymes catalyze reactions, such as sequentially binding substrates and releasing products or forming covalent intermediates. Coenzymes, which transfer atoms or electrons, are also discussed. Coenzymes can be either soluble vitamins that dissociate from enzymes or prosthetic
Enzymes are biological catalysts that speed up reactions by lowering their activation energy. They have an active site that binds to specific substrate molecules. The rate of enzymatic reactions is affected by temperature, pH, and substrate concentration. Temperature and pH can cause enzymes to denature and lose their structure and function. Immobilized enzymes are used widely in industry, such as lactase to produce lactose-free milk for those who are lactose intolerant. Students should design experiments to test how temperature, pH, and substrate concentration impact enzyme activity rates.
This document discusses allosteric enzymes, which have additional binding sites called allosteric sites that are distinct from the active site. Molecules that bind to these allosteric sites, called effectors, can cause a conformational change in the enzyme's structure that increases or decreases its catalytic activity. There are two main models that describe the mechanism of allostery: the concerted model proposed by Monod, Wyman, and Changeux and the sequential model proposed by Koshland, Nemethy, and Filmer. Allosteric effectors can be positive or negative, and allosteric regulation can be homotropic, involving the substrate, or heterotropic, involving a different molecule. Allo
2014 Undergraduate Research Forum PosterMatthew Kim
This study aims to determine the thermodynamics of protein-ligand interactions between ligands and mouse major urinary protein-I (MUP-I), which functions to transport pheromones. MUP-I exhibits a non-classical hydrophobic effect where binding is driven enthalpically rather than entropically. An analogue of a high-binding ligand was synthesized, and it was predicted that its unique structure could increase enthalpic stabilization and binding affinity compared to the original ligand. Isothermal titration calorimetry was used to introduce ligands to MUP-I and measure the heat released upon binding to determine thermodynamic values and reveal the driving forces of ligand binding.
Enzymes catalyze chemical reactions in living cells. Understanding how enzymes work allows rational drug design of enzyme inhibitors. Enzymes lower the transition state energy of reactions, accelerating rates. Studying enzyme kinetics using Michaelis-Menten equations reveals how substrates and inhibitors interact with enzymes. Different inhibitor types - competitive, non-competitive, uncompetitive - bind enzymes in distinct ways to slow reactions. Transition state analogs that mimic enzyme-substrate interactions make potent inhibitors.
Enzymes speed up chemical reactions in cells by lowering the activation energy needed for reactions to occur. They are protein catalysts that are highly specific to their substrate. The induced fit theory updated the lock and key concept of enzyme-substrate binding by proposing that enzymes change shape upon substrate binding to stabilize the transition state of the reaction. Factors like pH, temperature, and enzyme denaturation can affect enzyme activity levels.
Enzymes are biological catalysts. They are involved in all metabolic reactions inside the body. But we know that for the normal working of a body we do not require every metabolism to take place at a particular time. Thus, there must be a regulative mechanism for the enzymes.
How is these enzymes regulated? Let's explore molecular details and the biochemistry behind it
Call Now9717618797 is a phone number that is provided for contacting purposes 24 hours a day, 7 days a week. The document repeats the phone number 9717618797 twice and states it can be called 24X7, indicating the number is available at any time.
Matthew Agnese seeks a position utilizing his education and experience in strategy development and execution. He has over 15 years of experience implementing and managing clinical and administrative systems across multiple healthcare organizations. Agnese has a proven track record of redesigning systems and processes to enhance compliance, utilization, and operational success through strategic partnerships and key performance indicators. He holds an MBA and Bachelor's degree in Supply Chain and Operations Management.
The document is a resume for Lee Clark Davenport, who has over 3 years of experience driving and operating heavy equipment including tractor trailers, cranes, and forklifts. He has held roles as a route driver, coiled tubing operator, bulk fuel specialist, and weather observation meteorological technician. His experience includes commercial driving licenses with hazmat and tanker endorsements as well as supervising and training roles in the US Marine Corps and Army National Guard.
Aladefa Habeeb Adeyemi is seeking a position that allows him to utilize his skills and advance his career. He has over 5 years of experience in hospitality roles such as receptionist, porter, concierge, and front desk officer. He is resourceful, proactive, and able to work well under pressure. He has a diploma in Business Administration and has also worked as a teacher and salon manager. He is looking to contribute his skills and knowledge to further his career development and growth opportunities.
Avatar-mediation and transformation of practice in a 3D virtual world - meani...Marianne Riis
This document summarizes Marianne Riis's PhD defense presentation on avatar-mediation and the transformation of practice in the 3D virtual world Second Life. The summary includes:
1) Riis's research questions focused on how students respond to avatar-mediation and transformation of practice in Second Life, and how design can facilitate meaningful participation and reification for students.
2) Her methodology involved research-led action research over four cycles from 2007-2011 using grounded theory-inspired coding of qualitative data from observations, interviews, and documents.
3) Key findings included that a respectful remediation strategy alone was not effective, and that alignment with curricular goals, supporting identities, and in-world
The document summarizes a report analyzing the European Union's proposed "right to be forgotten" policy. The policy would allow individuals to request the deletion of personal information online if there are no legitimate grounds for retaining it. While strengthening data protection, the policy faces challenges in its broad scope, vague terminology, and lack of clarity around responsibilities. To be effective, the policy requires revisions to narrow its focus, better define key terms, and specify the duties of data controllers with respect to deletion requests. Concerns also exist that the policy could unintentionally curb freedom of expression unless implemented carefully.
This document analyzes the EU's proposed "right to be forgotten" data protection policy. It finds that the policy's scope is too broad and could lead to inconsistent enforcement. It also fails to clearly define responsibilities of data controllers or how to request erasure of information posted across multiple platforms. The policy risks being misused for censorship and poses a clash between EU and US views of free speech and privacy that could limit an open internet. Revisions are suggested to limit the policy's scope, clearly define situations for erasure, and address cross-posted information and data controller responsibilities.
This document presents a thesis on designing a Data Governance Maturity Model (DGMM) to assess organizational maturity of data governance. It begins with an introduction that establishes the background and relevance of the research. The objective is to define a framework for assessing data governance maturity and giving recommendations for organizational growth. A literature review is conducted to answer contextual and content questions. Based on the literature, a DGMM is designed with dimensions, levels, and criteria. Empirical research is then conducted by interviewing experts at a research organization to validate the DGMM. The results show that the DGMM is found to be relevant and valid for assessing data governance maturity. Some additions and adjustments to the model are also identified. In conclusion
Our cells are filled with intracellular and surface cell receptors (.docxaman341480
Our cells are filled with intracellular and surface cell receptors (Berg & Clarke, 2018). These receptor proteins are delineated by structure and bind to a variety of substances responsible for creating a reaction or lack thereof. When a ligand binds to the appropriate receptor, signal transduction activates the receptor and produces a biological response ( Berg & Clarke, 2018). Changes in shape or activity after binding allow signal transmission outside the cell or significant changes within the cell, creating an altered chemical when binding to a ligand-gated-ion channel ( Berg & Clarke, 2018). This post will discuss the agonist/ antagonist spectrum of psychopharmacological agents, G-proteins and ion-gated channels, and epigenetics and their relevance to practice.
Agonists act like ligands, binding to receptors and causing action (Berg & Clarke, 2018). Ligands or agonists consist of pharmaceuticals, drugs, light, hormones, and nerve impulses. Ligands and agonists jump in and out of receptors, increasing signaling or changes in the cell. Antagonists block the standard action of ligands, preventing a response from the receptor (Berg & Clarke, 2018). Competitive antagonists bind to receptors and prevent ligands from attaching to its preferred receptor, inhibiting stimulation, and leaving the receptor unchanged (Berg & Clarke, 2018). Naloxone is a competitive antagonist to opiate receptors London, 2017). The naloxone has a stronger affinity for the receptor, making it more desirable. The medication discontinues the effects of the opiates by taking their place on the receptor. The higher the dose of opiates circulating the more naloxone required. Due to the excess amount of continued competition for receptors, some patients require multiple doses of naloxone before regaining the ability to breath or regain consciousness (London, 2017).
G-protein coupled receptors (GPCRs) target 30-50% of psychotropic medications (Stahl, 2013). As the most abundant protein family, GPCR ligands include neurotransmitters such as serotonin, norepinepherine, and dopamine. After aligand binds to a GPCR, the GPCR undergoes a conformational change (London, 2017). Alpha subunit exchanges Guanyl nucleotide phosphates, GTP, GPP, and Alpha unit disassociates and regulates target proteins (London, 2017). Regulation of neurotransmission is imperative in medication management (London, 2017). The target proteins can then relay signals via a second messenger, and GTP is finally hydrolyzed to GPP (Lambert, 2004). G-protein receptors tend to have a delay in effect due to a requirement for the accumulation of changed cellular function (London, 2017).
Ion gated channel linked receptors open and close in response to a chemical message changing signal transduction in the synaptic cleft. These ion channels act like pores in the cellular membrane to allow ion passage (Stahl, 2013). Transmembrane ion channels open and close in response to the binding of a ligand, dif.
Acute and chronic effects of ethanol on learning related synaptic plasticityBARRY STANLEY 2 fasd
Alcoholism is associated with acute and long-term cognitive dysfunction including memory impairment, resulting in substantial disability and cost to society. Thus, understanding how ethanol impairs cognition is essential for developing treatment strategies to dampen its adverse impact.
Memory processing is thought to involve persistent, use-dependent changes in synaptic transmission, and ethanol alters the activity of multiple signaling molecules involved in synaptic processing, including modulation of the glutamate and gamma-aminobutyric acid (GABA) transmitter systems that mediate most fast excitatory and inhibitory transmission in the brain. Effects on glutamate and GABA receptors contribute to ethanol-induced changes in long-term potentiation (LTP) and long-term depression (LTD), forms of synaptic plasticity thought to underlie memory acquisition. In this paper, we review the effects of ethanol on learning-related forms of synaptic plasticity with emphasis on changes observed in the hippocampus, a brain region that is critical for encoding contextual and episodic memories. We also include studies in other brain regions as they pertain to altered cognitive
and mental function. Comparison of effects in the hippocampus to other brain regions is instructive for understanding the complexities of ethanol’s acute and long-term pharmacological consequences.
The document discusses opioid receptors and the drugs that interact with them. It describes how opioid receptors are G-protein coupled receptors with 7 transmembrane domains. The three main types of opioid receptors are mu, delta, and kappa, which are distributed throughout the central and peripheral nervous systems. Mu receptors are associated with analgesia, euphoria, and dependence. Delta receptors are related to dysphoria and analgesia. Kappa receptor mechanisms are poorly understood but may have psychomimetic effects. Opioid receptors act through second messenger systems to activate protein kinases and alter gene expression.
The document provides an overview of the endocrine system and hormone-receptor interactions. It describes the endocrine system's role in maintaining homeostasis through feedback loops and its effects on various physiological processes. Hormones can be classified into different categories based on their chemical structure and include peptides, proteins, steroids, and vitamin derivatives. Hormones act by binding to specific receptors located on cells and tissues, and receptor activation initiates intracellular signaling cascades that allow hormones to exert their effects. The hypothalamus and pituitary gland play central roles in regulating other endocrine glands.
This experiment studied the effects of stress during puberty using rat models. Rats were subjected to stressful events known as juvenile social subjugation to model stress during puberty. Autoradiography was used to visualize CRF1 and CRF2 receptors in the brain which are involved in the stress response. The results found that the basolateral nucleus of the amygdala primarily expressed CRF1 receptors, while the medial preoptic nucleus secondarily expressed these receptors. The medial preoptic nucleus also expressed CRF2 receptors, but not as intensely as CRF1 receptors. Expression of both receptors increased with age and was generally higher in females compared to males. This supported the idea that females have a more plastic
Brain Injury Enhances Fear Learning And Excitatory ProcessesKaren Gilchrist
Here are the key points I gathered from the case study:
- The patient is a 50-year-old female who underwent corrective surgery and had surgical incisions that required wound care.
- A study was cited that examined the effects of applying FGF2 (fibroblast growth factor 2) to surgical incisions to promote wound healing.
- In this case, the patient's incisions were treated with daily applications of FGF2 until the sutures were removed, starting from post-op day one.
- The wounds healed well with FGF2 treatment and required less frequent dressing changes than the control group who received standard wound care.
- FGF2 application accelerated wound healing in this patient as evidenced by
Nuclear receptors and chemical action in cnsMustafa Ijaz
Nuclear receptors are transcription factors that regulate gene expression in response to small molecules like steroid hormones. They play important roles in development, physiology, and disease. Nuclear receptors have several conserved domains including a DNA binding domain and ligand binding domain. They function by recruiting co-activators or co-repressors upon ligand binding in the nucleus to modify gene expression. Understanding drug action in the CNS is challenging due to its complexity. Drugs can target receptors, ion channels, enzymes, or carrier molecules to produce effects. Their long-term impacts may involve adaptive responses in gene expression over time.
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L Glastra Review of 5HT2A
1. 1
Structural and Functional Exploration of 5-HT2A and its
Response to Lysergic Acid Diethylamide (LSD)
Laura Glastra
Chemistry Department, Pacific Lutheran University, Tacoma WA 98477, USA
INTRODUCTION
Serotonin receptors are a class of G-protein coupled receptors (GPCRs). These serotonin
receptors are located in regions of the brain related to the visual cortex, limbic system,
basal ganglia, and olfactory nuclei (Frazer et al., 1999). The actions of different GPCRs
vary based on amino acid sequences and protein structures, which interact differently
based on the specific ligand. Ligands such as hallucinogens effect a wide range of
receptors including the majority of the serotonin family. The most potent known
hallucinogen, lysergic acid diethylamide (LSD), has a high affinity for the 2A serotonin
receptor (5-HT2A) (Nichols, 2012). LSD’s hallucinogenic effects would not be possible
without the 5-HT2A receptor, but the exact mechanism of action has not yet been
discovered. The following review is the product of extensive research into the various
known mechanisms that are involved in the binding and action of LSD with the 5-HT2A
receptor.
BACKGROUND
Serotonin, or 5-hydroxytryptamine (5-
HT), is a neurotransmitter derived from
the amino acid tryptophan (Nichols et
al., 2001) (Figure 1). It is found in the
brains of various organisms from
nematodes such as C. elegans to
vertebrates (Nichols et al., 2001). Its
function varies between organisms, and
in C. elegans it is responsible for egg
laying and other relatively simple
behaviors (Nichols et al., 2001). This
evolution history suggest that the
receptor is highly conserved. The focus
of this review will be on the action of the
human receptor. In humans, 5-HT is
involved with more complex behaviors
like sleep cycle, mood, and memory
(Nichols et al., 2001). Serotonin
neurons within vertebrates are all found
2. 2
throughout the raphe nuclei (RN)
(Nichols et al., 2001).
5-HT is an inhibitory transmitter that is
produced by neurons within the RN of
the midbrain (Nichols et al., 2001). The
RN branch from the brainstem and can
be found throughout the majority of the
brain (Nichols et al., 2001). It is thought
that the neurons located here may be
involved in inhibitory processes that
prevent the brain from overstimulation
(Nichols et al., 2001). When the activity
or production of 5-HT decreases it is no
longer effective at inhibiting other
neurons in the reaction chain (Nichols et
al., 2001). This results in the brain
becoming increasingly more active
(Nichols et al., 2001).
There are seven families, or groups, of
serotonin receptors ranging from 5-HT1
to 5-HT7 (Frazer et al., 1999). Of these
families of serotonin receptors, the 5-
HT1A, 5-HT1B, 5-HT1C, 5-HT1D, and 5-
HT2 belong to the G-protein receptor
superfamily (Frazer et al., 1999). Each of
these 5-HT families is a single-subunit
protein receptor (Frazer et al., 1999).
The 5-HT2A receptor is influenced by a
variety of hallucinogenic drugs (Nichols
et al., 2001). The effect of hallucinogenic
drugs would not be possible without the
5-HT2A receptor (Nichols et al., 2001).
The potency of hallucinogens can
therefore be determined by their affinity
for the 5-HT2A receptor (Nichols et al.,
2001).
The 5-HT2A receptor is highly
concentrated in the prefrontal cortex
and other areas of the brain’s cortical
regions (Frazer et al., 1999). Cortical
regions of the brain include the
claustrum which is connected to the
visual cortex, the limbic system involved
in the endocrine and autonomic nervous
system, which are involved in emotion,
learning, and memory function; the
basal ganglia that is responsible for
habit based learning and motor
behaviors, and the olfactory nuclei,
which are highly evolved in vertebrates
and are involved with odor information
processing (Frazer et al., 1999).
There are primarily three types of
chemicals that act as agonists for the 5-
HT2A receptor. These include
tryptamines, ergolines, and
phenethylamines (Figure 1).
Tryptamines are the agonists most
closely related to serotonin, which is the
natural neurotransmitter. Ergolines are
3. 3
tetracyclic molecules derived from
alkaloids in ergot fungus. An example of
such a molecule, the most potent of the
known psychedelics, is lysergic acid
diethylamide (LSD) (Nichols, 2012).
Some studies have proposed the
following to explain the general
mechanism of LSD’s effects on
serotonin:
In view of the localization of the
raphe nuclei close to the brain
stem’s consciousness-alerting
system, called the ascending
reticular activating system
(ARAS), it is suggested that LSD
could influence the gating
function of this system for
afferent sensory information.
Thus a reduction in serotonin
release mediated by inhibitory
presynaptic serotonin receptors
would be likely to reduce the
tonic inhibition in the ARAS due
to serotonin and thus allow
abnormal stimulation of the
visual and other relevant areas of
the brain, causing hallucination
(Bradford et al., 1986).
Structure of LSD.
LSD is a relatively planar molecule with
a molecular mass of 323 g/mol and
chirality at two positions in the molecule
(Nichols, 2012). These chiral centers are
at carbons 5 and 8, which have strong
influence over the psychoactive
properties of the molecule (Figure 2).
The carbons must be in a 5R, 8R -
configuration for LSD to be biologically
active. This relationship of configuration
and biological activity is seen
throughout all ergolines (Nichols, 2012).
There are many non-psychoactive forms
of LSD, however little research has been
done in clinical settings with the
exceptions of those that occurred in the
1950s and 1960s prior to the legal
changes that occurred in that 1970s.
These studies found that the
psychoactive and biologically active
properties of LSD change in response to
reduction of double bonds,
halogenation, and alkylation (Figure 2).
The (+)-LSD or d-LSD form is the
psychoactive form that had previously
been used for therapy. Epimerization of
LSD readily occurs at the 8-position,
producing (+)-isolysergic acid
diethylamide (Figure 2). This isomer is
not an active hallucinogen, further
supporting the importance of the
4. 4
specific configuration required at the 5
and 8 chiral carbons (Nichols, 2012).
Halogenating the 2-position of LSD
resulted in molecules that acted as
antagonists of the 5-HT2A receptor,
rather than agonists such as (+)-LSD
(Figure 2). Antagonists such as these
molecules act to inhibit binding of
serotonin (Nichols, 2012).
Reduction of the 9,10-double bond was
another alteration made to LSD in early
research (Figure 2). This reduction also
removed the hallucinogenic activity of
the molecule. In tryptamines, similar
reductions of the highest pi-bond
orbitals did not have the same effect on
hallucinogenic activity. This signifies
that the 9,10-double bond is an
important characteristic of the
molecule’s psychoactive properties,
though it is unclear why (Nichols, D. E).
A reduction of the 2,3-double bond was
also conducted, and the molecule
remained biologically active afterwards
(Figure 2). The onset of the psychoactive
effects were slower, however, suggesting
that metabolic changes may alter the
conformation of the molecule in the
body. Hallucinogenic effects were still
reported, though it was found to be
approximately eight times less intense
than LSD itself (Nichols, 2012). This
reduction occurs on the indole group of
the LSD molecule. Some studies have
suggested that this functional group is a
distinguishing factor on how various
psychedelics function. LSD and other
hallucinogens with indole ring systems
preferentially inhibit cells from releasing
serotonin, rather than affecting the
serotonin receptors post synaptic
regulation (Passie, et. al.).
Alkylation of the N(6)-methyl group on
LSD has been found to produce much
more potent psychoactives in vitro
rodent behaviors. It is anticipated that
these effects on rodents are likely to be
comparable to those in humans
(Nichols, 2012).
Serotonin Receptor (5-HT2A)
Structure.
The serotonin receptor has a length of
471 amino acids and a molecular mass of
52,603 g/mol (Figure 3) (UniProt). It is
a G-protein coupled receptor (GPCR),
which stands for guanine nucleotide
triphosphate binding proteins. Of the
GPCR families, serotonin is in the
5. 5
largest, which is the Rhodopsin, or A
Family (Isberg et al., 2011). Previously it
was suggested that receptors produced
intracellular metabolites as a result of
ligand binding, but it is now believed
that GPCRs have the effect they do
because of interactions that occur
between the receptor with the G-protein
(Byrne et al., 2004). Interaction of the
G-protein with its coupled receptor
allows for modulation of different
effector systems such as ion channels,
adenylyl cyclase, and phospholipase C,
which the 5-HT2A receptors activate
(Frazer et al., 1999).
Characteristics of G-proteins include the
presence of seven transmembrane alpha
helices (TM1-TM7), an intracellular
carboxy terminus, and an extracellular
amino terminus. The most conserved
feature of GPCRs is the seven
transmembrane structure (Byrne et al.,
2004, J. H.). Each G-protein complex
has a specific receptor protein that
weaves through the seven
transmembrane segments. It is this
protein’s amino terminus that extends
out of the cell membrane, and its
carboxy terminus that is found inside
the cytoplasm of the cell. Intracellular
loops, or segments, of the protein are
found between TM1 and TM2, TM3 and
TM4, and TM5 and TM6. These
segments are denoted i1, i2, and i3
respectively. The extracellular loops are
connected between TM2 and TM3, TM4
and TM5, and TM6 and TM7. Similarly,
these are denoted as e1, e2, and e3
respectively (Byrne et al., 2004, J. H.)
(Figure 4).
The seven domains that the protein
wraps through are composed of about
24 hydrophobic amino acids. It is in the
center of these proteins where the
binding site is located. Amino acids of
the transmembrane domains point in
toward the binding site. These inward
pointing amino acids influence the
binding affinity of ligands (Byrne et al.,
2004, J. H.). These generalized
structural characteristics describe the
basic structure of the 5-HT2A receptor.
CURRENT RESEARCH
Current research on the 5-HT2A receptor
is limited because the exact structure
has not yet been identified. It has not
been identified exactly because X-ray
crystallography techniques are
especially challenging for membrane
proteins (Rodriguez et al., 2014).
6. 6
Without definitive knowledge of the
protein’s structure, little research has
been able to make conclusions on the
specific molecular function behind the
receptor’s mechanisms. The research
that will be explored in this review focus
on the methodology behind identifying
the structure and why LSD may have
such a high affinity for this receptor.
One approach made in identifying the
structure of 5-HT2A is using 5-HT2A
homology modeling. Homology
modeling begins with use of another
molecule sharing similar characteristics
to the receptor of interest. An inactive
β2-adrenoceptor (β2AR) was used and
then altered to fit characteristics of
active GPCR structures (Isberg et al.,
2011). Alterations to the β2AR were
made to adjust angle positioning of TM5
and TM6, alter the i3 segment sequence
from
LQKIDKSEGRFHVQNLSQVEQDGRTG
HGLRRSSKFCLK to AQQQESATTQKA,
insert a Gαs peptide backbone, and move
R1313.50 to a rotamer with interaction of
the G-protein (Figure 5) (Isberg et al.,
2011).
Models of 5-HT2A have been produced in
silico through steered molecular
dynamics simulations (Isberg et al.,
2011). Since structure of the receptor is
unknown, the model was steered
towards a structure that fit the
characteristics of known GPCRs.
Specific distance constraints were set for
bond lengths based on X-ray
crystallography and mutagenesis data.
These were included in the
simulations as pairwise (donor -
acceptor) atom distance
harmonic constraints (default
between hydrogen and acceptor:
1.8 Ǟ; G-protein and helix 8: 2.2
Ǟ; protonated nitrogen in ligand
and - D1553.32 gamma carbon: 3.0
Ǟ (Isberg et al., 2011).
These binding characteristics lead to
movement of helices and side-chains
energy changes. These changes are
thought to continue until the active form
of the molecule is achieved (Isberg et al.,
2011). In silico studies demonstrate the
importance of side-chain rotameric
actions. Change in rotameric position is
referred to as a “toggle switch”
(Tautermann et al., 2011). Toggling can
occur strongly in response to activation
7. 7
by agonists while the binding site holds
a similar conformation in the active and
inactive state (Tautermann et al., 2011).
Constraints imposed in the silico
modeling method include the
aforementioned binding lengths, ligand-
receptor binding, G-protein-receptor
binding, interhelical receptor binding,
and helical backbone binding of the
receptor and G-protein to prevent local
distortions and unfolding at truncated
sites (Isberg et al., 2011). Hydrogen
bonding was a key restriction emplaced
to stabilize hydrophobic networks
throughout the helices. These
constraints were imposed to activate the
receptor models.
Extracellular Face and Ligand
Binding Site.
Helical shifts induce tightening of the
overall binding site inside of the helices.
Tightening is required for proper
binding of the ligand to occur because of
the proximity and arrangement of the
ligand and receptor complex. (Isberg et
al., 2011; Shapiro et al., 2002). Changes
in proximity of the ligand and binding
site interactions occur because of side
chain rotations, helical tilting, and
helical rotating. The main observed
cause leading to activation of the
receptor occurs due to the rotations in
the side chains (Isberg et al., 2011). The
largest movements observed through the
molecular dynamics modeling occurred
when constraints were first
implemented and when the restraints of
the helical backbone were released
(Isberg et al., 2011).
The largest known movement of the
extracellular surface is an inward tilt of
TM6. Another movement is the shift of
TM3 moving closer to TM5 (Isberg et al.,
2011). Additionally, TM7 shifts to the
side toward TM1, likely occurring as a
response to make room for the
repositioning of TM6. As a result of the
TM7 shift, TM 1 and TM2 both shift
sideways as well. The shift of TM7 is
away from the ligand binding site, but
the helix maintains good hydrogen
bonding with N-benzyl groups of the
ligand. It is thought to be a tyrosine
molecule that induces hydrogen bonding
with the N-benzyl moiety (Isberg et al.,
2011).
The TM6 helix also has significant
interactions with the TM3 helix through
strong ionic forces (Shapiro et al.,
2002). Changes in movement of TM6
8. 8
are proposed to be a result of the
interaction the helix has during the
binding of the agonist (Shapiro et al.,
2002). This hypothesis has been tested
through site directed mutagenesis and
molecular modeling. This interaction
may proceed via aromatic residues of
TM6. The interactions and movement of
TM6 lead to disruptions in ionic
bonding between it and the TM3 helix.
This is hypothesized to be a wide
ranging interaction of agonist bound 5-
HT receptors that are coupled to G-
proteins given the similarities in amino
acid sequences of 5-HT receptors
(Shapiro et al., 2002).
It is possible these interactions are
through the side chains of the TM6
helix’s hydrophobic residues (Shapiro et
al., 2002). The TM6 helix has three
hydrophobic regions composed of
different combinations of cysteine,
arginine, isoleucine, leucine,
phenylalanine, tyrosine, valine, and
asparagine. Alanine substitution in these
three regions induces strong Van der
Waals forces with adjacent helices
through their residues (Shapiro et al.,
2002).
The ionic and hydrophobic interactions
that occur through residues within the
TM6 helix have key stabilizing effects for
the inactive 5-HT2A receptor (Shapiro et
al., 2002). When agonist binding occurs,
TM6 does not maintain its stabilizing
properties, and activation of the
receptor begins.
Side chain interactions are important
because of changes in hydrogen bonding
that can have drastic effects on the
molecular functions and interactions
with other side chains and helices
(Shapiro et al., 2002).
Intracellular Face and G-Protein
Binding Site.
TM6 is also involved in the intracellular,
or cytoplasmic, movements of the
receptor (Figure 6). To make room for
the G-protein the TM6 shifts outward,
which is an example of the “global
toggle-switch method.” In order for the
TM6 movement to occur, the TM5
moves sideward to provide space. This
mechanism may not be universal to
GPCRs since different interprotein
interactions occur through differences in
receptor sequences (Isberg et al., 2011).
9. 9
The intracellular loop i2 may be
involved in specific binding reactions of
hallucinogenic and non-hallucinogenic
drugs (Figure 4). Implications of this
involve different pharmacological
actions of the receptor based on the
specific hallucinogen (Perez-Aguilar et
al., 2014). The global toggle-switch
model is a proposed method for the
different functional mechanisms that
occur with the i2 loop and different
ligands.
CONCLUSION
In summary, 5-HT2A is G-protein
coupled receptor. It is characterized by
seven transmembrane helices (TM1-
TM7) as well as extracellular and
intracellular loops. Each helix and loop
interact with the binding ligand, but
some do more than others. The TM6
helix in particular has many effects that
result in changes of other helices as well.
This includes TM5 and TM3.
Various methods have been used to
attempt construction of the protein’s
structure, but this has proved extremely
difficult. It is a membrane-bound
protein, which are challenging to
crystallize. Modern techniques have
shifted towards molecular dynamics
modeling. These have provided
relatively accurate models based off of
ligand binding tests conducted in the
studies. One challenge remaining is
determining individual interactions of
internal amino acids with the ligand
when binding in the active site. The
knowledge behind this mechanism for
LSD would provide insight as to why a
molecule with relatively similar traits to
serotonin has as high of an affinity as it
does for the 5-HT2A receptor.
ACKKNOWLEDGMENTS
The author thanks Dr. Tonn for her
support and guidance in this research as
well as providing the CHEM403 student
body with the opportunity to conduct
their own choices of research. Additional
thanks are attributed to Pacific Lutheran
University for access to journal articles
and other resources. Finally, it is of
great appreciation to the authors cited in
this review for their dedication and
efforts to furthering the knowledge of
the scientific community and general
population.
10. 10
FIGURES
Figure 1. Structures of various types of agonists on the 5-HT2A receptor. There are
similarities between tryptamines and ergolines, though tryptamines tend to have more
similar binding characteristics as serotonin given similarities of the indole ring structure
and amine groups (Nichols, 2012).
Figure 2.
Structures of lysergic acid diethylamide (LSD). The key characteristic is the indole ring,
which is similar to serotonin’s structure and an important part of the molecule involved
in the binding to the active site (Wikimedia Commons).
11. 11
Figure 3. Represented is the “canonical” sequence of the 5-HT2A receptor, with a length
of 471 amino acids and a molecular mass of 52, 603 g/mol (UniProt).
Figure 4. General structure for a G-protein coupled receptor, where purple circles
indicate conserved amino acids throughout the entire G-protein family. The protein
displayed is mAChR in its M3 isoform. The diagram provides the general structural
characteristics of G-proteins, where there are seven intermembrane helices, an
extracellular amino terminus, and an intracellular carboxy terminus. The second
diagram consisting of parts A, B, and C shows the seven transmembrane domains with
the center as the binding site. These are not the structure for the 5-HT2A receptor, but it
displays a generalized formation of how the ligand binds in the active site. Displayed
here is a catecholamine binding in βAR. This model also demonstrates the stabilizing
hydroxyl groups within the active site (Byrne et al., 2004).
13. 13
Figure 6. Intracellular depiction for the above model of 5-HT2A and β2AR protein
superimposition. (Isberg et al., 2011)
14. 14
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