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Introduction
      The
  Agricultural
   Ontology
   Service -
   project, a
  cooperative
  approach to
    improve
 organization
and retrieval of   It has become a triviality to state the difficulty
 knowledge on
   the web.            of finding relevant information on the web

 Johannes Keizer
    Food and
   Agriculture
 Organization of
    the UN
  Library and
 Documentation
Systems Division


21-03-2002

Slide 1
The Search Problem
      The
  Agricultural
   Ontology
   Service -
   project, a      How to evaluate Search Results?
  cooperative
  approach to
    improve                    Number of Relevant Documents Identified
 organization      Precision
and retrieval of
 knowledge on                  Total Number of Documents Identified
   the web.

                               Number of Relevant Documents Identified
                   Recall
 Johannes Keizer               Number of Relevant Documents in the Collection
    Food and
   Agriculture
 Organization of
    the UN
  Library and
 Documentation
Systems Division


21-03-2002
                   Both parameters are ranking low today!
Slide 2
The Browse Problem
      The
  Agricultural
   Ontology
   Service -
                   •   Topic Trees from categorization schemes and thesauri are
   project, a          rigid and not very expressive
  cooperative
  approach to
    improve
 organization
and retrieval of
 knowledge on
   the web.
                       •   Machine produced clusters are “flexible”, but very
                           imprecise
 Johannes Keizer
    Food and
   Agriculture
 Organization of
    the UN
  Library and
 Documentation
Systems Division


21-03-2002

Slide 3
Ways to Resource Description and Discovery
      The
  Agricultural
   Ontology
   Service -       • Statistical:
   project, a
  cooperative
  approach to      using words as lexical terms, statistical analysis
    improve
 organization        (word counts), most full text search engines work
and retrieval of
 knowledge on        like this
   the web.



                   • Semantical:
                   referring the information resource to a category or to
 Johannes Keizer
    Food and
   Agriculture
 Organization of     thesaurus terms
    the UN
  Library and
 Documentation
Systems Division
                    Statistic methods are unprecise by nature; semantic
21-03-2002           methods depend on the knowledge organization system
Slide 4              used
Knowledge Organization Systems now
      The
  Agricultural
   Ontology         Insufficientand Knowledge +
                       Existing Thesauri subject                  Dedicated KOSs
   Service -           Organization Systems (KOSs)
   project, a      language coverage                            e.g., ASFA thesaurus
  cooperative
                                                             e.g., the Multilingual
  approach to                                         Only very simple encoding
                                                              Forestry Thesaurus
    improve
 organization                                        of semantic the Sustainable
                                                              e.g.,
                                                                    relations
and retrieval of
                                                                   Development
 knowledge on
   the web.
                    Common concepts are                        website classification
                   not declared                            e.g., biological taxonomies such
                                                                   as NCBI and ITIS
                                                      No or very limited
                                                            Other thematic thesauri
 Johannes Keizer
    Food and
                                                     interoperability
   Agriculture
                                                                Non-dedicated KOSs
 Organization of
    the UN          Very limited machine
                                                           CABI Thesaurus
  Library and
 Documentation     readability                             AGROVOC
Systems Division
                                                           NAL Thesaurus
21-03-2002                                            Severe maintenance
                                                         GEMET
Slide 5                                              problems
Consequences
      The
  Agricultural
   Ontology
   Service -       • No common topic trees in one domain, no cross
   project, a
  cooperative
                     navigation between applications in a specific domain
  approach to
    improve
 organization
and retrieval of
                   • Keyword searches are based on statistical textanalysis
 knowledge on
   the web.
                   • Automatic indexing systems show mostly poor results

 Johannes Keizer   • Web crawlers and harvesters do good jobs only on
    Food and
   Agriculture       already structured information sources
 Organization of
    the UN
  Library and
 Documentation
Systems Division
                   • The semantic Web is very far away
21-03-2002

Slide 6
But there is a solution…
      The
  Agricultural
   Ontology
   Service -       • Development of Application and Domain
   project, a
  cooperative
  approach to
                     Ontologies to assure:
    improve
 organization
                    a formal description of the application knowledge
and retrieval of
 knowledge on
                    possibility of machine processing
   the web.


                   • Development of an Agricultural Ontology
 Johannes Keizer     Service to assure:
    Food and
   Agriculture
 Organization of
                    compatibility
    the UN
                    reusability
  Library and
 Documentation
Systems Division
                    sustainability
21-03-2002

Slide 7
Ontologies?
      The
  Agricultural
   Ontology
   Service -        An ontology is a formal knowledge organization
   project, a
  cooperative        system
  approach to
    improve         It contains concepts (and instances)
 organization
and retrieval of    Definitions of concepts and instances
 knowledge on
   the web.         Relations between concepts and instances


                    Nearly everyone tries to build (inexplicit) ontologies
 Johannes Keizer
    Food and
                    Directory structures, navigation trees
   Agriculture
 Organization of    Humans can overcome bad organization by intuition
    the UN
  Library and       Machine have no intuition, Machine need formal information
 Documentation
Systems Division


21-03-2002

Slide 8
A Sample ontology for crop pest management


      The
  Agricultural
   Ontology
   Service -
   project, a
  cooperative
  approach to
    improve
 organization
and retrieval of
 knowledge on
   the web.




 Johannes Keizer
    Food and
   Agriculture
 Organization of
    the UN
  Library and
 Documentation
Systems Division


21-03-2002

Slide 9
Why Ontologies?
      The
  Agricultural
   Ontology        • Semantic Organization of websites
   Service -
   project, a
                    Knowledge maps
  cooperative       Guided discovery of knowledge
  approach to
    improve         Easy retrievability of information without using complicated
 organization        Boolean logic
and retrieval of
 knowledge on      • Text processing by machines
   the web.         Text Mining on the Web (meaning-oriented access)
                    Automatic indexing and text annotation tools
                    Full text search engines that create meaningful classification
                     (FAO-Schwartz not related to FAO) (semantic clustering)
 Johannes Keizer
    Food and       • Intelligent search of the Web
   Agriculture
 Organization of    Building dynamical catalogues from machine readable meta data
    the UN
  Library and
                   • Natural Language processing
 Documentation
Systems Division
                    Better machine translation
                    Queries using natural language
21-03-2002

Slide 10
Guided Browse and Search Facilities
      The
  Agricultural
   Ontology
   Service -
   project, a
  cooperative
  approach to
    improve          Records found: 5
 organization
                    1. xxxxxxxxxxx
and retrieval of
 knowledge on       2. xxxxxxxxxxx
   the web.
                    3. xxxxxxxxxxx
                    4. xxxxxxxxxxx                    What would you like to view?
                    5. xxxxxxxxxxx                           Forest rights issues
 Johannes Keizer
                                                             Parasites of forests
    Food and       You may also be interested in...
   Agriculture                                               Pesticides used in forests
 Organization of
    the UN
                   Biotopes                              x   Types of forest products
                   Cropping systems using forests            Uses of forest products
  Library and
 Documentation     Economics of forest production
Systems Division   Forestry equipment                  You can further limit by:
                   Soil science
                                                      Geographic area     Africa
21-03-2002
                                                      Type of resource Web page
Slide 11
Context Sensitive Knowledge Access
      The
  Agricultural
   Ontology         Use your right mouse button to learn more about an italicized word on the   Agricultural Web Page
   Service -        page.
   project, a                                                                                        Biosecurity:
                   Conservation agriculture
  cooperative                                                                                        management of all
  approach to      Farmers like it because it gives them a means of conserving,
                                                                                                     biological
    improve        improving and making more efficient use of their natural resources
 organization                                                                                        and environmental risks
                   About camels and llamas                                                           associated with food and
and retrieval of
 knowledge on      Descendants of the same rabbit-sized mammal, they have become                     agriculture, including
   the web.        two of humanity's most versatile domestic animals                                 forestry
                   Agribusiness and small farmers                                                    and fisheries
                   Well managed contract farming contributes to both increased
                   income for producers and higher profits for investors                             See also:
                   Toward biosecurity
                                                                                                     Biosafety
 Johannes Keizer
                                                                                                     Food Safety
    Food and       Biological and environmental risks associated with food and
   Agriculture     agriculture have intensified with economic globalization
                                                                                                     Risk Management
 Organization of
    the UN         Urban food marketing                                                              Or are you interested in...:
  Library and      In the “century of cities”, a major challenge will be providing                   Food Security
 Documentation     adequate quantities of nutritional and affordable food for urban
Systems Division                                                                                     Biological Diversity
                   inhabitants

                   Crop science and ethics
21-03-2002
                   In order to continue their contribution to human development, crop
Slide 12           scientists must regain credibility
Why an Agricultural Ontology Service?
      The
  Agricultural
   Ontology
   Service -
                   The production of knowledge organization systems in our subject area
   project, a         can be only
  cooperative
  approach to           International
    improve
 organization              The Internet must become plurilingual
and retrieval of
 knowledge on           Multidisciplinary
   the web.
                           FAOs subjectarea is broad and needs various inputs

                        Cooperative
                           different expert knowledge has to be associated and used)
 Johannes Keizer
    Food and            Distributed
   Agriculture
 Organization of           no central ownership should be looked for
    the UN
  Library and
 Documentation
                        Coordinated
Systems Division           Coordination must ensure reusability and standardization

21-03-2002

Slide 13
AOS: Iterative Knowledge Registration
      The
  Agricultural
   Ontology
   Service -
   project, a
                                                                               Components: terms,
  cooperative
  approach to                  KOS uses                    Partner                definitions,
    improve                components to build                                   relationships
 organization                an application
and retrieval of
 knowledge on
   the web.

                                                                                  Agricultural Ontology
                          Application                                                Service (AOS)
                                                                                       Federated storage and
 Johannes Keizer                                                                        description facility
    Food and
   Agriculture     Users search and browse
 Organization of
                                                                           Components:
    the UN
                      application using                                        terms,
  Library and
                         components                    Partner              definitions,
 Documentation                                                             relationships
Systems Division        User feedback
                                                 Discussions and choices
21-03-2002
                                                   for amendments to
                                                       components
Slide 14
The Start of the AOS Initiative
      The
  Agricultural
   Ontology
   Service -       • The first workshop took place in Rome, November
   project, a
  cooperative        2001
  approach to
    improve        • A launch group was established with participation
 organization
and retrieval of
 knowledge on
                     of
   the web.           – Content providers (FAO, CABI)
                      – Solution providers in the Agricultural Area (ATO -Wageningen,
                        University of Florida)
                      – Ontology development Groups (AIFB Karlsruhe, CNR Italy)
 Johannes Keizer
    Food and
   Agriculture
 Organization of
    the UN         • Now key international partners have to be
  Library and
 Documentation       determined
Systems Division


21-03-2002

Slide 15
AOS Initiative – the development
      The
  Agricultural
   Ontology
   Service -       • The second AOS workshop took place in January
   project, a
  cooperative        in Oxford, prototypes were planned
  approach to
    improve
                      – Fishery Ontology
 organization         – Crop Pest Ontology
and retrieval of
 knowledge on         – Microbial Agents Ontology
   the web.
                   • The third AOS workshop will take place in May in
                     Florida
                      – To discuss the prototypes
 Johannes Keizer
    Food and          – To get keyplayers from the Americas (IICA already confirmed
   Agriculture          participation)
 Organization of
    the UN
  Library and
 Documentation
Systems Division
                   • Are you interested in participation?
21-03-2002

Slide 16
AOS- Intiative - Sustainability
      The
  Agricultural
   Ontology
   Service -        FAO plays a key-role in defining Knowledge
   project, a
  cooperative        Organization Systems since the 70th (AGRIS-
  approach to
    improve          Categories, AGROVOC)
 organization
and retrieval of
 knowledge on
                    But FAO needs committed partners for this project
   the web.            For Subject Coverage,
                       For Language Coverage

                    External funding is necessary for the first years of
 Johannes Keizer
    Food and
                     the project
   Agriculture
 Organization of    The Launch Group is preparing a proposal for the
    the UN
  Library and        6th Framework (EU)
 Documentation
Systems Division
                    Other roads must be explored
21-03-2002

Slide 17
The Evolution of Knowledge Management
      The
  Agricultural     Pre- Web                     Web                          Semantic Web
   Ontology
   Service -
   project, a
                   Books, Magazines,            Books, Magazines, Articles   Defined Electronic
  cooperative
  approach to      Articles, ….                 Databases, Webpages          Information Elements
    improve
 organization      Libraries/Archives/File      Libraries/Archives/File      Electronic
and retrieval of   systems                      Systems/Websites             Repositories
 knowledge on
   the web.        Bibliographic Catalogues     Bibliographic Catalogues     Machine Readable
                   on Cards or Computers        Machine Index Catalogues     Metadata Repositories

                   Human Indexing               Human Indexing               Machine Indexing
                                                Machine Indexing             Human Indexing
 Johannes Keizer
                   Human reading, checking      Statistical Analysis by      Semantical Analysis by
    Food and
   Agriculture     and classifying              Machines                     Machines
 Organization of
    the UN
  Library and      Bibliographies               Bibliographies/Output from   Knowledge based
 Documentation                                  Fulltext Search Engines      specialized webportals
Systems Division
                   Reviews                                                   Knowledge Mining
21-03-2002

Slide 18           Thesauri, Classification Schemes, Glossaries,             Ontologies
Further Information
      The
  Agricultural
   Ontology
   Service -
   project, a
                   http://www.fao.org/agris/AOS
  cooperative
  approach to      http://www.fao.org/agris/AGMES
    improve
 organization
and retrieval of
 knowledge on
   the web.
                   Johannes.Keizer@fao.org

 Johannes Keizer
    Food and
                   Frehiwot.Fisseha@fao.org
   Agriculture
 Organization of
    the UN
  Library and
 Documentation
Systems Division


21-03-2002

Slide 19

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It has become a triviality to state the difficulty of finding relevant information on the web

  • 1. Introduction The Agricultural Ontology Service - project, a cooperative approach to improve organization and retrieval of It has become a triviality to state the difficulty knowledge on the web. of finding relevant information on the web Johannes Keizer Food and Agriculture Organization of the UN Library and Documentation Systems Division 21-03-2002 Slide 1
  • 2. The Search Problem The Agricultural Ontology Service - project, a How to evaluate Search Results? cooperative approach to improve Number of Relevant Documents Identified organization Precision and retrieval of knowledge on Total Number of Documents Identified the web. Number of Relevant Documents Identified Recall Johannes Keizer Number of Relevant Documents in the Collection Food and Agriculture Organization of the UN Library and Documentation Systems Division 21-03-2002 Both parameters are ranking low today! Slide 2
  • 3. The Browse Problem The Agricultural Ontology Service - • Topic Trees from categorization schemes and thesauri are project, a rigid and not very expressive cooperative approach to improve organization and retrieval of knowledge on the web. • Machine produced clusters are “flexible”, but very imprecise Johannes Keizer Food and Agriculture Organization of the UN Library and Documentation Systems Division 21-03-2002 Slide 3
  • 4. Ways to Resource Description and Discovery The Agricultural Ontology Service - • Statistical: project, a cooperative approach to using words as lexical terms, statistical analysis improve organization (word counts), most full text search engines work and retrieval of knowledge on like this the web. • Semantical: referring the information resource to a category or to Johannes Keizer Food and Agriculture Organization of thesaurus terms the UN Library and Documentation Systems Division  Statistic methods are unprecise by nature; semantic 21-03-2002 methods depend on the knowledge organization system Slide 4 used
  • 5. Knowledge Organization Systems now The Agricultural Ontology  Insufficientand Knowledge + Existing Thesauri subject Dedicated KOSs Service - Organization Systems (KOSs) project, a language coverage e.g., ASFA thesaurus cooperative e.g., the Multilingual approach to  Only very simple encoding Forestry Thesaurus improve organization of semantic the Sustainable e.g., relations and retrieval of Development knowledge on the web.  Common concepts are website classification not declared e.g., biological taxonomies such as NCBI and ITIS  No or very limited Other thematic thesauri Johannes Keizer Food and interoperability Agriculture Non-dedicated KOSs Organization of the UN  Very limited machine CABI Thesaurus Library and Documentation readability AGROVOC Systems Division NAL Thesaurus 21-03-2002  Severe maintenance GEMET Slide 5 problems
  • 6. Consequences The Agricultural Ontology Service - • No common topic trees in one domain, no cross project, a cooperative navigation between applications in a specific domain approach to improve organization and retrieval of • Keyword searches are based on statistical textanalysis knowledge on the web. • Automatic indexing systems show mostly poor results Johannes Keizer • Web crawlers and harvesters do good jobs only on Food and Agriculture already structured information sources Organization of the UN Library and Documentation Systems Division • The semantic Web is very far away 21-03-2002 Slide 6
  • 7. But there is a solution… The Agricultural Ontology Service - • Development of Application and Domain project, a cooperative approach to Ontologies to assure: improve organization  a formal description of the application knowledge and retrieval of knowledge on  possibility of machine processing the web. • Development of an Agricultural Ontology Johannes Keizer Service to assure: Food and Agriculture Organization of  compatibility the UN  reusability Library and Documentation Systems Division  sustainability 21-03-2002 Slide 7
  • 8. Ontologies? The Agricultural Ontology Service -  An ontology is a formal knowledge organization project, a cooperative system approach to improve  It contains concepts (and instances) organization and retrieval of  Definitions of concepts and instances knowledge on the web.  Relations between concepts and instances  Nearly everyone tries to build (inexplicit) ontologies Johannes Keizer Food and  Directory structures, navigation trees Agriculture Organization of  Humans can overcome bad organization by intuition the UN Library and  Machine have no intuition, Machine need formal information Documentation Systems Division 21-03-2002 Slide 8
  • 9. A Sample ontology for crop pest management The Agricultural Ontology Service - project, a cooperative approach to improve organization and retrieval of knowledge on the web. Johannes Keizer Food and Agriculture Organization of the UN Library and Documentation Systems Division 21-03-2002 Slide 9
  • 10. Why Ontologies? The Agricultural Ontology • Semantic Organization of websites Service - project, a  Knowledge maps cooperative  Guided discovery of knowledge approach to improve  Easy retrievability of information without using complicated organization Boolean logic and retrieval of knowledge on • Text processing by machines the web.  Text Mining on the Web (meaning-oriented access)  Automatic indexing and text annotation tools  Full text search engines that create meaningful classification (FAO-Schwartz not related to FAO) (semantic clustering) Johannes Keizer Food and • Intelligent search of the Web Agriculture Organization of  Building dynamical catalogues from machine readable meta data the UN Library and • Natural Language processing Documentation Systems Division  Better machine translation  Queries using natural language 21-03-2002 Slide 10
  • 11. Guided Browse and Search Facilities The Agricultural Ontology Service - project, a cooperative approach to improve Records found: 5 organization 1. xxxxxxxxxxx and retrieval of knowledge on 2. xxxxxxxxxxx the web. 3. xxxxxxxxxxx 4. xxxxxxxxxxx What would you like to view? 5. xxxxxxxxxxx Forest rights issues Johannes Keizer Parasites of forests Food and You may also be interested in... Agriculture Pesticides used in forests Organization of the UN Biotopes x Types of forest products Cropping systems using forests Uses of forest products Library and Documentation Economics of forest production Systems Division Forestry equipment You can further limit by: Soil science Geographic area Africa 21-03-2002 Type of resource Web page Slide 11
  • 12. Context Sensitive Knowledge Access The Agricultural Ontology Use your right mouse button to learn more about an italicized word on the Agricultural Web Page Service - page. project, a Biosecurity: Conservation agriculture cooperative management of all approach to Farmers like it because it gives them a means of conserving, biological improve improving and making more efficient use of their natural resources organization and environmental risks About camels and llamas associated with food and and retrieval of knowledge on Descendants of the same rabbit-sized mammal, they have become agriculture, including the web. two of humanity's most versatile domestic animals forestry Agribusiness and small farmers and fisheries Well managed contract farming contributes to both increased income for producers and higher profits for investors See also: Toward biosecurity Biosafety Johannes Keizer Food Safety Food and Biological and environmental risks associated with food and Agriculture agriculture have intensified with economic globalization Risk Management Organization of the UN Urban food marketing Or are you interested in...: Library and In the “century of cities”, a major challenge will be providing Food Security Documentation adequate quantities of nutritional and affordable food for urban Systems Division Biological Diversity inhabitants Crop science and ethics 21-03-2002 In order to continue their contribution to human development, crop Slide 12 scientists must regain credibility
  • 13. Why an Agricultural Ontology Service? The Agricultural Ontology Service - The production of knowledge organization systems in our subject area project, a can be only cooperative approach to  International improve organization The Internet must become plurilingual and retrieval of knowledge on  Multidisciplinary the web. FAOs subjectarea is broad and needs various inputs  Cooperative different expert knowledge has to be associated and used) Johannes Keizer Food and  Distributed Agriculture Organization of no central ownership should be looked for the UN Library and Documentation  Coordinated Systems Division Coordination must ensure reusability and standardization 21-03-2002 Slide 13
  • 14. AOS: Iterative Knowledge Registration The Agricultural Ontology Service - project, a Components: terms, cooperative approach to KOS uses Partner definitions, improve components to build relationships organization an application and retrieval of knowledge on the web. Agricultural Ontology Application Service (AOS) Federated storage and Johannes Keizer description facility Food and Agriculture Users search and browse Organization of Components: the UN application using terms, Library and components Partner definitions, Documentation relationships Systems Division User feedback Discussions and choices 21-03-2002 for amendments to components Slide 14
  • 15. The Start of the AOS Initiative The Agricultural Ontology Service - • The first workshop took place in Rome, November project, a cooperative 2001 approach to improve • A launch group was established with participation organization and retrieval of knowledge on of the web. – Content providers (FAO, CABI) – Solution providers in the Agricultural Area (ATO -Wageningen, University of Florida) – Ontology development Groups (AIFB Karlsruhe, CNR Italy) Johannes Keizer Food and Agriculture Organization of the UN • Now key international partners have to be Library and Documentation determined Systems Division 21-03-2002 Slide 15
  • 16. AOS Initiative – the development The Agricultural Ontology Service - • The second AOS workshop took place in January project, a cooperative in Oxford, prototypes were planned approach to improve – Fishery Ontology organization – Crop Pest Ontology and retrieval of knowledge on – Microbial Agents Ontology the web. • The third AOS workshop will take place in May in Florida – To discuss the prototypes Johannes Keizer Food and – To get keyplayers from the Americas (IICA already confirmed Agriculture participation) Organization of the UN Library and Documentation Systems Division • Are you interested in participation? 21-03-2002 Slide 16
  • 17. AOS- Intiative - Sustainability The Agricultural Ontology Service -  FAO plays a key-role in defining Knowledge project, a cooperative Organization Systems since the 70th (AGRIS- approach to improve Categories, AGROVOC) organization and retrieval of knowledge on  But FAO needs committed partners for this project the web.  For Subject Coverage,  For Language Coverage  External funding is necessary for the first years of Johannes Keizer Food and the project Agriculture Organization of  The Launch Group is preparing a proposal for the the UN Library and 6th Framework (EU) Documentation Systems Division  Other roads must be explored 21-03-2002 Slide 17
  • 18. The Evolution of Knowledge Management The Agricultural Pre- Web Web Semantic Web Ontology Service - project, a Books, Magazines, Books, Magazines, Articles Defined Electronic cooperative approach to Articles, …. Databases, Webpages Information Elements improve organization Libraries/Archives/File Libraries/Archives/File Electronic and retrieval of systems Systems/Websites Repositories knowledge on the web. Bibliographic Catalogues Bibliographic Catalogues Machine Readable on Cards or Computers Machine Index Catalogues Metadata Repositories Human Indexing Human Indexing Machine Indexing Machine Indexing Human Indexing Johannes Keizer Human reading, checking Statistical Analysis by Semantical Analysis by Food and Agriculture and classifying Machines Machines Organization of the UN Library and Bibliographies Bibliographies/Output from Knowledge based Documentation Fulltext Search Engines specialized webportals Systems Division Reviews Knowledge Mining 21-03-2002 Slide 18 Thesauri, Classification Schemes, Glossaries, Ontologies
  • 19. Further Information The Agricultural Ontology Service - project, a http://www.fao.org/agris/AOS cooperative approach to http://www.fao.org/agris/AGMES improve organization and retrieval of knowledge on the web. Johannes.Keizer@fao.org Johannes Keizer Food and Frehiwot.Fisseha@fao.org Agriculture Organization of the UN Library and Documentation Systems Division 21-03-2002 Slide 19