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Semantic Hybridized Image
Features in Visual
Diagnostic of Plant Health
Sieow Yeek Tan, Dickson Lukose
Image Understanding
Artificial Intelligence Lab / MIMOS Berhad
Background of paper
 •   A picture is worth more than a thousand words
 •   Objective is to use image to tell the Plant State
 •   Plant State growing process
 •   Plant nutrient deficiency type and level




                                         Leaf spot


Lack of phosphorus
                                                     Lack of nitrogen
                     Lack of potassium


                                                                        2
Agenda
•   Image Understanding – Introduction

•   Research Motivation
     –   Current Technology
     –   Future Technology
     –   Research Gap

•   Visual Feature Descriptors
     –   CEDD: Color and Edge Directivity Descriptor
     –   FCTH: Fuzzy Color and Texture Histrogram

•   Plant Health State Conceptualization
     –   Supervised Learning of Plant Health State
     –   Construction of Plant Health State Ontology

•   Plant Health Visual Diagnostic Model
     –   Feature Similarity Calculation

•   Visual Plant Diagnostic Laboratory System

•   Experiment & Results
     –   Experiment & Training dataset
     –   Experiment Results


                                                       3
Image Understanding - Introduction




                                     4
Research Motivation – Current Technology




   User Request:          Return
   Get me similar image
   of this




                                       5
Research Motivation – Future Technology



                     Computer Improved Capability :
                         •Detected building KLCC!!!

                     •Inference result:
                           •Located in Kuala Lumpur.
                           •KL located in Malaysia.
                           •KLCC hasHeight 532meter
                           •KLCC hasGeoLocation xxx




                                                       6
Research Motivation – Research Gap
Color :      Shape :      Texture :
•Red         •Circle      •...
•Green       •Square
                                       Image Feature
•Black       •Rectangle               Conceptualization
•Brown       •...
•...




          KLCC                             Object
                                      Conceptualization




 Knowledge from the
     INTERNET



                                                          7
Visual Feature Descriptors
• General visual descriptors:
  • An international standard of descriptions to represent a
    visual content
  • Encode visual content in a form of vector
  • Goal: To search, identify, filter and browse visual content
  • Visual content can be color, texture, shape
                                          Three color images and
                                          their MPEG-7 histogram
                                          color distribution, depicted
                                          using a simplified color
                                          histogram

                                          Based on the color
                                          distribution, the two left
                                          images would be recognized
                                          as more similar compared to
                                          the one on the right.
                                                                         8
Visual Feature Descriptors (Cont.)
    2 Visual descriptors are used in this paper

                        CEDD                                                  FCTH
                Encode                                               Encode

                       Color                                                   Texture
                 Direction of edge


Savvas A. C., Yiannis S. B., CEDD: color and edge directivity descriptor: a compact descriptor for image indexing and
retrieval, Proceedings of the 6th international conference on Computer vision systems, Santorini, Greece (2008)

Savvas A. C., Yiannis S. B., FCTH: Fuzzy Color and Texture Histogram - A Low Level Feature for Accurate Image Retrieval,
Proceedings of the Ninth International Workshop on Image Analysis for Multimedia Interactive Services, 191-196
(2008)                                                                                                                     9
Plant Health State Conceptualization:
Supervised Learning of Plant Health State




                                            10
Plant Health State Conceptualization:
       Construction of Plant Health State Ontology




 𝐀𝐆𝐑𝐎𝐕𝐎𝐂
The world’s largest agriculture thesaurus. It has been built over the last 10 years by
the Office of Knowledge Exchange, Research and Extension at the Food and
Agriculture Organization of the United Nation (FAO)

ALOD (2011). AGROVOC Linked Open Data, Food and Agriculture Organization of the United Nations (FAO), Rome,
Italy. URL: http://aims.fao.org/website/Linked-Open-Data/sub (last visited April 2011)
                                                                                                              11
Plant Health State Conceptualization:
Construction of Plant Health State Ontology (Cont.)




                                                      12
Plant Health State Conceptualization:
Construction of Plant Health State Ontology (Cont.)




                                                      13
Plant Health State Conceptualization




                                       14
Multiple sub-Windows for Image Blocks




                                        15
Features Similarity Calculation & Measurement
                                                  Visual descriptors
Each of the image blocks to
                                                   CEDD and FCTH
extract the CEDD and FCTH
                                           extracted from training Images
     visual descriptors




                              Similarity
                              Matching




                                                                            16
Plant Health State Conceptualization
- Feature Similarity Calculation
    Based on
                                                                         𝑐         (𝑐)
COSINE SIMILARITY                                         𝑖,𝑗
                                                                  (𝑓𝑡,𝑖 . 𝑓𝑒,𝑗 )
  fundamental                                           S𝑐 =       (𝑐)               (𝑐)
                                                                ||𝑓𝑡,𝑖 | × | 𝑓𝑒,𝑗 ||
                  𝑓     𝑐
                𝑓𝑡,𝑖 , 𝑓𝑡,𝑖 : Feature vector                                 𝑓      (𝑓)
                                                          𝑖,𝑗
                                                                  (𝑓𝑡,𝑖          . 𝑓𝑒,𝑗 )
             extracted from training images             S𝑓 =        (𝑓)               (𝑓)
                                                                ||𝑓𝑡,𝑖 | × | 𝑓𝑒,𝑗 ||
 (𝑓)   (𝑐)
𝑓𝑒,𝑗 , 𝑓𝑒,𝑗 : Feature vector extracted
      from target image blocks

                               𝑖,𝑗   𝑖,𝑗
                             S 𝑐 , S 𝑓 : Ranged from 0 to 1



             Threshold configuration for analysis

                                                                                            17
Visual Plant Diagnostic Laboratory System
Multiple sub-Windows                                           Detected
  for Image Blocks                                         Plant Health State




          System Operational Panel. For exporting      Visual Feature Descriptors
        experiment results and perform configuration        analysis details
                                                                                18
Experiment & Training dataset
 Unhealthy                    Sample of training images                  5 𝑡𝑦𝑝𝑒𝑠 𝑜𝑓
Plant States   “Cropped” category               “Original” category     𝑢𝑛ℎ𝑒𝑎𝑙𝑡ℎ 𝑝𝑙𝑎𝑛𝑡
  Iris leaf
    spot                                                                50 𝑖𝑚𝑎𝑔𝑒𝑠 𝑜𝑓
                                                                      𝑒𝑥𝑝𝑒𝑟𝑖𝑚𝑒𝑛𝑡 𝑑𝑎𝑡𝑎𝑠𝑒𝑡
  Nitrogen                                                             𝑓𝑜𝑟 𝑒𝑎𝑐ℎ 𝑡𝑦𝑝𝑒 𝑜𝑓
 deficiency                                                               𝑝𝑙𝑎𝑛𝑡 𝑠𝑡𝑎𝑡𝑒

  Oedema                                                                 30 𝑖𝑚𝑎𝑔𝑒𝑠
                                                                       𝑡𝑟𝑎𝑖𝑛𝑖𝑛𝑔 𝑑𝑎𝑡𝑎𝑠𝑒𝑡
Phosphorous                                                               “Cropped”
 deficiency
                                                                             and
                                                                          “Original”
 Potassium
 deficiency                                                            1 𝑠𝑒𝑡 𝑜𝑓 ℎ𝑒𝑎𝑙𝑡ℎ𝑦
                                                                          𝑝𝑙𝑎𝑛𝑡 𝑠𝑡𝑎𝑡𝑒

                                                                                          19
Experiment Results




        Result showing the          “Cropped” category
   potentiality and feasibility        Seem to show
 of using the proposed model in      better result than
performing visual plant diagnosis   “Original” category

                                                          20
21

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Semantic Hybridized Image Features in Visual Diagnostic of Plant Health

  • 1. Semantic Hybridized Image Features in Visual Diagnostic of Plant Health Sieow Yeek Tan, Dickson Lukose Image Understanding Artificial Intelligence Lab / MIMOS Berhad
  • 2. Background of paper • A picture is worth more than a thousand words • Objective is to use image to tell the Plant State • Plant State growing process • Plant nutrient deficiency type and level Leaf spot Lack of phosphorus Lack of nitrogen Lack of potassium 2
  • 3. Agenda • Image Understanding – Introduction • Research Motivation – Current Technology – Future Technology – Research Gap • Visual Feature Descriptors – CEDD: Color and Edge Directivity Descriptor – FCTH: Fuzzy Color and Texture Histrogram • Plant Health State Conceptualization – Supervised Learning of Plant Health State – Construction of Plant Health State Ontology • Plant Health Visual Diagnostic Model – Feature Similarity Calculation • Visual Plant Diagnostic Laboratory System • Experiment & Results – Experiment & Training dataset – Experiment Results 3
  • 4. Image Understanding - Introduction 4
  • 5. Research Motivation – Current Technology User Request: Return Get me similar image of this 5
  • 6. Research Motivation – Future Technology Computer Improved Capability : •Detected building KLCC!!! •Inference result: •Located in Kuala Lumpur. •KL located in Malaysia. •KLCC hasHeight 532meter •KLCC hasGeoLocation xxx 6
  • 7. Research Motivation – Research Gap Color : Shape : Texture : •Red •Circle •... •Green •Square Image Feature •Black •Rectangle Conceptualization •Brown •... •... KLCC Object Conceptualization Knowledge from the INTERNET 7
  • 8. Visual Feature Descriptors • General visual descriptors: • An international standard of descriptions to represent a visual content • Encode visual content in a form of vector • Goal: To search, identify, filter and browse visual content • Visual content can be color, texture, shape Three color images and their MPEG-7 histogram color distribution, depicted using a simplified color histogram Based on the color distribution, the two left images would be recognized as more similar compared to the one on the right. 8
  • 9. Visual Feature Descriptors (Cont.) 2 Visual descriptors are used in this paper CEDD FCTH Encode Encode Color Texture Direction of edge Savvas A. C., Yiannis S. B., CEDD: color and edge directivity descriptor: a compact descriptor for image indexing and retrieval, Proceedings of the 6th international conference on Computer vision systems, Santorini, Greece (2008) Savvas A. C., Yiannis S. B., FCTH: Fuzzy Color and Texture Histogram - A Low Level Feature for Accurate Image Retrieval, Proceedings of the Ninth International Workshop on Image Analysis for Multimedia Interactive Services, 191-196 (2008) 9
  • 10. Plant Health State Conceptualization: Supervised Learning of Plant Health State 10
  • 11. Plant Health State Conceptualization: Construction of Plant Health State Ontology 𝐀𝐆𝐑𝐎𝐕𝐎𝐂 The world’s largest agriculture thesaurus. It has been built over the last 10 years by the Office of Knowledge Exchange, Research and Extension at the Food and Agriculture Organization of the United Nation (FAO) ALOD (2011). AGROVOC Linked Open Data, Food and Agriculture Organization of the United Nations (FAO), Rome, Italy. URL: http://aims.fao.org/website/Linked-Open-Data/sub (last visited April 2011) 11
  • 12. Plant Health State Conceptualization: Construction of Plant Health State Ontology (Cont.) 12
  • 13. Plant Health State Conceptualization: Construction of Plant Health State Ontology (Cont.) 13
  • 14. Plant Health State Conceptualization 14
  • 15. Multiple sub-Windows for Image Blocks 15
  • 16. Features Similarity Calculation & Measurement Visual descriptors Each of the image blocks to CEDD and FCTH extract the CEDD and FCTH extracted from training Images visual descriptors Similarity Matching 16
  • 17. Plant Health State Conceptualization - Feature Similarity Calculation Based on 𝑐 (𝑐) COSINE SIMILARITY 𝑖,𝑗 (𝑓𝑡,𝑖 . 𝑓𝑒,𝑗 ) fundamental S𝑐 = (𝑐) (𝑐) ||𝑓𝑡,𝑖 | × | 𝑓𝑒,𝑗 || 𝑓 𝑐 𝑓𝑡,𝑖 , 𝑓𝑡,𝑖 : Feature vector 𝑓 (𝑓) 𝑖,𝑗 (𝑓𝑡,𝑖 . 𝑓𝑒,𝑗 ) extracted from training images S𝑓 = (𝑓) (𝑓) ||𝑓𝑡,𝑖 | × | 𝑓𝑒,𝑗 || (𝑓) (𝑐) 𝑓𝑒,𝑗 , 𝑓𝑒,𝑗 : Feature vector extracted from target image blocks 𝑖,𝑗 𝑖,𝑗 S 𝑐 , S 𝑓 : Ranged from 0 to 1 Threshold configuration for analysis 17
  • 18. Visual Plant Diagnostic Laboratory System Multiple sub-Windows Detected for Image Blocks Plant Health State System Operational Panel. For exporting Visual Feature Descriptors experiment results and perform configuration analysis details 18
  • 19. Experiment & Training dataset Unhealthy Sample of training images 5 𝑡𝑦𝑝𝑒𝑠 𝑜𝑓 Plant States “Cropped” category “Original” category 𝑢𝑛ℎ𝑒𝑎𝑙𝑡ℎ 𝑝𝑙𝑎𝑛𝑡 Iris leaf spot 50 𝑖𝑚𝑎𝑔𝑒𝑠 𝑜𝑓 𝑒𝑥𝑝𝑒𝑟𝑖𝑚𝑒𝑛𝑡 𝑑𝑎𝑡𝑎𝑠𝑒𝑡 Nitrogen 𝑓𝑜𝑟 𝑒𝑎𝑐ℎ 𝑡𝑦𝑝𝑒 𝑜𝑓 deficiency 𝑝𝑙𝑎𝑛𝑡 𝑠𝑡𝑎𝑡𝑒 Oedema 30 𝑖𝑚𝑎𝑔𝑒𝑠 𝑡𝑟𝑎𝑖𝑛𝑖𝑛𝑔 𝑑𝑎𝑡𝑎𝑠𝑒𝑡 Phosphorous “Cropped” deficiency and “Original” Potassium deficiency 1 𝑠𝑒𝑡 𝑜𝑓 ℎ𝑒𝑎𝑙𝑡ℎ𝑦 𝑝𝑙𝑎𝑛𝑡 𝑠𝑡𝑎𝑡𝑒 19
  • 20. Experiment Results Result showing the “Cropped” category potentiality and feasibility Seem to show of using the proposed model in better result than performing visual plant diagnosis “Original” category 20
  • 21. 21