This document describes experiments testing several known anti-cancer compounds in three assays: cytotoxicity in 2D cell culture, cytotoxicity in 3D spheroid culture, and a scratch (wound healing) assay. The assays were automated in a 96-well plate format. Results showed that cytotoxicity EC50 values were higher in 3D culture compared to 2D, due to the time needed for compounds to reach the spheroid center. The scratch assay could distinguish between compounds that cause cell cycle arrest and cell death. Automating the 3D cytotoxicity and scratch assays in a high-throughput format allows efficient testing of compounds for poly-effective anti-cancer activity.