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Epigenetics
• ‘Epi’genetics - ‘On’ or ‘over’ the genetic
  information encoded in the DNA
Epigenetics
• The study of reversible heritable changes
  in gene function that occur without a
  change in the sequence of nuclear DNA

• Gene-regulatory information that is not
  expressed in DNA sequences is
  transmitted from one generation (of cells
  or organisms) to the next
Epigenetics and
          Different Aspects of Life
• Development of multicellular organism
• Environment-organism interaction
  For examples: Nutrition supplements and environmental toxins




                     Image: Randy Jirtle

• Pathogenesis of diseases
Molecular Mechanisms that
  Mediate Epigenetic Phenomena

• DNA methylation (CpG dinucleotides)
• Histone modifications




                                 Nucleosome
Histone Modifications




Adapted from Lund and Lohuizen Genes Dev 2004
Epigenetic Regulation of Gene Expression

• Epigenetic information modulates gene
  expression without modifying actual DNA
  sequence
• Histone modifications change the
  chromatin structure and affect the
  accessibility of DNA to regulatory proteins
Epigenetic Regulation of Gene Expression




  Methylated
  DNA


 Histone
Histone Modification Status Correlates with
         Transcriptional Activity




• Gene activation correlated with H3-K9 acetylation
• Gene silencing associated with H3-K9 methylation
Epigenetic Inheritance
• Transmission of non-DNA sequence information
  through either meiosis or mitosis
• When a methylated DNA sequence replicates,
  only one strand of the next-generation double
  helix has all its methyl markers intact; the other
  strand needs to be remethylated
• Maintenance methylase theory
  – DNA methyltransferases (DNMTs): Enzymes that bind
    methyl groups to cytosine nucleotides
  – DNMTs bind methyl groups to the naked cytosines
    based on the methylation template provided by the
    other strand-
Epigenetics and Cancer
• Chromosomal infrastructure is essential for gene control,
  determining both active and repressed states
• It is important not only to turn the right genes on but also
  to turn the right genes off
• Histones and chromatin components have key roles in
  this decision making process
• If as few as three inappropriate genes are turned off, a
  normal cell can be converted into a cancer cell
• This epigenetic silencing of genes underlies a new
  approach to cancer therapy
• Mistargeting of these enzymes leads to tumorigenesis,
  but inhibition of their activity presents a novel approach
  to therapy

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Epigenetics

  • 1. Epigenetics • ‘Epi’genetics - ‘On’ or ‘over’ the genetic information encoded in the DNA
  • 2. Epigenetics • The study of reversible heritable changes in gene function that occur without a change in the sequence of nuclear DNA • Gene-regulatory information that is not expressed in DNA sequences is transmitted from one generation (of cells or organisms) to the next
  • 3. Epigenetics and Different Aspects of Life • Development of multicellular organism • Environment-organism interaction For examples: Nutrition supplements and environmental toxins Image: Randy Jirtle • Pathogenesis of diseases
  • 4. Molecular Mechanisms that Mediate Epigenetic Phenomena • DNA methylation (CpG dinucleotides) • Histone modifications Nucleosome
  • 5. Histone Modifications Adapted from Lund and Lohuizen Genes Dev 2004
  • 6. Epigenetic Regulation of Gene Expression • Epigenetic information modulates gene expression without modifying actual DNA sequence • Histone modifications change the chromatin structure and affect the accessibility of DNA to regulatory proteins
  • 7. Epigenetic Regulation of Gene Expression Methylated DNA Histone
  • 8. Histone Modification Status Correlates with Transcriptional Activity • Gene activation correlated with H3-K9 acetylation • Gene silencing associated with H3-K9 methylation
  • 9. Epigenetic Inheritance • Transmission of non-DNA sequence information through either meiosis or mitosis • When a methylated DNA sequence replicates, only one strand of the next-generation double helix has all its methyl markers intact; the other strand needs to be remethylated • Maintenance methylase theory – DNA methyltransferases (DNMTs): Enzymes that bind methyl groups to cytosine nucleotides – DNMTs bind methyl groups to the naked cytosines based on the methylation template provided by the other strand-
  • 10. Epigenetics and Cancer • Chromosomal infrastructure is essential for gene control, determining both active and repressed states • It is important not only to turn the right genes on but also to turn the right genes off • Histones and chromatin components have key roles in this decision making process • If as few as three inappropriate genes are turned off, a normal cell can be converted into a cancer cell • This epigenetic silencing of genes underlies a new approach to cancer therapy • Mistargeting of these enzymes leads to tumorigenesis, but inhibition of their activity presents a novel approach to therapy