ELIXIR Proteomics Community - Connection with nf-core
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ELIXIR Proteomics Community and the Nextflow nf-core community - a meeting to discuss the joint efforton the standardization of analytical workflows. Find out more at https://nf-co.re/
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OpenNTF is a global open source community for Domino developers. It enables collaboration between developers to increase the number and quality of XPages, controls, and code snippets. OpenNTF has over 250 contributors, 68,000 users, and its projects receive 17,000 downloads per month. Developers can participate by contributing code, providing feedback, helping the technical committee, using OpenNTF code, or becoming a member. OpenNTF also hosts coding contests for developers.
Upperside WebRTC conference - WebRTC intro
This document provides an overview and update on WebRTC standards from December 2014. It discusses what WebRTC is, including that it is a browser-embedded media engine. It describes the various WebRTC standards covering signaling, media codecs and protocols. There is no single defined signaling method for WebRTC. The document also discusses topics like the video codec battle between H.264 and VP8, browser support for WebRTC, and interworking WebRTC with legacy VoIP/IMS deployments.
Opnfv white paper_final
OPNFV is a new open source project that will provide an open platform for deploying NFV solutions. It aims to enable industry collaboration and ensure consistency, performance, and interoperability among virtualized network infrastructures. Initially, OPNFV will focus on providing the NFV Infrastructure, Virtualized Infrastructure Management, and APIs to other NFV elements to form the basic infrastructure for Virtualized Network Functions and orchestration. It will work with upstream open source projects and standards bodies to help realize NFV requirements and drive consistent implementation of an open NFV reference platform.
Opnfv whitepaper 103014
This document introduces OPNFV, an open source project that aims to provide an open platform for deploying NFV solutions. OPNFV will enable industry collaboration to advance NFV and ensure consistency, performance, and interoperability among virtualized network infrastructures. It will work closely with standards bodies to implement a common NFV reference platform. The initial scope is to provide the NFV infrastructure, virtualized infrastructure management, and APIs required for virtualized network functions and management.
Telerik Reporting– Quick Start (Part 2)
This document discusses Telerik Reporting and provides an overview of its key features and implementation process. It outlines the report lifecycle including data sources, report rendering, and output formats. It recommends structuring solutions by creating a class library for report logic and data, then creating web or windows applications that reference the library. The implementation process involves using the report wizard to create a report, adding the library as a reference to a web project, and building a page for report viewing, searching, and export.
Code camp 2015 visual programming mm
The document provides an overview of visual programming environments for science and business, using KNIME and Pipeline Pilot as examples. It defines visual programming as dragging functional components onto a canvas to create a program by configuring components and connecting them to route data. The document demonstrates creating a report of compounds registered in January using these environments and discusses the types of components, applications, and benefits of server deployment that they enable.
What is OPNFV? An Introduction
OPNFV is an open source project that aims to develop an integrated and tested open source platform for network functions virtualization (NFV) to help operators meet increasing demands on networks. The project was launched in September 2014 and is supported by telecom operators and vendors. It will integrate existing open source NFV components and develop new code to provide a carrier-grade reference platform for NFV that supports performance, scale, and reliability requirements of networks.
Cw13 the rising stack-how & why open stack is changing it by mark collier-ope...
OpenStack is an open source cloud computing platform that allows users to provision resources like compute, storage, and networking on demand. It has grown significantly since starting in 2010, with over 800 developers from 50 companies contributing code. The OpenStack community and ecosystem have also grown rapidly, with over 8,000 individual members from around the world. Many large companies are now using OpenStack to power their internal and external cloud services due to its flexibility, scalability and ability to reduce costs.
Cw13 the rising stack-how & why open stack is changing it by mark collier-ope...
OpenStack is an open source cloud computing platform that manages large pools of compute, storage, and networking resources. It is developed through an open development process with over 800 developers from 50 companies contributing code. The OpenStack community has grown rapidly, with over 8,000 members from around the world. Many large companies are using OpenStack to power their cloud computing needs, attracted by its open governance model and rapid pace of innovation.
CW13 The Rising Stack- How & Why OpenStack is changing IT by Mark Collier
The Inevitable Cloud Conference (CLOUD WEEKEND) is the biggest Cloud Computing event in Egypt that is held annually since 2012.
For more information:
Facebook: https://www.facebook.com/TheInevitableCloud
Linkedin: http://www.linkedin.com/company/2990722?goback=%2Efps_PBCK_inevitable+cloud_*1_*1_*1_*1_*1_*1_*2_*1_Y_*1_*1_*1_false_1_R_*1_*51_*1_*51_true_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2_*2&trk=prof-exp-company-name
Contact us:
info@inevitablecloud.org
Open Source Networking Overview
This document provides an overview of open source networking initiatives and projects. It discusses the growth of open source development led by the Linux Foundation and how open source networking allows for greater innovation, transparency, and lower costs for enterprises, carriers, and cloud providers. Example open source projects are described, including OpenDaylight for SDN controllers, ONAP for network automation, and OPNFV for NFV reference platforms. These projects involve components, platforms, and integrated reference platforms to advance software-defined networking and network functions virtualization through open collaboration.
ION Hangzhou - About IETF
The document provides an overview of the Internet Engineering Task Force (IETF) and its role in developing open standards for the internet. It discusses the IETF's mission to produce technical documents that improve how people design, use, and manage the internet. It describes the IETF organization and processes, including its working groups, standards tracks, and publication of RFCs. It also discusses topics of interest being addressed by various IETF working groups such as encryption, signaling of DDoS attacks (DOTS), and private DNS exchanges (DPRIVE).
Inria Tech Talk : RIOT, l'OS libre pour vos objets connectés #IoT
Faites communiquer vos objets connectés avec la solution RIOT !
RIOT est un nano système d'exploitation open source, l’équivalent de Linux, pour l’internet des objets. Grâce aux standards de communication qu'il implémente, il vous permettra de développer facilement et de façon pérenne et sécurisée vos applications pour vos objets communicants et embarqués (agriculture connectée, suivi et gestion de bâtiments intelligents, petits automatismes, usine du futur ...).
Inria, l'institut national de recherche dédié au numérique, qui à French Tech Central connecte les entrepreneurs au meilleur de la recherche publique française, est un des membres co-fondateurs de la communauté mondiale des développeurs RIOT.
Cetis UKOER phase 2 Support
This document discusses technical requirements and support for the UKOER program. It outlines descriptive metadata fields that should be included, recommended file formats, and requirements for depositing content in repositories like JorumOpen. Projects should use RSS to share metadata and consider tracking content usage. CETIS will provide blogs, documentation, events and publications to support UKOER and help synthesize lessons across projects.
7th SDN Expert Group Seminar - Session1
This document provides an overview and updates on SDN technologies including OpenFlow and ONF. The key points discussed include:
1) A survey that found the leading SDN deployments use OpenFlow controller-based approaches, with overlay-based SDN and multiple protocol controllers also common.
2) Updates on ONF activities including comments on OpFlex, collaboration with ETSI on NFV support, and upcoming OpenFlow specifications and extensions.
3) Use cases for SDN/NFV including service chaining, load balancing, and enhancing disaster response for a telecom network. Areas of focus for evolving OpenFlow standards are also outlined.
RIPE Atlas Monitoring Tutorial
This document summarizes a presentation about using RIPE Atlas, a global network measurement platform. It discusses creating measurements using the web interface or API to monitor networks and troubleshoot issues. Integration with monitoring systems like Nagios is covered, along with real-time streaming of measurement results. New features like LatencyMON for long-term monitoring and a CLI toolset for accessing RIPE Atlas from the terminal are also summarized. Hands-on exercises are included to have attendees create measurements and set up status checks.
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nf-core: A community-driven collection of omics portable pipelines
nf-core: A community-driven collection of omics portable pipelines
Reproducible bioinformatics for everyone: Nextflow & nf-core
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Cw13 the rising stack-how & why open stack is changing it by mark collier-ope...
Cw13 the rising stack-how & why open stack is changing it by mark collier-ope...
Cw13 the rising stack-how & why open stack is changing it by mark collier-ope...
Cw13 the rising stack-how & why open stack is changing it by mark collier-ope...
CW13 The Rising Stack- How & Why OpenStack is changing IT by Mark Collier
CW13 The Rising Stack- How & Why OpenStack is changing IT by Mark Collier
Inria Tech Talk : RIOT, l'OS libre pour vos objets connectés #IoT
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More from Phil Ewels
Coffee 'n code: Regexes
SciLifeLab Coffee & Code, Sept 25th 2020.
An introduction to regular expressions at the SciLifeLab / NGI Sweden "Coffee 'n code" talk. Aimed at people who sort-of-know what regexes are, but find them a bit terrifying..
Watch the talk on YouTube: https://youtu.be/2Yp6kvdUMxM
EpiChrom 2019 - Updates in Epigenomics at the NGI
Slides from my talk at the SciLifeLab EpiChrom 2019 meeting: https://www.scilifelab.se/epichrom-2019/
# New epigenomics services at the National Genomics Infrastructure
A quick walkthrough of new library preparation methods on offer to study epigenetic signals at the National Genomics Infrastructure.
The future of genomics in the cloud
Slides from my talk given at the AWS Loft event in Stockholm, November 2018.
When genomic data is staged for analysis on Amazon S3, researchers have fast access to large volumes of data without needing to download and store their own copies. In this session, you will learn how a researcher at Sweden's SciLifeLab has made reference genome data available in the cloud as an AWS Public Dataset, and how this makes it easier for researchers to do large scale genomic analysis using tools like EMR and AWS Batch.
SciLifeLab NGI NovaSeq seminar
Talk from the SciLifeLab NGI NovaSeq seminar in September 2018. I describe how differences in illumina sequencing on the new NovaSeq 6000 can affect your sequencing, with illustrated examples from qcfail.com
Lecture: NGS at the National Genomics Infrastructure
Slides from my session on the SciLifeLab NBIS course "Introduction to Bioinformatics Using NGS Data". Held in Linköping, May 23 2018.
For more information about the course, see https://scilifelab.github.io/courses/ngsintro/1805/
SBW 2016: MultiQC Workshop
This document discusses NGS quality control using MultiQC. It provides background on the large volume of sequencing data processed in 2016 at NGI Stockholm, including different sequencing types and the challenges of manual quality control. It then introduces MultiQC as a tool that parses key metrics from analysis results/logs to create a single HTML report summarizing a project. It provides information on how MultiQC works, how to install and run it, and exercises for users. It also discusses customizing MultiQC reports and developing new modules.
Whole Genome Sequencing - Data Processing and QC at SciLifeLab NGI
Slides presented at the "Rare Disease Genomics" course held at the Centre for Molecular Medicine (Karolinska Institute, Stockholm, Sweden). Phil Ewels, 4th December 2017.
NBIS ChIP-seq course
Slides from my talk as part of the NBIS ChIP-seq tutorial course. I describe how we process ChIP-seq data at the Swedish National Genomics Infrastructure and how our NGI-ChIPseq analysis pipeline works. https://github.com/SciLifeLab/NGI-ChIPseq
Developing Reliable QC at the Swedish National Genomics Infrastructure
Good quality control procedures are essential for sequencing facilities. The SciLifeLab National Genomics Infrastructure is an accredited facility that processes thousands of samples every month, driving us to develop high-throughput QC procedures. We use a LIMS, a bespoke web system and most recently MultiQC - a tool that I have written to summarise analysis log files and produce reports that visualise key sample metrics.
In this talk I describe how our different systems integrate and how we use MultiQC results for both project level reporting and long term monitoring.
Using visual aids effectively
Using effective visual aids is important for getting across your message when describing data. This can be in a presentation, poster or paper. This talk goes through some basic design tips that can help your visual aids look professional and work effectively.
Written for the Enabling Excellence ETN. https://eetraining.wordpress.com/
Analysis of ChIP-Seq Data
This document discusses the bioinformatics analysis of ChIP-seq data. It begins with an overview of ChIP-seq experiments and the major steps in processing and analyzing the sequencing data, including quality control, alignment, peak calling, and downstream analyses. Pipelines for automated analysis are described, such as Cluster Flow and Nextflow. The talk emphasizes that there is no single correct approach and the analysis depends on the biological question and experimental design.
Internet McMenemy
The document discusses how the internet and websites work from a technical perspective. It covers how a web address is resolved to a server, the basic components of a webpage like HTML, CSS and images, how databases and templates allow dynamic content, and how cookies are used to store information on a user's browser. Real examples of code are provided to illustrate these concepts. Useful links are also included for hosting and creating websites.
More from Phil Ewels (12)
Lecture: NGS at the National Genomics Infrastructure
Lecture: NGS at the National Genomics Infrastructure
Whole Genome Sequencing - Data Processing and QC at SciLifeLab NGI
Whole Genome Sequencing - Data Processing and QC at SciLifeLab NGI
Developing Reliable QC at the Swedish National Genomics Infrastructure
Developing Reliable QC at the Swedish National Genomics Infrastructure
Recently uploaded
Bob Reedy - Nitrate in Texas Groundwater.pdf
Presented at June 6-7 Texas Alliance of Groundwater Districts Business Meeting
bordetella pertussis.................................ppt
Bordettela is a gram negative cocobacilli spread by air born drop let
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...
Travis Hills of Minnesota developed a method to convert waste into high-value dry fertilizer, significantly enriching soil quality. By providing farmers with a valuable resource derived from waste, Travis Hills helps enhance farm profitability while promoting environmental stewardship. Travis Hills' sustainable practices lead to cost savings and increased revenue for farmers by improving resource efficiency and reducing waste.
3D Hybrid PIC simulation of the plasma expansion (ISSS-14)
3D Particle-In-Cell (PIC) algorithm,
Plasma expansion in the dipole magnetic field.
8.Isolation of pure cultures and preservation of cultures.pdf
Isolation of pure culture, its various method.
Cytokines and their role in immune regulation.pptx
This presentation covers the content and information on "Cytokines " and their role in immune regulation .
Authoring a personal GPT for your research and practice: How we created the Q...
Thematic analysis in qualitative research is a time-consuming and systematic task, typically done using teams. Team members must ground their activities on common understandings of the major concepts underlying the thematic analysis, and define criteria for its development. However, conceptual misunderstandings, equivocations, and lack of adherence to criteria are challenges to the quality and speed of this process. Given the distributed and uncertain nature of this process, we wondered if the tasks in thematic analysis could be supported by readily available artificial intelligence chatbots. Our early efforts point to potential benefits: not just saving time in the coding process but better adherence to criteria and grounding, by increasing triangulation between humans and artificial intelligence. This tutorial will provide a description and demonstration of the process we followed, as two academic researchers, to develop a custom ChatGPT to assist with qualitative coding in the thematic data analysis process of immersive learning accounts in a survey of the academic literature: QUAL-E Immersive Learning Thematic Analysis Helper. In the hands-on time, participants will try out QUAL-E and develop their ideas for their own qualitative coding ChatGPT. Participants that have the paid ChatGPT Plus subscription can create a draft of their assistants. The organizers will provide course materials and slide deck that participants will be able to utilize to continue development of their custom GPT. The paid subscription to ChatGPT Plus is not required to participate in this workshop, just for trying out personal GPTs during it.
Applied Science: Thermodynamics, Laws & Methodology.pdf
When I was asked to give a companion lecture in support of ‘The Philosophy of Science’ (https://shorturl.at/4pUXz) I decided not to walk through the detail of the many methodologies in order of use. Instead, I chose to employ a long standing, and ongoing, scientific development as an exemplar. And so, I chose the ever evolving story of Thermodynamics as a scientific investigation at its best.
Conducted over a period of >200 years, Thermodynamics R&D, and application, benefitted from the highest levels of professionalism, collaboration, and technical thoroughness. New layers of application, methodology, and practice were made possible by the progressive advance of technology. In turn, this has seen measurement and modelling accuracy continually improved at a micro and macro level.
Perhaps most importantly, Thermodynamics rapidly became a primary tool in the advance of applied science/engineering/technology, spanning micro-tech, to aerospace and cosmology. I can think of no better a story to illustrate the breadth of scientific methodologies and applications at their best.
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...University of Maribor
Slides from talk:
Aleš Zamuda: Remote Sensing and Computational, Evolutionary, Supercomputing, and Intelligent Systems.
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Inter-Society Networking Panel GRSS/MTT-S/CIS Panel Session: Promoting Connection and Cooperation
https://www.etran.rs/2024/en/home-english/Sharlene Leurig - Enabling Onsite Water Use with Net Zero Water
Sharlene Leurig - Enabling Onsite Water Use with Net Zero WaterTexas Alliance of Groundwater Districts
Presented at June 6-7 Texas Alliance of Groundwater Districts Business Meeting在线办理(salfor毕业证书)索尔福德大学毕业证毕业完成信一模一样
学校原件一模一样【微信：741003700 】《(salfor毕业证书)索尔福德大学毕业证》【微信：741003700 】学位证，留信认证（真实可查，永久存档）原件一模一样纸张工艺/offer、雅思、外壳等材料/诚信可靠,可直接看成品样本，帮您解决无法毕业带来的各种难题！外壳，原版制作，诚信可靠，可直接看成品样本。行业标杆！精益求精，诚心合作，真诚制作！多年品质 ,按需精细制作，24小时接单,全套进口原装设备。十五年致力于帮助留学生解决难题，包您满意。
本公司拥有海外各大学样板无数，能完美还原。
1:1完美还原海外各大学毕业材料上的工艺：水印，阴影底纹，钢印LOGO烫金烫银，LOGO烫金烫银复合重叠。文字图案浮雕、激光镭射、紫外荧光、温感、复印防伪等防伪工艺。材料咨询办理、认证咨询办理请加学历顾问Q/微741003700
【主营项目】
一.毕业证【q微741003700】成绩单、使馆认证、教育部认证、雅思托福成绩单、学生卡等！
二.真实使馆公证(即留学回国人员证明,不成功不收费)
三.真实教育部学历学位认证（教育部存档！教育部留服网站永久可查）
四.办理各国各大学文凭(一对一专业服务,可全程监控跟踪进度)
如果您处于以下几种情况：
◇在校期间，因各种原因未能顺利毕业……拿不到官方毕业证【q/微741003700】
◇面对父母的压力，希望尽快拿到；
◇不清楚认证流程以及材料该如何准备；
◇回国时间很长，忘记办理；
◇回国马上就要找工作，办给用人单位看；
◇企事业单位必须要求办理的
◇需要报考公务员、购买免税车、落转户口
◇申请留学生创业基金
留信网认证的作用:
1:该专业认证可证明留学生真实身份
2:同时对留学生所学专业登记给予评定
3:国家专业人才认证中心颁发入库证书
4:这个认证书并且可以归档倒地方
5:凡事获得留信网入网的信息将会逐步更新到个人身份内，将在公安局网内查询个人身份证信息后，同步读取人才网入库信息
6:个人职称评审加20分
7:个人信誉贷款加10分
8:在国家人才网主办的国家网络招聘大会中纳入资料，供国家高端企业选择人才
Thornton ESPP slides UK WW Network 4_6_24.pdf
ESPP presentation to EU Waste Water Network, 4th June 2024 “EU policies driving nutrient removal and recycling
and the revised UWWTD (Urban Waste Water Treatment Directive)”
Compexometric titration/Chelatorphy titration/chelating titration
Classification
Metal ion ion indicators
Masking and demasking reagents
Estimation of Magnisium sulphate
Calcium gluconate
Complexometric Titration/ chelatometry titration/chelating titration, introduction, Types-
1.Direct Titration
2.Back Titration
3.Replacement Titration
4.Indirect Titration
Masking agent, Demasking agents
formation of complex
comparition between masking and demasking agents,
Indicators/Metal ion indicators/ Metallochromic indicators/pM indicators,
Visual Technique,PM indicators (metallochromic), Indicators of pH, Redox Indicators
Instrumental Techniques-Photometry
Potentiometry
Miscellaneous methods.
Complex titration with EDTA.
原版制作(carleton毕业证书)卡尔顿大学毕业证硕士文凭原版一模一样
原版纸张【微信：741003700 】【(carleton毕业证书)卡尔顿大学毕业证】【微信：741003700 】学位证，留信认证（真实可查，永久存档）offer、雅思、外壳等材料/诚信可靠,可直接看成品样本，帮您解决无法毕业带来的各种难题！外壳，原版制作，诚信可靠，可直接看成品样本。行业标杆！精益求精，诚心合作，真诚制作！多年品质 ,按需精细制作，24小时接单,全套进口原装设备。十五年致力于帮助留学生解决难题，包您满意。
本公司拥有海外各大学样板无数，能完美还原海外各大学 Bachelor Diploma degree, Master Degree Diploma
1:1完美还原海外各大学毕业材料上的工艺：水印，阴影底纹，钢印LOGO烫金烫银，LOGO烫金烫银复合重叠。文字图案浮雕、激光镭射、紫外荧光、温感、复印防伪等防伪工艺。材料咨询办理、认证咨询办理请加学历顾问Q/微741003700
留信网认证的作用:
1:该专业认证可证明留学生真实身份
2:同时对留学生所学专业登记给予评定
3:国家专业人才认证中心颁发入库证书
4:这个认证书并且可以归档倒地方
5:凡事获得留信网入网的信息将会逐步更新到个人身份内，将在公安局网内查询个人身份证信息后，同步读取人才网入库信息
6:个人职称评审加20分
7:个人信誉贷款加10分
8:在国家人才网主办的国家网络招聘大会中纳入资料，供国家高端企业选择人才
The binding of cosmological structures by massless topological defects
Assuming spherical symmetry and weak field, it is shown that if one solves the Poisson equation or the Einstein field
equations sourced by a topological defect, i.e. a singularity of a very specific form, the result is a localized gravitational
field capable of driving flat rotation (i.e. Keplerian circular orbits at a constant speed for all radii) of test masses on a thin
spherical shell without any underlying mass. Moreover, a large-scale structure which exploits this solution by assembling
concentrically a number of such topological defects can establish a flat stellar or galactic rotation curve, and can also deflect
light in the same manner as an equipotential (isothermal) sphere. Thus, the need for dark matter or modified gravity theory is
mitigated, at least in part.
Recently uploaded (20)
bordetella pertussis.................................ppt
bordetella pertussis.................................ppt
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...
3D Hybrid PIC simulation of the plasma expansion (ISSS-14)
3D Hybrid PIC simulation of the plasma expansion (ISSS-14)
8.Isolation of pure cultures and preservation of cultures.pdf
8.Isolation of pure cultures and preservation of cultures.pdf
Basics of crystallography, crystal systems, classes and different forms
Basics of crystallography, crystal systems, classes and different forms
Cytokines and their role in immune regulation.pptx
Cytokines and their role in immune regulation.pptx
Authoring a personal GPT for your research and practice: How we created the Q...
Authoring a personal GPT for your research and practice: How we created the Q...
Applied Science: Thermodynamics, Laws & Methodology.pdf
Applied Science: Thermodynamics, Laws & Methodology.pdf
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...
Sharlene Leurig - Enabling Onsite Water Use with Net Zero Water
Sharlene Leurig - Enabling Onsite Water Use with Net Zero Water
Compexometric titration/Chelatorphy titration/chelating titration
Compexometric titration/Chelatorphy titration/chelating titration
The binding of cosmological structures by massless topological defects
The binding of cosmological structures by massless topological defects
ELIXIR Proteomics Community - Connection with nf-core
- 1. ELIXIR Proteomics Community Nextflow nf-core Community A joint effort on the standardization of analytical workflows Phil Ewels 2020-09-28
- 2. A community effort to collect a curated set of analysis pipelines built using Nextflow.
- 12. Community
- 13. Adding a pipeline Step 1 2 3 Join the nf-core community https://nf-co.re/join
- 14. Adding a pipeline Step 1 2 3 Join the nf-core community #new-pipelines
- 15. Adding a pipeline 1 Step 2 3 Create a pipeline from the template
- 16. Adding a pipeline 1 Step 2 3 nf-core create
- 17. Adding a pipeline 1 Step 2 3 nf-core lint .
- 18. 1 Step 2 3 Adding a pipeline
- 19. 1 Step 2 3 Adding a pipeline
- 20. 1 Step 2 3 Adding a pipeline
- 21. Adding a pipeline 1 2 Step 3 Community review and release! Pull request Automated testing Release DOI per release Benchmark
- 22. Proteomics Proteomics label-free quantification (LFQ) analysis pipeline using OpenMS and MSstats, with feature quantification, feature summarization, quality control and group-based statistical analysis.. Julianus Pfeuffer, Lukas Heumos, Leon Bichmann, Timo Sachsenberg, Yasset Perez-Riverol. https://nf-co.re/proteomicslfq/
- 23. Proteomics Automated quantitative analysis of DIA proteomics mass spectrometry measurements. Leon Bichmann https://nf-co.re/diaproteomics
- 24. Proteomics Identify and quantify MHC eluted peptides from mass spectrometry raw data. Pipeline for quantitative processing of data dependent (DDA) peptidomics data, specifically designed to analyse immunopeptidomics data, which deals with the analysis of affinity purified, unspecifically cleaved peptides that have recently been discussed intensively in the context of cancer vaccines. Leon Bichmann, Lukas Heumos and Alexander Peltzer. https://nf-co.re/mhcquant
- 25. Proteomics Quantitative shotgun MS proteomics. Jorrit Boekel https://nf-co.re/ddamsproteomics
- 26. Schema [ live demo ]
- 27. DSL2 $ nf-core modules install fastqc Copies module files in to pipeline Metadata file tracks git hash of modules repo CI linting checks files not edited Update script pulls latest versions
- 28. Documentation Slack workspace Hackathons Twitter updates Starter template Code guidelines Helper tools CI code linting and tests Stable pipelines Centralised configs Download for offline use List and update pipelines