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KCNQ2 gene discovery; 
Epilepsy mechanism, and other ion 
channel mutations in epilepsy 
Dr. Sarah Weckhuysen, MD, PhD 
Neurogenetics Group, VIB-Department of Molecular Genetics 
University of Antwerp, Belgium
Sarah Weckhuysen 
Financial Disclosures 
 No relevant financial relationships with 
any commercial interests.
INTRODUCTION: WHAT 
IS EPILEPSY?
Epilepsy 
Common 
• Prevalence 4-8/1000 
• Life time incidence 3% 
Key symptom = seizures 
• Abnormal synchronization of cortical neurons 
• Hyperexcitable neurons 
Epilepsy = channelopathy
Ligand and voltage gated ion 
channels 
H. Lerche et al., J. Physiol. 2013
Epilepsy 
 Excitation 
 Inhibition
Causes of epilepsy 
Figure 1 Advances in understanding the causes of epilepsy 
Thomas, R. H. & Berkovic, S. F. (2014) The hidden genetics of epilepsy—a clinically important 
new paradigm 
Nat. Rev. Neurol. doi:10.1038/nrneurol.2014.62
Monogenetic epilepsies 
(non-exhaustive) 
ALG13 GABRG2 PLCB1 
ARHGEF9 GRIN2A PRRT2 
ARX GRIN2B PNKP 
ATP1A2 HCN1 SCN1A 
CDKL5 KCNJ11 SCN1B 
CHD2 KCNQ2 SCN2A 
CHRNA4 KCNQ3 SCN8A 
CHRNB2 KCNMA1 SLC25A22 
CHRNA2 KCNT1 SLC2A1 
DEPDC5 LGI1 SPTAN1 
FOXG1 MEF2C STXBP1 
GABRA1 NRX1 SYNGAP1 
GABRB3 PCDH19 TBC1D24 
Ion channel genes
THE GENE KCNQ2 IN 
EPILEPSY
Voltage gated potassium 
channels 
◦ Humans: > 70 potassium channel genes 
◦ Small family of voltage gated KCNQ 
genes: KCNQ1-5 
 KCNQ1: cardiac arrythmia (LQTS) 
 KCNQ2/3: epilepsy 
 KCNQ4: deafness
KCNQ2 
• Encoding voltage gated potassium 
channel subunit Kv7.2 
• Hyperpolarizing M current 
• Stabilizes neuronal excitability
Heteromeric KCNQ2/KCNQ3 
channels 
Front. Pharmacol., 23 March 2012
Benign Familial Neonatal 
Seizures (BFNS) 
• Autosomal dominant 
• Seizures onset between 2 - 8 days, 
remission within first months of life 
• Seizures: tonic -> autonomic and motor 
changes, uni- or bilateral. Often with 
episodes of apnea 
• Investigations normal 
• Psychomotor development normal 
• Small increased risk of recurring seizures 
later in life
1998: KCNQ2 and KCNQ3 in 
BFNS 
Missense, nonsense, splicing, frameshift mutations, 
intragenic insertions/deletions, whole gene 
deletions described
Where the story starts 
 KCNQ2 screening offered for neonatal 
seizures in diagnostic unit 
◦ 2010: 1 patient: refractory seizures and 
psychomotor regression 
 Literature 
◦ 4 case reports of patients with neonatal 
seizures and intellectual disability 
(Dedek et al 2003, Borgatti et al 2004, Schmitt et al 2005, 
Steinlein et al. 2007)
Methods 
• KCNQ2 and KCNQ3 screening in 80 
patients with unexplained neonatal or 
early onset epileptic encephalopathy 
• Onset < 3 months 
• Slowing of psychomotor development 
• Metabolic screening normal 
• Imaging: no explanation 
• Genetic screening for relevant genes normal 
Weckhuysen et al, Ann. Neurol. 2012
Results 
 No KCNQ3 mutations 
 7 novel KCNQ2 missense mutations in 8/80 
patients (10%) 
 Not present in 276 ethnically matched controls 
 Inheritance 
 6 mutations de novo 
 1 paternal DNA unavailable 
 1 mosaic father 
Weckhuysen et al, Ann. Neurol. 2012
 September 2014: 
◦ 62 patients with KCNQ2 encephalopathy 
described in literature 
 44 different mutations 
◦ 21 additional non-reported European 
patients 
 8 novel mutations
KCNQ2 encephalopathy 
• 10% of patients with neonatal EE of unknown 
etiology 
• KCNQ2 encephalopathy mutations 
 All missense mutations 
• Several mutations recurrent in multiple patients 
• Several mutations in same codon 
 Novel: not reported in BFNS 
• Inheritance 
 de novo 
 1 mosaic father with BNS phenotype
KCNQ2 encephalopathy 
• Neonatal onset 
1 patient onset at 5 months 
• Seizure type at onset 
Prominent tonic component 
Often autonomic features: apnea, desaturation, bradycardia 
• Dramatic onset, multiple sz daily 
• EEG at onset burst-suppression pattern or multifocal 
epileptic activity 
• Range of cognitive outcome, mostly severe to 
profound intellectual disability
MECHANISM
BFNS KCNQ2 mutation 
KCNQ2 
encephalopathy 
? 
20-50% reduction of M current. 
(Few cases with dominant negative effect: BFNS+myokymia) 
=> Haploinsufficiency
Mechanism 
Orhan et al., Annals of Neurology, 2014
Mechanism 
5/7 mutations: dominant negative effect on channel function 
Orhan et al., Annals of Neurology, 2014
Mouse model of dominant 
negative mutation 
-Transgenic adult mice carrying dominant negative KCNQ2 
mutation 
- recurrent spontaneous seizures 
- impaired spatial learning 
- marked hyperactivity 
- Pyramidal neurons 
- diminished M-type K+ current, hyperexcitable 
- Studies of hippocampal sections 
- laminar disorganization of area CA1
KCNQ2 spectrum 
KCNQ2 
encephalopathy 
Functional aspects mutation + genetic 
background 
BFNS KCNQ2 
- Mostly Inherited - Mostly de novo 
- Mozaicism described in 
inherited cases
SCN1A
SCN1A 
 Encoding Nav1.1
SCN1A 
 1997 
FEVER SENSITIVITY 
Clinical description GEFS+ syndrome (Scheffer et 
al.) 
 2000 
SCN1A mutation in large GEFS+ family (Escayg 
et al.) 
 2001 
SCN1A mutation in 7/7 patients with Dravet 
syndrome (Claes et al.) 
 Follow up studies: SCN1A 
mutations/deletions in 70-80% of Dravet 
patients
LOF mutation in excitatory ion channel 
subunit 
?? 
Epilepsy
?? 
GEFS+ SCN1A mutation 
Dravet
General Rule 
 GEFS+ 
◦ Missense mutations 
 Outside pore region 
 SMEI 
◦ Truncating mutations, splice site mutations, 
deletions 
◦ Missense mutations 
 In pore region 
 More often changes in AA polarity 
BUT exceptions!!
Ion channel spectrum 
KCNQ2 
Functional aspects mutation + genetic 
background 
encephalopathy 
BFNS KCNQ2 
- Mostly Inherited - Mostly de novo 
- Mozaicism described in 
inherited cases 
GEFS+ SCN1A Dravet Syndrome 
Functional aspects mutation + genetic 
background
SCN2A
 Encoding Nav1.2
Nav1.6
SCN2A in BFNIS 
 Benign familial neonatal-infantile 
seizures 
• Autosomal dominant 
• Seizures onset between 2 days and 7 months, 
remission by 12 months of life 
• Investigations normal; Psychomotor development 
normal 
2002: SCN2A mutations in BFNIS. All missense 
mutations
SCN2A encephalopathy
Genotype-phenotype 
correlation 
• Across all phenotypes 
• Most mutations = missense mutations 
• BFNIS predominantly in transmembrane domains 
(TMD), “severe” mutations more outside TMD 
• Both net gain vs. loss of function described 
• All truncating mutations => EE/ID/autism 
• No conclusive results (yet)
SCN2A spectrum 
KCNQ2 
Functional aspects mutation + genetic 
background 
encephalopathy 
BFNS KCNQ2 
- Mostly Inherited - Mostly de novo 
BFNIS SCN2A SCN2A encephalopathy 
- Mozaicism described in 
inherited cases 
GEFS+ SCN1A Dravet Syndrome 
Functional aspects mutation + genetic 
background
KCNT1
KCNT1 
 Sodium-gated potassium channel 
 Slow hyperpolarization that follows 
repetitive firing 
 C-terminal cytoplasmic domain 
interacts with protein network 
including FMRP
KCNT1
ADNFLE 
Heron et al., 2012
MMPSI (EIMFS) 
 Onset < 6 months 
 Polymorphic focal seizures 
 Migrating ictal EEG pattern 
 Arrest of psychomotor development 
Barcia et al., 2012
Milligan et al., Annals of Neurology 2014
Ion channel genes in monogenetic epilepsies 
Gene Benign Severe/Epileptic encephalopathies 
CACNA1A Absence epilepsy + EA 
CHRNA4 ADNFLE 
CHRNB2 ADNFLE 
CHRNA2 ADNFLE 
GABRA1 GEFS+, JME Dravet 
GABRB3 EE 
GABRG2 GEFS+ (with CAE) 
GRIN2A BRE CSWS/LKS 
GRIN2B EE 
HCN1 Dravet 
KCNA1 Focal epilepsy + EA 
KCNJ11 Neonatal diabetes + Epi + DD 
KCNQ2 BFNS Ohtahara, neonatal EE 
KCNQ3 BFNS Neonatal epi +MR 
KCNMA1 IGE + PD 
KCNT1 ADNFLE MMPSI 
SCN1A GEFS+ Dravet, MMPSI 
SCN1B GEFS+ Dravet 
SCN2A BFNIS Ohtahara, EE 
SCN8A EE
TREATMENT 
CONSEQUENCES?
Dravet syndrome with SCN1A 
mutation 
SCN1A loss of function 
 Aggravation of sz by sodium channel 
blockers 
(carbamazepine, oxcarbazepine, 
lamotrigine,…)
KCNQ2 encephalopathy 
 Dominant negative effect 
◦ Potassium channel opener retigabine
SCN2A encephalopathy 
 Some patients respond well to sodium 
channel blockers (study ongoing)
MMPSI with KCNT1 mutation
ORIGIN OF ID IN EPILEPSIES 
DUE TO ION CHANNEL 
MUTATIONS
Dravet syndrome 
◦ Clinical 
 No strict correlation seizure severity - outcome 
 Treatment change later in life => improvement 
cognition 
◦ Functional 
 siRNA in basal forebrain adult rats for 4 days
KCNQ2 encephalopathy 
◦ Clinical 
 No strict correlation seizure severity – outcome 
◦ Functional 
 Normal hippocampal morphology, not hyperactive, no 
overt behavioral seizures 
 Impaired spatial learning 
 Reduced M-type K+ current and neuronal 
hyperexcitability
SCN2A 
 De novo mutations in patients with 
ID/autism without epilepsy
Epilepsy and ID 
Seizures do not explain everything 
=> Target cause not only symptom 
=> New strategies for treatment development
Neurogenetics group - 
epilepsy 
◦ Rik Hendrickx 
◦ Tine Deconinck 
◦ Jolien Roovers 
◦ Tania Djémié 
◦ Katia Hardies 
◦ Arvid Suls 
◦ Peter De Jonghe 
SPECIAL THANKS TO: 
Parents and patients with 
KCNQ2 mutations 
All treating physicians of 
patients with KCNQ2 
mutations 
Contact: sarahweck@hotmail.com

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Dr. sarah weckhuysen kcnq2 Cure summit parent track learn more at kcnq2cure.org

  • 1. KCNQ2 gene discovery; Epilepsy mechanism, and other ion channel mutations in epilepsy Dr. Sarah Weckhuysen, MD, PhD Neurogenetics Group, VIB-Department of Molecular Genetics University of Antwerp, Belgium
  • 2. Sarah Weckhuysen Financial Disclosures  No relevant financial relationships with any commercial interests.
  • 4. Epilepsy Common • Prevalence 4-8/1000 • Life time incidence 3% Key symptom = seizures • Abnormal synchronization of cortical neurons • Hyperexcitable neurons Epilepsy = channelopathy
  • 5.
  • 6. Ligand and voltage gated ion channels H. Lerche et al., J. Physiol. 2013
  • 7. Epilepsy  Excitation  Inhibition
  • 8. Causes of epilepsy Figure 1 Advances in understanding the causes of epilepsy Thomas, R. H. & Berkovic, S. F. (2014) The hidden genetics of epilepsy—a clinically important new paradigm Nat. Rev. Neurol. doi:10.1038/nrneurol.2014.62
  • 9. Monogenetic epilepsies (non-exhaustive) ALG13 GABRG2 PLCB1 ARHGEF9 GRIN2A PRRT2 ARX GRIN2B PNKP ATP1A2 HCN1 SCN1A CDKL5 KCNJ11 SCN1B CHD2 KCNQ2 SCN2A CHRNA4 KCNQ3 SCN8A CHRNB2 KCNMA1 SLC25A22 CHRNA2 KCNT1 SLC2A1 DEPDC5 LGI1 SPTAN1 FOXG1 MEF2C STXBP1 GABRA1 NRX1 SYNGAP1 GABRB3 PCDH19 TBC1D24 Ion channel genes
  • 10. THE GENE KCNQ2 IN EPILEPSY
  • 11. Voltage gated potassium channels ◦ Humans: > 70 potassium channel genes ◦ Small family of voltage gated KCNQ genes: KCNQ1-5  KCNQ1: cardiac arrythmia (LQTS)  KCNQ2/3: epilepsy  KCNQ4: deafness
  • 12. KCNQ2 • Encoding voltage gated potassium channel subunit Kv7.2 • Hyperpolarizing M current • Stabilizes neuronal excitability
  • 13. Heteromeric KCNQ2/KCNQ3 channels Front. Pharmacol., 23 March 2012
  • 14. Benign Familial Neonatal Seizures (BFNS) • Autosomal dominant • Seizures onset between 2 - 8 days, remission within first months of life • Seizures: tonic -> autonomic and motor changes, uni- or bilateral. Often with episodes of apnea • Investigations normal • Psychomotor development normal • Small increased risk of recurring seizures later in life
  • 15. 1998: KCNQ2 and KCNQ3 in BFNS Missense, nonsense, splicing, frameshift mutations, intragenic insertions/deletions, whole gene deletions described
  • 16. Where the story starts  KCNQ2 screening offered for neonatal seizures in diagnostic unit ◦ 2010: 1 patient: refractory seizures and psychomotor regression  Literature ◦ 4 case reports of patients with neonatal seizures and intellectual disability (Dedek et al 2003, Borgatti et al 2004, Schmitt et al 2005, Steinlein et al. 2007)
  • 17. Methods • KCNQ2 and KCNQ3 screening in 80 patients with unexplained neonatal or early onset epileptic encephalopathy • Onset < 3 months • Slowing of psychomotor development • Metabolic screening normal • Imaging: no explanation • Genetic screening for relevant genes normal Weckhuysen et al, Ann. Neurol. 2012
  • 18. Results  No KCNQ3 mutations  7 novel KCNQ2 missense mutations in 8/80 patients (10%)  Not present in 276 ethnically matched controls  Inheritance  6 mutations de novo  1 paternal DNA unavailable  1 mosaic father Weckhuysen et al, Ann. Neurol. 2012
  • 19.
  • 20.
  • 21.  September 2014: ◦ 62 patients with KCNQ2 encephalopathy described in literature  44 different mutations ◦ 21 additional non-reported European patients  8 novel mutations
  • 22. KCNQ2 encephalopathy • 10% of patients with neonatal EE of unknown etiology • KCNQ2 encephalopathy mutations  All missense mutations • Several mutations recurrent in multiple patients • Several mutations in same codon  Novel: not reported in BFNS • Inheritance  de novo  1 mosaic father with BNS phenotype
  • 23. KCNQ2 encephalopathy • Neonatal onset 1 patient onset at 5 months • Seizure type at onset Prominent tonic component Often autonomic features: apnea, desaturation, bradycardia • Dramatic onset, multiple sz daily • EEG at onset burst-suppression pattern or multifocal epileptic activity • Range of cognitive outcome, mostly severe to profound intellectual disability
  • 25. BFNS KCNQ2 mutation KCNQ2 encephalopathy ? 20-50% reduction of M current. (Few cases with dominant negative effect: BFNS+myokymia) => Haploinsufficiency
  • 26. Mechanism Orhan et al., Annals of Neurology, 2014
  • 27. Mechanism 5/7 mutations: dominant negative effect on channel function Orhan et al., Annals of Neurology, 2014
  • 28. Mouse model of dominant negative mutation -Transgenic adult mice carrying dominant negative KCNQ2 mutation - recurrent spontaneous seizures - impaired spatial learning - marked hyperactivity - Pyramidal neurons - diminished M-type K+ current, hyperexcitable - Studies of hippocampal sections - laminar disorganization of area CA1
  • 29. KCNQ2 spectrum KCNQ2 encephalopathy Functional aspects mutation + genetic background BFNS KCNQ2 - Mostly Inherited - Mostly de novo - Mozaicism described in inherited cases
  • 30. SCN1A
  • 32. SCN1A  1997 FEVER SENSITIVITY Clinical description GEFS+ syndrome (Scheffer et al.)  2000 SCN1A mutation in large GEFS+ family (Escayg et al.)  2001 SCN1A mutation in 7/7 patients with Dravet syndrome (Claes et al.)  Follow up studies: SCN1A mutations/deletions in 70-80% of Dravet patients
  • 33.
  • 34. LOF mutation in excitatory ion channel subunit ?? Epilepsy
  • 35.
  • 36. ?? GEFS+ SCN1A mutation Dravet
  • 37. General Rule  GEFS+ ◦ Missense mutations  Outside pore region  SMEI ◦ Truncating mutations, splice site mutations, deletions ◦ Missense mutations  In pore region  More often changes in AA polarity BUT exceptions!!
  • 38. Ion channel spectrum KCNQ2 Functional aspects mutation + genetic background encephalopathy BFNS KCNQ2 - Mostly Inherited - Mostly de novo - Mozaicism described in inherited cases GEFS+ SCN1A Dravet Syndrome Functional aspects mutation + genetic background
  • 39. SCN2A
  • 42. SCN2A in BFNIS  Benign familial neonatal-infantile seizures • Autosomal dominant • Seizures onset between 2 days and 7 months, remission by 12 months of life • Investigations normal; Psychomotor development normal 2002: SCN2A mutations in BFNIS. All missense mutations
  • 44. Genotype-phenotype correlation • Across all phenotypes • Most mutations = missense mutations • BFNIS predominantly in transmembrane domains (TMD), “severe” mutations more outside TMD • Both net gain vs. loss of function described • All truncating mutations => EE/ID/autism • No conclusive results (yet)
  • 45. SCN2A spectrum KCNQ2 Functional aspects mutation + genetic background encephalopathy BFNS KCNQ2 - Mostly Inherited - Mostly de novo BFNIS SCN2A SCN2A encephalopathy - Mozaicism described in inherited cases GEFS+ SCN1A Dravet Syndrome Functional aspects mutation + genetic background
  • 46. KCNT1
  • 47. KCNT1  Sodium-gated potassium channel  Slow hyperpolarization that follows repetitive firing  C-terminal cytoplasmic domain interacts with protein network including FMRP
  • 48. KCNT1
  • 49. ADNFLE Heron et al., 2012
  • 50. MMPSI (EIMFS)  Onset < 6 months  Polymorphic focal seizures  Migrating ictal EEG pattern  Arrest of psychomotor development Barcia et al., 2012
  • 51. Milligan et al., Annals of Neurology 2014
  • 52. Ion channel genes in monogenetic epilepsies Gene Benign Severe/Epileptic encephalopathies CACNA1A Absence epilepsy + EA CHRNA4 ADNFLE CHRNB2 ADNFLE CHRNA2 ADNFLE GABRA1 GEFS+, JME Dravet GABRB3 EE GABRG2 GEFS+ (with CAE) GRIN2A BRE CSWS/LKS GRIN2B EE HCN1 Dravet KCNA1 Focal epilepsy + EA KCNJ11 Neonatal diabetes + Epi + DD KCNQ2 BFNS Ohtahara, neonatal EE KCNQ3 BFNS Neonatal epi +MR KCNMA1 IGE + PD KCNT1 ADNFLE MMPSI SCN1A GEFS+ Dravet, MMPSI SCN1B GEFS+ Dravet SCN2A BFNIS Ohtahara, EE SCN8A EE
  • 54. Dravet syndrome with SCN1A mutation SCN1A loss of function  Aggravation of sz by sodium channel blockers (carbamazepine, oxcarbazepine, lamotrigine,…)
  • 55. KCNQ2 encephalopathy  Dominant negative effect ◦ Potassium channel opener retigabine
  • 56. SCN2A encephalopathy  Some patients respond well to sodium channel blockers (study ongoing)
  • 57. MMPSI with KCNT1 mutation
  • 58.
  • 59. ORIGIN OF ID IN EPILEPSIES DUE TO ION CHANNEL MUTATIONS
  • 60. Dravet syndrome ◦ Clinical  No strict correlation seizure severity - outcome  Treatment change later in life => improvement cognition ◦ Functional  siRNA in basal forebrain adult rats for 4 days
  • 61. KCNQ2 encephalopathy ◦ Clinical  No strict correlation seizure severity – outcome ◦ Functional  Normal hippocampal morphology, not hyperactive, no overt behavioral seizures  Impaired spatial learning  Reduced M-type K+ current and neuronal hyperexcitability
  • 62. SCN2A  De novo mutations in patients with ID/autism without epilepsy
  • 63. Epilepsy and ID Seizures do not explain everything => Target cause not only symptom => New strategies for treatment development
  • 64. Neurogenetics group - epilepsy ◦ Rik Hendrickx ◦ Tine Deconinck ◦ Jolien Roovers ◦ Tania Djémié ◦ Katia Hardies ◦ Arvid Suls ◦ Peter De Jonghe SPECIAL THANKS TO: Parents and patients with KCNQ2 mutations All treating physicians of patients with KCNQ2 mutations Contact: sarahweck@hotmail.com

Editor's Notes

  1. 1h
  2. FIGUUR!
  3. After 2007: silence
  4. Mutations affecting the pore region of the Kv7.2 channels showed a striking loss-of-function. Up: when expressed in Xenopus laevis oocytes, they yielded almost no currents. Below: In these experiments the injected amont of the WT was the same when it was expressed alone (left) or together with each of these mutations (right), but in the presence of mutations the WT currents were dramatically reduced, revealing that the mutant channels exerted a strong dominant-negative effect on the WT channel. The dominant-negative effect is known only for a few Kv7.2 mutations associated with neonatal seizures and is not as pronounced.
  5. Partly replaced by Nav1.6 (SCN8A) during maturation
  6. 6/12 patients + 1 OS patient (exome study)
  7. Pooled current
  8. PAPERS?
  9. Impaired spatial performance was associated with a dysregulation of theta frequency in hippocampus
  10. Doxycycline during the first 1–3 weeks of life => normal KCNQ channels during early development, blocked channels thereafter