This document discusses strategies for genome-wide mutagenesis. It describes three main strategies: transposon insertion, gene disruption through allelic exchange, and expression inhibition using antisense RNA. Transposon insertion involves using transposable elements to randomly insert into genomes. Gene disruption uses targeted homologous recombination to replace genes. Antisense RNA inhibits gene expression by binding to target mRNA. The document also discusses various methods for detecting mutations, such as single-strand conformation polymorphism and allele-specific oligonucleotide hybridization.
This document summarizes the structure and characteristics of three plant virus families: Geminiviridae, Virgaviridae, and Bromoviridae. Geminiviridae includes tomato yellow leaf curl virus, which has a twinned capsid structure and circular single-stranded DNA genome. Virgaviridae features tobacco mosaic virus as a rod-shaped virus with RNA enclosed in a helical protein coating. Bromoviridae encompasses cucumber mosaic virus, an icosahedral virus with segmented RNA genomes, and alpha-alpha mosaic viruses that have elongated capsids carrying three RNA segments.
This document discusses the mechanisms by which DNA and RNA viruses can transform cells and cause cancer. It explains that viruses can integrate their genetic material into host cell DNA, activating oncogenes and inactivating tumor suppressor genes. This disrupts the normal cell growth and division processes. Oncogenic viruses are classified based on their genetic material as either DNA tumor viruses or RNA tumor viruses, which are retroviruses. The document provides examples of specific human oncogenic viruses and discusses how viral oncogenes activate and the multi-step process of oncogenesis. Both acute and chronic transforming retroviruses are described.
This document discusses bacteriophage T4, a virus that infects E. coli bacteria. It has a complex protein coat and large double-stranded DNA genome. T4 uses the host cell's machinery to replicate and kills the host cell. T4 plays a role in cholera and diphtheria by carrying toxin genes that allow the bacteria to cause disease. Bacteriophage may be useful for treating antibiotic-resistant bacteria or infections where antibiotics cannot reach. T4 is also used in recombinant DNA technology.
Plasmids are extra-chromosomal DNA molecules found in bacteria that can replicate independently of chromosomal DNA. They vary in size but are usually between 1,000 to 25,000 base pairs. Plasmids are not essential for bacterial survival but can contain genes that allow bacteria to survive better in adverse environments or compete with other microbes. There are several classes of plasmids including F-plasmids for conjugation, R-plasmids for antibiotic resistance, Col-plasmids for bacteriocin production, and virulence plasmids that make bacteria pathogenic. Bacteria can exchange plasmids through conjugation, transformation, or transduction. Plasmids are useful tools in molecular biology and
Baculovirus-Insect cell expression system is one of the most popular eukaryotic expression systems for research and industrial applications. There are several advantages of using the baculovirus-Insect cell expression system, such as improved solubility, ability to incorporate post-translational modifications, and higher yield of secreted proteins.
https://www.creative-biogene.com/Services/Baculovirus-Insect-cell-expression-system.html
This document discusses strategies for genome-wide mutagenesis. It describes three main strategies: transposon insertion, gene disruption through allelic exchange, and expression inhibition using antisense RNA. Transposon insertion involves using transposable elements to randomly insert into genomes. Gene disruption uses targeted homologous recombination to replace genes. Antisense RNA inhibits gene expression by binding to target mRNA. The document also discusses various methods for detecting mutations, such as single-strand conformation polymorphism and allele-specific oligonucleotide hybridization.
This document summarizes the structure and characteristics of three plant virus families: Geminiviridae, Virgaviridae, and Bromoviridae. Geminiviridae includes tomato yellow leaf curl virus, which has a twinned capsid structure and circular single-stranded DNA genome. Virgaviridae features tobacco mosaic virus as a rod-shaped virus with RNA enclosed in a helical protein coating. Bromoviridae encompasses cucumber mosaic virus, an icosahedral virus with segmented RNA genomes, and alpha-alpha mosaic viruses that have elongated capsids carrying three RNA segments.
This document discusses the mechanisms by which DNA and RNA viruses can transform cells and cause cancer. It explains that viruses can integrate their genetic material into host cell DNA, activating oncogenes and inactivating tumor suppressor genes. This disrupts the normal cell growth and division processes. Oncogenic viruses are classified based on their genetic material as either DNA tumor viruses or RNA tumor viruses, which are retroviruses. The document provides examples of specific human oncogenic viruses and discusses how viral oncogenes activate and the multi-step process of oncogenesis. Both acute and chronic transforming retroviruses are described.
This document discusses bacteriophage T4, a virus that infects E. coli bacteria. It has a complex protein coat and large double-stranded DNA genome. T4 uses the host cell's machinery to replicate and kills the host cell. T4 plays a role in cholera and diphtheria by carrying toxin genes that allow the bacteria to cause disease. Bacteriophage may be useful for treating antibiotic-resistant bacteria or infections where antibiotics cannot reach. T4 is also used in recombinant DNA technology.
Plasmids are extra-chromosomal DNA molecules found in bacteria that can replicate independently of chromosomal DNA. They vary in size but are usually between 1,000 to 25,000 base pairs. Plasmids are not essential for bacterial survival but can contain genes that allow bacteria to survive better in adverse environments or compete with other microbes. There are several classes of plasmids including F-plasmids for conjugation, R-plasmids for antibiotic resistance, Col-plasmids for bacteriocin production, and virulence plasmids that make bacteria pathogenic. Bacteria can exchange plasmids through conjugation, transformation, or transduction. Plasmids are useful tools in molecular biology and
Baculovirus-Insect cell expression system is one of the most popular eukaryotic expression systems for research and industrial applications. There are several advantages of using the baculovirus-Insect cell expression system, such as improved solubility, ability to incorporate post-translational modifications, and higher yield of secreted proteins.
https://www.creative-biogene.com/Services/Baculovirus-Insect-cell-expression-system.html
Escherichia coli is a model organism widely used in genetic analysis and research. It has a small genome of 4.6 Mb contained on a single circular chromosome. It reproduces asexually through cell division but also has a sexual cycle where cells exchange DNA. E. coli was chosen as a model organism in the 1940s due to its small size, low cost of growth, and ability to produce large numbers of cells for genetic analysis. It has contributed greatly to our understanding of areas like DNA replication, transcription, translation, gene regulation, and recombinant DNA technology.
The document summarizes key information about the Ti plasmid found in Agrobacterium tumefaciens bacteria. Some key points:
1) Ti plasmid is found in A. tumefaciens, a soil bacterium that can naturally transform plant cells and cause crown gall tumors through T-DNA integration into the plant genome.
2) The Ti plasmid contains a T-DNA region flanked by left and right border sequences that is transferred to plant cells. The T-DNA contains genes encoding hormones and opines.
3) Ti plasmids can be classified based on the type of opine gene present (nopaline, octopine, agropine). Ti plasmids are
This document discusses the Cauliflower Mosaic Virus (CaMV) and its potential use for gene transfer in plants. CaMV is a plant virus that infects brassica plants like cauliflower and turnips. It has a circular double-stranded DNA genome and is spherical in shape. The 35S promoter from CaMV is commonly used in plant transformation due to its strong constitutive expression in dicots. For gene transfer, foreign DNA can be inserted into the non-essential genes II or VII of CaMV. However, CaMV has limitations for gene transfer due to its limited insertion capacity and loss of infectivity if too many nucleotides are added.
Lectut btn-202-ppt-l4. bacteriophage lambda and m13 vectors (1)Rishabh Jain
This document describes the bacteriophages λ and M13, which are commonly used as cloning vectors. λ phage is a temperate phage that infects E. coli and has a double-stranded linear DNA genome. Its genome is organized into regions that encode proteins for the phage head, tail, and lysogeny/lysis functions. M13 is a filamentous phage with a single-stranded circular genome. Both phages can be modified and used to insert and replicate foreign DNA fragments in E. coli for cloning purposes.
This document discusses techniques for purifying viruses, specifically density gradient centrifugation and isopycnic centrifugation. Density gradient centrifugation separates particles based on their buoyant densities by layering solutions of decreasing density in a centrifuge tube, then centrifuging the virus sample on top for a short time. This allows different viruses to separate into discrete zones based on their sedimentation rates. Isopycnic centrifugation forms the density gradient during a long, high-speed centrifugation, allowing separation of particles that differ slightly in density but not size. Precipitation with ammonium sulfate or ethanol can also be used to purify viruses.
Simian virus 40 (SV40) is a DNA virus that can cause tumors in monkeys and humans, and it was first identified as a contaminant in polio vaccines in the 1960s. SV40 has been widely used as a cloning vector due to its ability to efficiently deliver genes into a variety of cells without killing the host cell or eliciting an immune response. Future research prospects for SV40 vectors include developing recombinant versions for gene transfer applications and furthering understanding of related retroviruses.
Agrobacterium tumefaciens is a soil bacterium that can transfer DNA fragments called T-DNA from its tumor-inducing (Ti) plasmid into the genome of plant cells. Scientists have harnessed this natural ability of A. tumefaciens by modifying its Ti plasmid to replace the tumor-causing genes with a gene of interest. This disarmed Ti plasmid, along with helper plasmids containing virulence genes, allows for the stable integration and expression of the new gene in plant cells. Common transformation methods using A. tumefaciens involve culturing plant explants like leaf disks with Agrobacteria containing the modified Ti plasmid, then regenerating transgenic plants from the transformed cells
What are an expression vector? Detailed description of plant gene structure. Plant expression vector systems are generally consists of Ri and Ti plasmids.
The other vectors which are generally used are DNA and RNA viruses.
The document provides an introduction to bioinformatics and describes the Bangalore University syllabus for the BTH - 205: Bioinformatics course. It includes 5 units that cover topics such as introduction to computers, computer networks and programming languages, databases, biological databases, and protein structure prediction. The course aims to teach students key concepts and tools in bioinformatics.
1. Bovine papillomavirus (BPV) vectors utilize the circular, double-stranded DNA genome of BPV. The BPV genome contains early and late regions and can transform cells without integrating.
2. There are three main types of BPV vectors. All contain the transforming 69% fragment of BPV and bacterial sequences. One type inserts a gene of interest, another adds a stimulating gene, and the third uses the full BPV genome.
3. Transformation efficiency is highest with the full BPV genome due to an enhancer in the non-transforming region. Stimulating genes can replace this enhancer's function when parts of the genome are removed. BPV vectors provide amplified
This document summarizes Agrobacterium-mediated plant transformation. It describes how the soil bacterium Agrobacterium tumefaciens causes crown gall disease in plants by transferring oncogenic T-DNA from its Ti plasmid into the plant genome. Scientists have exploited this natural process to develop transformation systems where they insert new genes between the border sequences of disarmed Ti plasmids, allowing transfer of the recombinant T-DNA into plant cells. While effective in dicots, transformation of monocots proved more difficult due to their limited regeneration ability, though biolistic methods using microprojectile bombardment have succeeded in some important crop species.
Lectut btn-202-ppt-l11. enzymes used in genetic engineering-iiRishabh Jain
This document discusses several enzymes commonly used in genetic engineering. It describes the source, function, and applications of staphylococcal nuclease, shrimp DNase, S1 nuclease, mung bean endonuclease, Bal31 nuclease, exonucleases such as Exonuclease III and I, lambda exonuclease, T7 gene 6 exonuclease, ribonucleases including RNase A, H, and T1, phosphodiesterase I, β-agarase, uracil DNA glycosylase, proteinase K, topoisomerases I and II, and lysozyme. These enzymes are employed for tasks like DNA and RNA digestion, modification of DNA ends, cDNA
Potato Virus Y (PVY) is a potyvirus that infects potatoes and causes mosaic, necrosis, leaf drop, streaking, and stunting symptoms. It is transmitted by the aphid Aphis gossypii and through grafting or sap inoculation. PVY has a single-stranded RNA genome that encodes a single polyprotein later cleaved into 10 functional proteins. It replicates within the cytoplasm of infected plant cells. Its life cycle involves penetration of the host cell, translation and processing of its polyprotein, replication of its genome, assembly of new viral particles, and cell-to-cell movement through the viral protein P3N-PIPO.
Bacillus thrungenesis (BT) is a type of bacteria which secrete a special type of toxin which can kill specific type of pest and insects.
in case of any question contact me at zain_bbt@yahoo.com
Recombinant viral vectors are genetic engineering tools commonly used for gene transfer purpose with high transfection efficiency and site specific gene insertion.
INTRODUCTION:
The first plant virus shown to have a DNA genome and the first shown to replicate by reverse transcription.
Worldwide but only causes significantly losses locally.
It is transmitted by aphids .
Type member of the Caulimovirus genus, contains 11 species and 6 possible members.
significantly impact on plant virology and plant molecular biology.
The virus is an important source of gene regulatory elements, used exclusively in the genetic manipulation of plants.
STRUCTURE:Icosachedral with a diameter of 52Â nm built from 420 capsid protein subunits.
It contains a circular double-stranded DNA molecule of about 8.0 kB .
Dna is interrupted by sitespecific discontinuties resulting from its replication by reverse transcription.
After entering the host, the single stranded nicks in the viral DNA are repaired, forming a supercoiled molecule that binds to histones.
DNA is transcriped into a full length .
Replication
Risk Factors:The Cauliflower mosaic virus promoter (CaMV 35S) is used in most transgenic crops to activate foreign genes which have been artificially inserted into the host plant. It is inserted into transgenic plants in a form which is different from that found when it is present in its natural Brassica plant hosts. This enables it to operate in a wide range of host-organism environments which would otherwise not be possible.
This document discusses the phagemid vector pBluescript, which can be used in either the positive or negative orientation. pBluescript is a phagemid vector that can be used to clone DNA fragments for sequencing, mutagenesis, protein expression or other molecular biology experiments. References for further information about pBluescript are provided.
Vectors are DNA molecules that can carry foreign DNA. There are two main types of vectors: cloning vectors are used to increase copies of cloned DNA fragments, while expression vectors are used to express foreign genes as proteins. Ideal vectors are autonomously replicating, contain antibiotic resistance markers, and have unique restriction sites. Common vector types include plasmids, which can clone fragments up to 10kb; bacterial artificial chromosomes for 35-300kb inserts; and yeast artificial chromosomes for 100-1000kb inserts. The choice of vector depends on the size of the DNA fragment to be cloned and the intended host organism.
Plant transformation vectors and their typesZahra Naz
This document summarizes a presentation on plant transformation vectors and their types. It discusses various types of vectors used for plant transformation including plasmids, viruses, bacteriophages, and cosmids. Plasmids are the most commonly used vector for plant transformation. Agrobacterium-mediated transformation using tumor-inducing (Ti) plasmids is an effective method for genetically transforming plants. Viral vectors like cauliflower mosaic virus (CaMV) are also used but have certain limitations.
This document discusses methods for producing virus-free plants through meristem tip culture. It begins with a brief history of virus discovery and outlines how viruses are transmitted. It then describes various techniques used to eliminate viruses from plant tissues, including thermotherapy, meristem tip culture, chemotherapy, and cryotherapy. It emphasizes meristem tip culture, outlining the procedure and factors affecting virus eradication. It also discusses virus indexing, maintaining virus-free stocks, and the applications and limitations of these methods.
This document discusses various methods for selecting and developing cell lines for research. It covers primary culture isolation, subculture propagation to establish a cell line, control of cell proliferation through growth factors and intracellular regulators, senescence limits on cell divisions, differentiation inhibiting proliferation, and the need for continuous cell lines. Methods to immortalize cell lines include viral genes like SV40 LT and HPV E6/E7 to inactivate tumor suppressors, adenoviral and retroviral vectors, telomerase induction with hTERT, use of oncogenes, and cell hybridization. The goal is to generate stable, consistent cell lines that proliferate indefinitely while maintaining similar phenotype to the original tissue.
The document discusses the eight hallmarks of cancer identified by Hanahan and Weinberg: 1) sustaining proliferative signaling, 2) evading growth suppressors, 3) resisting cell death, 4) enabling replicative immortality, 5) inducing angiogenesis, 6) activating invasion and metastasis, 7) evading immune destruction, and 8) deregulating cellular metabolism. It provides details on the molecular mechanisms cancer cells use to acquire these hallmark capabilities, such as generating their own growth signals, inactivating tumor suppressors, increasing anti-apoptotic factors, maintaining telomeres, secreting angiogenic factors, enhancing proteases, and adapting metabolism.
Escherichia coli is a model organism widely used in genetic analysis and research. It has a small genome of 4.6 Mb contained on a single circular chromosome. It reproduces asexually through cell division but also has a sexual cycle where cells exchange DNA. E. coli was chosen as a model organism in the 1940s due to its small size, low cost of growth, and ability to produce large numbers of cells for genetic analysis. It has contributed greatly to our understanding of areas like DNA replication, transcription, translation, gene regulation, and recombinant DNA technology.
The document summarizes key information about the Ti plasmid found in Agrobacterium tumefaciens bacteria. Some key points:
1) Ti plasmid is found in A. tumefaciens, a soil bacterium that can naturally transform plant cells and cause crown gall tumors through T-DNA integration into the plant genome.
2) The Ti plasmid contains a T-DNA region flanked by left and right border sequences that is transferred to plant cells. The T-DNA contains genes encoding hormones and opines.
3) Ti plasmids can be classified based on the type of opine gene present (nopaline, octopine, agropine). Ti plasmids are
This document discusses the Cauliflower Mosaic Virus (CaMV) and its potential use for gene transfer in plants. CaMV is a plant virus that infects brassica plants like cauliflower and turnips. It has a circular double-stranded DNA genome and is spherical in shape. The 35S promoter from CaMV is commonly used in plant transformation due to its strong constitutive expression in dicots. For gene transfer, foreign DNA can be inserted into the non-essential genes II or VII of CaMV. However, CaMV has limitations for gene transfer due to its limited insertion capacity and loss of infectivity if too many nucleotides are added.
Lectut btn-202-ppt-l4. bacteriophage lambda and m13 vectors (1)Rishabh Jain
This document describes the bacteriophages λ and M13, which are commonly used as cloning vectors. λ phage is a temperate phage that infects E. coli and has a double-stranded linear DNA genome. Its genome is organized into regions that encode proteins for the phage head, tail, and lysogeny/lysis functions. M13 is a filamentous phage with a single-stranded circular genome. Both phages can be modified and used to insert and replicate foreign DNA fragments in E. coli for cloning purposes.
This document discusses techniques for purifying viruses, specifically density gradient centrifugation and isopycnic centrifugation. Density gradient centrifugation separates particles based on their buoyant densities by layering solutions of decreasing density in a centrifuge tube, then centrifuging the virus sample on top for a short time. This allows different viruses to separate into discrete zones based on their sedimentation rates. Isopycnic centrifugation forms the density gradient during a long, high-speed centrifugation, allowing separation of particles that differ slightly in density but not size. Precipitation with ammonium sulfate or ethanol can also be used to purify viruses.
Simian virus 40 (SV40) is a DNA virus that can cause tumors in monkeys and humans, and it was first identified as a contaminant in polio vaccines in the 1960s. SV40 has been widely used as a cloning vector due to its ability to efficiently deliver genes into a variety of cells without killing the host cell or eliciting an immune response. Future research prospects for SV40 vectors include developing recombinant versions for gene transfer applications and furthering understanding of related retroviruses.
Agrobacterium tumefaciens is a soil bacterium that can transfer DNA fragments called T-DNA from its tumor-inducing (Ti) plasmid into the genome of plant cells. Scientists have harnessed this natural ability of A. tumefaciens by modifying its Ti plasmid to replace the tumor-causing genes with a gene of interest. This disarmed Ti plasmid, along with helper plasmids containing virulence genes, allows for the stable integration and expression of the new gene in plant cells. Common transformation methods using A. tumefaciens involve culturing plant explants like leaf disks with Agrobacteria containing the modified Ti plasmid, then regenerating transgenic plants from the transformed cells
What are an expression vector? Detailed description of plant gene structure. Plant expression vector systems are generally consists of Ri and Ti plasmids.
The other vectors which are generally used are DNA and RNA viruses.
The document provides an introduction to bioinformatics and describes the Bangalore University syllabus for the BTH - 205: Bioinformatics course. It includes 5 units that cover topics such as introduction to computers, computer networks and programming languages, databases, biological databases, and protein structure prediction. The course aims to teach students key concepts and tools in bioinformatics.
1. Bovine papillomavirus (BPV) vectors utilize the circular, double-stranded DNA genome of BPV. The BPV genome contains early and late regions and can transform cells without integrating.
2. There are three main types of BPV vectors. All contain the transforming 69% fragment of BPV and bacterial sequences. One type inserts a gene of interest, another adds a stimulating gene, and the third uses the full BPV genome.
3. Transformation efficiency is highest with the full BPV genome due to an enhancer in the non-transforming region. Stimulating genes can replace this enhancer's function when parts of the genome are removed. BPV vectors provide amplified
This document summarizes Agrobacterium-mediated plant transformation. It describes how the soil bacterium Agrobacterium tumefaciens causes crown gall disease in plants by transferring oncogenic T-DNA from its Ti plasmid into the plant genome. Scientists have exploited this natural process to develop transformation systems where they insert new genes between the border sequences of disarmed Ti plasmids, allowing transfer of the recombinant T-DNA into plant cells. While effective in dicots, transformation of monocots proved more difficult due to their limited regeneration ability, though biolistic methods using microprojectile bombardment have succeeded in some important crop species.
Lectut btn-202-ppt-l11. enzymes used in genetic engineering-iiRishabh Jain
This document discusses several enzymes commonly used in genetic engineering. It describes the source, function, and applications of staphylococcal nuclease, shrimp DNase, S1 nuclease, mung bean endonuclease, Bal31 nuclease, exonucleases such as Exonuclease III and I, lambda exonuclease, T7 gene 6 exonuclease, ribonucleases including RNase A, H, and T1, phosphodiesterase I, β-agarase, uracil DNA glycosylase, proteinase K, topoisomerases I and II, and lysozyme. These enzymes are employed for tasks like DNA and RNA digestion, modification of DNA ends, cDNA
Potato Virus Y (PVY) is a potyvirus that infects potatoes and causes mosaic, necrosis, leaf drop, streaking, and stunting symptoms. It is transmitted by the aphid Aphis gossypii and through grafting or sap inoculation. PVY has a single-stranded RNA genome that encodes a single polyprotein later cleaved into 10 functional proteins. It replicates within the cytoplasm of infected plant cells. Its life cycle involves penetration of the host cell, translation and processing of its polyprotein, replication of its genome, assembly of new viral particles, and cell-to-cell movement through the viral protein P3N-PIPO.
Bacillus thrungenesis (BT) is a type of bacteria which secrete a special type of toxin which can kill specific type of pest and insects.
in case of any question contact me at zain_bbt@yahoo.com
Recombinant viral vectors are genetic engineering tools commonly used for gene transfer purpose with high transfection efficiency and site specific gene insertion.
INTRODUCTION:
The first plant virus shown to have a DNA genome and the first shown to replicate by reverse transcription.
Worldwide but only causes significantly losses locally.
It is transmitted by aphids .
Type member of the Caulimovirus genus, contains 11 species and 6 possible members.
significantly impact on plant virology and plant molecular biology.
The virus is an important source of gene regulatory elements, used exclusively in the genetic manipulation of plants.
STRUCTURE:Icosachedral with a diameter of 52Â nm built from 420 capsid protein subunits.
It contains a circular double-stranded DNA molecule of about 8.0 kB .
Dna is interrupted by sitespecific discontinuties resulting from its replication by reverse transcription.
After entering the host, the single stranded nicks in the viral DNA are repaired, forming a supercoiled molecule that binds to histones.
DNA is transcriped into a full length .
Replication
Risk Factors:The Cauliflower mosaic virus promoter (CaMV 35S) is used in most transgenic crops to activate foreign genes which have been artificially inserted into the host plant. It is inserted into transgenic plants in a form which is different from that found when it is present in its natural Brassica plant hosts. This enables it to operate in a wide range of host-organism environments which would otherwise not be possible.
This document discusses the phagemid vector pBluescript, which can be used in either the positive or negative orientation. pBluescript is a phagemid vector that can be used to clone DNA fragments for sequencing, mutagenesis, protein expression or other molecular biology experiments. References for further information about pBluescript are provided.
Vectors are DNA molecules that can carry foreign DNA. There are two main types of vectors: cloning vectors are used to increase copies of cloned DNA fragments, while expression vectors are used to express foreign genes as proteins. Ideal vectors are autonomously replicating, contain antibiotic resistance markers, and have unique restriction sites. Common vector types include plasmids, which can clone fragments up to 10kb; bacterial artificial chromosomes for 35-300kb inserts; and yeast artificial chromosomes for 100-1000kb inserts. The choice of vector depends on the size of the DNA fragment to be cloned and the intended host organism.
Plant transformation vectors and their typesZahra Naz
This document summarizes a presentation on plant transformation vectors and their types. It discusses various types of vectors used for plant transformation including plasmids, viruses, bacteriophages, and cosmids. Plasmids are the most commonly used vector for plant transformation. Agrobacterium-mediated transformation using tumor-inducing (Ti) plasmids is an effective method for genetically transforming plants. Viral vectors like cauliflower mosaic virus (CaMV) are also used but have certain limitations.
This document discusses methods for producing virus-free plants through meristem tip culture. It begins with a brief history of virus discovery and outlines how viruses are transmitted. It then describes various techniques used to eliminate viruses from plant tissues, including thermotherapy, meristem tip culture, chemotherapy, and cryotherapy. It emphasizes meristem tip culture, outlining the procedure and factors affecting virus eradication. It also discusses virus indexing, maintaining virus-free stocks, and the applications and limitations of these methods.
This document discusses various methods for selecting and developing cell lines for research. It covers primary culture isolation, subculture propagation to establish a cell line, control of cell proliferation through growth factors and intracellular regulators, senescence limits on cell divisions, differentiation inhibiting proliferation, and the need for continuous cell lines. Methods to immortalize cell lines include viral genes like SV40 LT and HPV E6/E7 to inactivate tumor suppressors, adenoviral and retroviral vectors, telomerase induction with hTERT, use of oncogenes, and cell hybridization. The goal is to generate stable, consistent cell lines that proliferate indefinitely while maintaining similar phenotype to the original tissue.
The document discusses the eight hallmarks of cancer identified by Hanahan and Weinberg: 1) sustaining proliferative signaling, 2) evading growth suppressors, 3) resisting cell death, 4) enabling replicative immortality, 5) inducing angiogenesis, 6) activating invasion and metastasis, 7) evading immune destruction, and 8) deregulating cellular metabolism. It provides details on the molecular mechanisms cancer cells use to acquire these hallmark capabilities, such as generating their own growth signals, inactivating tumor suppressors, increasing anti-apoptotic factors, maintaining telomeres, secreting angiogenic factors, enhancing proteases, and adapting metabolism.
The document discusses the hallmarks of cancer, which are the essential biological capabilities that enable tumor growth and metastatic spread. Originally, there were six hallmarks proposed, including self-sufficiency in growth signals, evading growth suppressors, resisting cell death, unlimited replication, sustained angiogenesis, and tissue invasion/metastasis. Later, two more hallmarks were added: evading immune destruction and deregulating cellular metabolism. The document provides details on how cancer cells acquire each of these hallmark capabilities through genetic and epigenetic changes.
The document discusses the hallmarks of cancer, which are the essential biological capabilities that enable tumor growth and metastatic spread. Originally, there were six hallmarks proposed, including self-sufficiency in growth signals, evading growth suppressors, resisting cell death, unlimited replication, sustained angiogenesis, and tissue invasion/metastasis. Later, two more were added: evading immune destruction and deregulating cellular metabolism. The hallmarks describe common functional properties of cancer cells and provide a conceptual framework for understanding the biological basis of cancer.
Genetics of cancer can involve mutations in three classes of genes: proto-oncogenes that become activated oncogenes and promote uncontrolled growth; tumor suppressor genes like RB and p53 that normally inhibit cell growth but are inactivated by mutations; and mutator genes involved in DNA repair that increase mutation rates when defective. The two-hit model of cancer explains that mutations in both copies of tumor suppressor genes are required for tumor formation.
Cancer is caused by defects in cell division that result from genetic mutations. Normal cell growth becomes unregulated, as cells multiply uncontrollably and crowd out healthy tissue. If cancer cells invade surrounding areas or spread to other parts of the body through metastasis and angiogenesis, it is considered malignant. Staging and grading of tumors helps determine prognosis and appropriate treatment options like surgery, radiation, chemotherapy, or targeted therapies.
This document provides information about cancer genetics and cell biology. It defines cancer as uncontrolled cell growth and classifies tumors as benign or malignant. The main cancer types - carcinomas, sarcomas, and leukemias/lymphomas - are described based on their cell of origin. Key concepts in cancer development are discussed, including the roles of oncogenes, tumor suppressor genes, DNA repair genes, and failures in cell cycle control. Cancer results from mutations that disable normal controls on cell growth and division.
Cell synchronization helps in obtaining distinct sub population of cells representing different stages of cell cycle.It helps in collecting population wide data of cells progressing through various stages of cell cycle. Immortalization, refers to cells having capability of undergoing cell division infinitely. Immortal cells are particularly preferred in cell culture to enable long time storage and use. This presentation teaches about cell synchronization, methods of cell synchronization, cellular transformation, immortalization and mechanism of immortalization.
Malignant tumors are cancerous and can invade nearby tissues, spread to other parts of the body through the bloodstream, and form new tumors (metastasis). Benign tumors are not cancerous, do not invade tissues or spread, and can be surgically removed without threat to life. Cancer cells have characteristics like sustained growth signaling, evading growth suppression, resisting cell death, increased replication ability, inducing angiogenesis, and spreading to other areas (metastasis). These characteristics arise through genetic mutations that alter the functions of oncogenes and tumor suppressor genes.
This document discusses molecular biology concepts related to cancer, including:
1) Cells divide through proliferation and differentiation to replenish tissues, but mutations can render cells capable of uncontrolled growth (cancer).
2) A successful cancer cell must accumulate multiple mutations in genes controlling proliferation and apoptosis to evade homeostasis mechanisms.
3) Oncogenes are genes that drive cell growth when mutated or overexpressed. Common oncogenes include RAS, MYC, and others involved in signaling pathways.
4) Tumor suppressor genes normally inhibit cell growth but are inactivated in cancer, allowing uncontrolled proliferation. Understanding genetic damage causes is key to cancer prevention.
This document discusses apoptosis, cancer, and cell death. Apoptosis is programmed cell death that involves caspase activation and the dismantling of cellular proteins. Abnormalities in apoptosis can cause diseases. Cancer arises due to mutations in genes controlling cell growth. Not all mutations cause cancer due to feedback controls and immune surveillance. However, factors like radiation, chemicals, viruses, and heredity can increase mutation rates and cancer risk. Cancer cells have invasive properties that allow them to evade growth limits and spread throughout the body.
Apoptosis, or programmed cell death, is essential for development and survival. It involves the activation of enzymes that dissolve nuclear and cytoplasmic components. Dysregulation of apoptosis can lead to cancer. There are three main mechanisms by which cancer cells acquire resistance to apoptosis: 1) disruption of the balance between pro-apoptotic and anti-apoptotic proteins, 2) reduction in caspase function, and 3) impaired death receptor signaling. Mutation or inactivation of the p53 tumor suppressor gene, which regulates apoptosis, frequently occurs in cancer through various mechanisms like HPV infection, MDM2 amplification, AKT alterations, and PTEN mutations.
This document discusses in vitro transformation, which is the alteration of cells in culture that results in a continuous cell line. In vitro transformation can occur spontaneously or be induced by viruses, transfection, carcinogens, or radiation. Transformed cells exhibit immortalization, aberrant growth control, and malignancy. Immortalization involves infinite lifespan and loss of contact inhibition and density-dependent growth control. Aberrant growth control includes loss of serum dependence and anchorage independence. Malignancy is characterized by tumorigenicity, invasiveness, angiogenesis, and metastasis.
Retroviruses are RNA viruses that can cause cancer in animals and humans. They contain three main genes - gag, pol, and env - required for viral replication but not involved in cell transformation. A retrovirus can transform normal cells into cancer cells if it contains an oncogene, a gene capable of inducing cell transformation. There are two main types of oncogenes: viral oncogenes from the retrovirus itself, and cellular oncogenes which are inactive host cell genes that can become oncogenic if incorporated into the viral genome. Proto-oncogenes are normally inactive cellular genes that can also be incorporated into the viral genome to produce a highly oncogenic virus. Oncogenes cause cancer by affecting cell proliferation
This document discusses oncogenes, which are genes that can cause cancer. It defines oncogenes as genes that were originally proto-oncogenes, which are normal genes involved in cell growth that become mutated and cause uncontrolled cell division. The document covers several topics related to oncogenes, including the classes of genes involved in cancer development (proto-oncogenes, tumor suppressor genes, apoptosis genes), the mechanisms by which proto-oncogenes become activated, the properties of cancer cells, and the role of carcinogens and oncogenic retroviruses in cancer development. It also provides examples of specific oncogenes and tumor suppressor genes.
Basis of viral oncogenesis and the most common viruses causing cancer and their mechanism of causing cancer. Helpful for undergraduate and postgraduate teaching.
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3. Chapter 29, Ganong’s Review of Medical Physiology, 26th edition
4. Electrocardiogram, StatPearls - https://www.ncbi.nlm.nih.gov/books/NBK549803/
5. ECG in Medical Practice by ABM Abdullah, 4th edition
6. Chapter 3, Cardiology Explained, https://www.ncbi.nlm.nih.gov/books/NBK2214/
7. ECG Basics, http://www.nataliescasebook.com/tag/e-c-g-basics
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Cell transformation (how normal cell converted to cancerous cell)
1.
2. CELL TRANSFORMATION
Conversion of normal cells to cancerous cells
Arslan Ali
Department of microbiologyGovt.College University Faisalabad.
3. INTRODUCTION
Cell transformation is a process in which the addition of certain
malignant characteristics in cell due to alteration in genetic
material.
• induced by chemicals, carcinogens, radiations, viruses .
4. History
• In 1901 Hugo deVries first used the term mutation to describe the sudden
heritable phenotypic changes in evening primrose.
• In 1904T.H.Morgan reported white eyed drosophila in the population of red
eyed flies.
• In 1928 H.J. Muller first use x-rays to induce mutation in fruit fly
6. 1. Radiations
• UV radiation causes pyrimidine dimerization of DNA which causes deletion/ insertion of nucleotide i.e. genetic
makeup changes
• It leads to conversion of proto-oncogenes (normal genes) to oncogenes
• These oncogenes produces some malicious products which causes blockage of UV specific endonuclease
enzyme (repair enzymes).
• Due to which DNA cannot be repaired and it leads to conversion of normal cell to cancerous cell.
7. 2. MutationA. Point Mutation:
Changes in single nucleotide sequence of gene. It effects the cell in two ways:
a. Either by blocking p53 gene which is required for apoptosis.Then the cell will continue to divide
b. Or by the change of k-RAS gene to mutant KRAS.
• KRAS is a gene required for production of growth related K-RAS proteins when combine with miRNA.
• If KRAS remains hyperactive then this mutant Ras keeps signaling molecules ON , and cells continue to divide
8. b. Chromosomal Mutation
• It occurs in case of Retinoblastoma (eye cancer)
What happens?
• Retinoblastoma (Rb) is a protein that acts as a regulator in cell cycle control.
Phosphorylation of Rb release E2F that will be required for production of other proteins
that regulate the cell cycle.
• During mutation in Ch-18 then Rb mutated and transcriptional factor E2F remains
active.As a result cells continue to divide
9. c. Insertion/ WithViruses
• It occurs in case of Avian LeukosisVirus
• In it virus inserts its own gene between the normal gene
• Like there is a gene which is responsible for production of myc
protein.
• Virus inserts its own gene within it and causes modification in it.
• Myc protein has two parts: regulator and activator region.Virus
blocks the regulator region by inserting its gene due to which
myc continuously produces and causes the cells continue to
divide.
10. d) Translocation
• It occurs in case of Burkett's lymphoma
• Ch-8 contain gene sequence for ‘myc’ protein which is transcriptional factor. If ‘myc’ gene get
gain of function mutation then cells continue to divide. So Ch-8 contains tight regulator for it
• But when it is translocated to Ch-14 which has heavy IG chain then it continuously produced
along with antibodies
• Due to which cell continuously divides.
12. 1. Spontaneous immortalized cells
• The best method of achieving continuous cell lines is through
cancerous cells which resist senescence.
13. 2. Infection with transforming virus
• SV-40 virus produces largeT antigen which block the RB &
p53 genes , both controllers of cell cycle.
• It is mostly used for human fibroblasts cells
• Other viral genes includes those from HPV such as E6 & E7.
14. 3.Transfect cells with telomerase gene
• The most well known immortality gene is telomerase HTERT
• Telomerase is able to extend the DNA sequence of telomeres
thus abating the senescence process and enabling the cells to
undergo infinite cell divisions.
• Mostly used for mesenchymal stem cells.
4.Transfection with Mutant-Ras gene
15. 5. Exposure to Ionizing Radiations
• UV radiations
• X- rays
• Gamma rays
6. Exposure to chemical carcinogens
• Benzo[alpha]pyrene
• Formaldehyde
• Vinyl chloride
• Arsenic
16. 7. Hybridoma
• Normal cell fuses with cancerous cell to form hybridoma that
have the property to divide continuously and produce immortal
cell lines.
17. Examples of immortalized cells
• A549- from cancer patient lung tumor
• HeLa cells- from cervical cancer patient, Henrietta Lacks, widely
used human cell line
• BHK cells- used for transformation by treating with human
Adenovirus D, Reovirus 3 etc.
19. 1. Immortalization
• The acquisition of an infinite life span by a cell is referred to as
immortalization.
• Most of normal cells have limit life span of 20-100 generations.
• But tumor cells have infinite life span as they go on producing
continuous cell lines.
20. 2. Aberrant Growth Control
• The transformed cells or cells from tumors , grown in culture
show many aberrations with respect to growth and its control.
21. 3.Tumorogenicity
• Cell transformation is a complex process that often results in
formation of neoplastic cells.
• The cells obtained from malignant tumors are already
transformed
22. 4. Contact Inhibition
• The transformed cells loss the ability of contact inhibition as a
result monolayer do not form properly.
• This can be observed by morphological changes in disoriented
and disorganized monolayer
23. 5. Low Serum Requirement
• In general transformed cells or tumor cells have low
serum dependence than normal cells.
• This is mostly due to secretion of autocrine growth
factors by transformed cells:
CSF
TGF alpha
IL 1,2, 3
Gastrin releasing peptide
24. 6. Anchorage Independence
• There occur several changes on surface of transformed
cells.
• These include alteration in the cell surface glycoprotein &
integrin, loss of fibronectin and some transformed cells
totally lack CAMs
• It leads to decreased in cell-cell & cell-substrate adhesion.
• Such cells grow in disorganized fashion
26. 1.Screening of the anti-cancerous drugs
2.To determine the cytotoxicity
3.Production of viral drugs
4.In-vitro screening of several drugs
5.Cell fusion techniques
6.Cell based bio-assay
7.Genetic manipulation
8.Study of the effects of toxins using cell lines.