This document discusses breeding approaches for improved nutritional quality and nutraceutical properties in vegetable crops. It begins with an introduction on the importance of nutrition and nutraceuticals. It then discusses nutritional quality and colored vegetables, important nutraceuticals found in vegetables and their health benefits. Finally, it outlines breeding objectives such as enhancing productivity, developing high-yielding varieties enriched with micronutrients, and enriching nutraceutical properties in vegetables.
Its provides information about nutrition situation in India and its solution. Bio-fortification in the context of horticultural crops and its methods . Global initiatives and Future Challenges associated with bio-fortification.
Its provides information about nutrition situation in India and its solution. Bio-fortification in the context of horticultural crops and its methods . Global initiatives and Future Challenges associated with bio-fortification.
Underutilized Crops for Food and Nutritional Security: Global Scenario by Ben...apaari
Underutilized Crops for Food and Nutritional Security: Global Scenario by Benard Ngwene, Leibniz Institute, Germany - Regional Expert Consultation on Underutilized Crops for Food and Nutritional Security in Asia and the Pacific November 13-15, 2017, Bangkok
Snapmelon (Cucumis melo var. momordica Duth. and Full) is an important member of the family Cucurbitaceae, with a chromosome no. 24, which comprises of 117 genera and 825 species in warmer parts of the world (Gopalakrishnan.,2007). Snapmelon is commonly known as ‘Phoot’ which means to ‘split’. The dessert form of Cucumis melo L. is a distinct group distributed and adapted well essentially under humid tropics of South India. Snapmelon is a locally grown dessert melon in Goa and coastal Maharashtra known as ‘Chibud’, in areas of Karnataka as ‘Hibadihannu’ or ‘Phoottikai’ and in Kerala it is known as ‘Pottuvellari’. Yet in northern India large scale cultivation of ‘phoot’ is confined to the states of UP, Rajasthan, Haryana, Punjab and Bihar. In arid area like Bikaner from Rajasthan nearly 28.70 % farmers out of 37.75% vegetable growers grow snap melon as a sole crop in kharif and rabi season as well.( Meena., S.R. et al., 2009)
The use of snapmelon is extremely diverse, depending on the type of fruit. Sweet types are consumed as dessert, while non-sweet types are used as vegetableThey are good sources of vitamin C, sugars, minerals and dietary fibre. The fruit of snapmelon contains 3% carbohydrate, 0.3% protein, 0.1 % fat, 95.7 % moisture, 265 IU Vitamin A 100g-1 and 10mg Vitamin C 100g-1 (Peter and Hazra, 2012). Seed contains 12.5 to 39.1 % edible oil. Besides nuitritional factor vegetable is used as a medicine in treating burns , abrasions and coolness of the body.
India being centre of origin, snapmelon has accumulated wide range of genetic variability with respect to the fruits are size small to large, rough and smooth, either oval or cylindrical in shape with a mealy, somewhat insipid or slightly sour flesh which burst on maturity. The productivity and quality are highly variable and sometimes results in low economic returns to the growers. Fruit cracking, low shelf life and lack of transportation & storage facilities are being the most common constraints.
“Advances in breeding of guava ”
Advances breeding of Guava, breeding of guava by gangaram rana, breeding of guava in igkv, cultivation of guava, new technology of guava breeding, poly ploide breeding of guava, mutation breeding of guava
Underutilized Crops for Food and Nutritional Security: Global Scenario by Ben...apaari
Underutilized Crops for Food and Nutritional Security: Global Scenario by Benard Ngwene, Leibniz Institute, Germany - Regional Expert Consultation on Underutilized Crops for Food and Nutritional Security in Asia and the Pacific November 13-15, 2017, Bangkok
Snapmelon (Cucumis melo var. momordica Duth. and Full) is an important member of the family Cucurbitaceae, with a chromosome no. 24, which comprises of 117 genera and 825 species in warmer parts of the world (Gopalakrishnan.,2007). Snapmelon is commonly known as ‘Phoot’ which means to ‘split’. The dessert form of Cucumis melo L. is a distinct group distributed and adapted well essentially under humid tropics of South India. Snapmelon is a locally grown dessert melon in Goa and coastal Maharashtra known as ‘Chibud’, in areas of Karnataka as ‘Hibadihannu’ or ‘Phoottikai’ and in Kerala it is known as ‘Pottuvellari’. Yet in northern India large scale cultivation of ‘phoot’ is confined to the states of UP, Rajasthan, Haryana, Punjab and Bihar. In arid area like Bikaner from Rajasthan nearly 28.70 % farmers out of 37.75% vegetable growers grow snap melon as a sole crop in kharif and rabi season as well.( Meena., S.R. et al., 2009)
The use of snapmelon is extremely diverse, depending on the type of fruit. Sweet types are consumed as dessert, while non-sweet types are used as vegetableThey are good sources of vitamin C, sugars, minerals and dietary fibre. The fruit of snapmelon contains 3% carbohydrate, 0.3% protein, 0.1 % fat, 95.7 % moisture, 265 IU Vitamin A 100g-1 and 10mg Vitamin C 100g-1 (Peter and Hazra, 2012). Seed contains 12.5 to 39.1 % edible oil. Besides nuitritional factor vegetable is used as a medicine in treating burns , abrasions and coolness of the body.
India being centre of origin, snapmelon has accumulated wide range of genetic variability with respect to the fruits are size small to large, rough and smooth, either oval or cylindrical in shape with a mealy, somewhat insipid or slightly sour flesh which burst on maturity. The productivity and quality are highly variable and sometimes results in low economic returns to the growers. Fruit cracking, low shelf life and lack of transportation & storage facilities are being the most common constraints.
“Advances in breeding of guava ”
Advances breeding of Guava, breeding of guava by gangaram rana, breeding of guava in igkv, cultivation of guava, new technology of guava breeding, poly ploide breeding of guava, mutation breeding of guava
nutrition importance of pomegranate peels.pdfJYOTI PACHISIA
Sustainable eating and zero-waste cooking has always been an integral part of gastronomy globally for ages. Yes, in recent times, this concept has grabbed our attention and most people believe in the ideal usage of an ingredient not just to decrease waste production but also to enjoy its benefits to the mellowest. Moreover, even studies have found that fruit and vegetable peels are a storehouse of nutrients that delivers indispensable health incentives. One such fruit blessed with a plethora of nutrients in its peel is pomegranate or anar, which has been used extensively for various health and beauty benefits in the Ayurvedic system of medicine. The peels are dried out and pounded into a fine powder which is steeped in hot water and relished as tea or mixed with water to make a fine paste and topically applied on the skin.
Thanks to its abundance of antioxidants, vitamins, minerals, and anti-inflammatory qualities, pomegranate peels can be added to your regular diet for augmenting overall health. So, the next time when you eat a pomegranate does not throw away the peels, instead store them to prepare powder.
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Explanation and Detailed examples and its uses for nutraceuticals and functional foods with research examples. uses and health benefits are also described in detail
Diet is not all about loosing or gaining weight, its therapeutic benefits are often taken lightly by most of us. Planning of a therapeutic diet implies the ability to adopt the principal of normal nutrition to the various regimens for adequacy, correctness, economy and palatability. It requires recognition of the need for dietary supplements such as vitamin and mineral concentrates when the nature of the diet itself imposes severe restrictions, the patient's appetite is poor or absorption and utilization are impaired so that the diet cannot meet the needs of optimum nutrition.
There are several therapeutic benefits of a well balanced diet such as:
•Fuel to perform daily activities
•Nutrients for the body's cells
•Growth and repair of tissue
•Reinforcing the immune system
•Preventing chronic diseases of lifestyle
•Maintaining good mental health
•Ensuring healthy teeth and bones
Necessity of Nutraceuticals and Functional Foods in Modern Food IndustryAnu K Mathew
Functional foods are foods that have a potentially positive effect on health beyond basic nutrition. Proponents of functional foods say they promote optimal health and help reduce the risk of disease.
Unit 8 - Information and Communication Technology (Paper I).pdfThiyagu K
This slides describes the basic concepts of ICT, basics of Email, Emerging Technology and Digital Initiatives in Education. This presentations aligns with the UGC Paper I syllabus.
We all have good and bad thoughts from time to time and situation to situation. We are bombarded daily with spiraling thoughts(both negative and positive) creating all-consuming feel , making us difficult to manage with associated suffering. Good thoughts are like our Mob Signal (Positive thought) amidst noise(negative thought) in the atmosphere. Negative thoughts like noise outweigh positive thoughts. These thoughts often create unwanted confusion, trouble, stress and frustration in our mind as well as chaos in our physical world. Negative thoughts are also known as “distorted thinking”.
2024.06.01 Introducing a competency framework for languag learning materials ...Sandy Millin
http://sandymillin.wordpress.com/iateflwebinar2024
Published classroom materials form the basis of syllabuses, drive teacher professional development, and have a potentially huge influence on learners, teachers and education systems. All teachers also create their own materials, whether a few sentences on a blackboard, a highly-structured fully-realised online course, or anything in between. Despite this, the knowledge and skills needed to create effective language learning materials are rarely part of teacher training, and are mostly learnt by trial and error.
Knowledge and skills frameworks, generally called competency frameworks, for ELT teachers, trainers and managers have existed for a few years now. However, until I created one for my MA dissertation, there wasn’t one drawing together what we need to know and do to be able to effectively produce language learning materials.
This webinar will introduce you to my framework, highlighting the key competencies I identified from my research. It will also show how anybody involved in language teaching (any language, not just English!), teacher training, managing schools or developing language learning materials can benefit from using the framework.
Read| The latest issue of The Challenger is here! We are thrilled to announce that our school paper has qualified for the NATIONAL SCHOOLS PRESS CONFERENCE (NSPC) 2024. Thank you for your unwavering support and trust. Dive into the stories that made us stand out!
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This is a presentation by Dada Robert in a Your Skill Boost masterclass organised by the Excellence Foundation for South Sudan (EFSS) on Saturday, the 25th and Sunday, the 26th of May 2024.
He discussed the concept of quality improvement, emphasizing its applicability to various aspects of life, including personal, project, and program improvements. He defined quality as doing the right thing at the right time in the right way to achieve the best possible results and discussed the concept of the "gap" between what we know and what we do, and how this gap represents the areas we need to improve. He explained the scientific approach to quality improvement, which involves systematic performance analysis, testing and learning, and implementing change ideas. He also highlighted the importance of client focus and a team approach to quality improvement.
BREEDING FOR IMPROVED NUTRITION QUALITY AND NUTRACEUTICALS PROPERTIES IN VEGETABLE CROPS
1. Breeding approaches for Improved Nutritional Quality
and Nutraceutical properties in Vegetable crops
Presented By
NARAYANA SWAMY G
Ph.D. Ist Year Roll No: 11919
Division of Vegetable crops
ICAR- Indian Institute of Horticultural Research, Bengaluru-560 089
3. INTRODUCTION
About 2500 years ago, Hippocrates, the father of modern
medicine, conceptualized the relation between the use of
appropriate foods for health and their therapeutic benefits
He promulgated that ‘’let food be your medicine and medicine be
your food’’
5. The improper diet and unbalanced nutrition are the major reasons of
malnutrition of about 3 billion people in our world (Kumari M. et al., 2020).
According to global hunger index India ranks 94 among 107 countries
in 2020 with a serious issue of child wasting (IFPRI,2020)
India is home to 46.6 million stunted children which is one third of world's
total. (Global Nutrition Report, 2018).
6. Aim: Lay stress on the importance of
child nutrition and how kids can
benefit from a nourishing diet right
from birth..
8 March 2018
7. Quality improvement of
crop plants is a
significant component
in nutritional and food
security
Food
security
All people, at all
times, have physical,
social, and economic
access to sufficient,
safe and nutritious
food’ (World Food
Summit, 1996).
Consumption and
physiological uses of
adequate quantities of
safe and nutritious food
by every member of the
household to support
an active, productive
and healthy life (Sidhu
and Rao, 2010)
Nutritional
Security
Quality defined as the “degree of excellence or superiority” (Kader
et al., 1985).
Quality includes flavour, colour, shape, size, degree of damage,
nutrient levels and traits that permit greater perceived food safety or
environmental sustainability.
Nutritional value is used to provide good-balanced ratio of the
fundamental nutrients like carbohydrates, fat, protein, minerals, and
vitamin in items of food or diet.
8. Nutritional Quality of Vegetables
Nutritional quality describes the inherent biological or health value of
produce including the ratio of beneficial to harmful substances, taste,
fragrance, freshness, and shelf-life that govern consumer behaviour.
Traditional
component
Organic
Acid
Protines
Lipid &
Fatty
acids
Carbohydrate
s
Dietary
fibre
Vitamins
Vicente et al.(2009)
9. Quality attributes of Vegetables
Intrinsic quality attributes Extrinsic quality attributes
- Inherent to the product itself
- Provide stimuli to consumers and eventual
quality perceptions
Linked to the production method but
not a property of the food itself
Like pesticides, eco-and animal
friendliness, packaging materials,
processing technology.
Sensory attributes
(Classical aspects)
Flavour
Taste
Appearance
Colour
Texture
Smell
Health attributes
• Major nutrients
• Amino acids
• Vitamins
• Dietary minerals
• Antioxidants
(Influence purchasing policy of some
consumers)
Carotenoids : Lycopene, Lutein, -carotene
Polyphenolics : Flavonoids, Flavones, Anthocyanin
Glucosinolate :Sulphoraphane, Indole-3-Carbinol
Thiosulphides : Alliin, Methiin, Ethiin
Dietary fiber : Lignin, Pectin, Cellulose
Miscellaneous : Selenium, Phytosterol, Saponins
Behara et al. (2019)
Type of traits Description Examples
Morphological Appearance of
the produce
Fruit size,
shape, colour
Organoleptic Palatability of
the produce
Taste, aroma,
juiciness,
softness
Nutritional Value of the produce
for human or animal
nutrition
Protein content, oil
content, vitamin
content, mineral
content
Consumer
preference
Increases the
marketability of the
produce
Keeping quality,
storability
Various quality traits (Debnath and Guha , 2015)
10. Vegetables are bulky source of
micronutrients and their ‘compound
matrix’ is effective in supply of diverse
elements to the body
Globally, the Food and Agriculture Organization (FAO) recommends for intake of 400 g
vegetables per day in order to boost the consumption
Behera and Singh,2019
Important source of dietary
minerals and vitamins and
contribute to fight against
micronutrient malnutrition
The health benefiting
compounds act as antioxidants
in human body and play role in
homeostasis balance
They contribute functionally
active secondary metabolites
which have preventive role
against various health ailments.
Why we need to emphasis on nutritional security through vegetables?
The 5 A Day campaign is based on advice
from the World Health Organization (WHO),
which recommends eating a minimum of
400 g of fruit and vegetables a day to lower
the risk of serious health problems, such as
heart disease, stroke and some types of
cancer.
11. Red vegetables
help to fight
cancer, reduce
the risk of
diabetes and
heart disease,
improve skin
quality.
Orange and
yellow
vegetables
improve
immune
function, reduce
the risk of heart
disease,
promote eye
health
Green
vegetables boost
the immune
system, help
detoxify the
body, restore
energy and
vitality.
fight Cancer
and unwanted
inflammation,
protects cell
from damage,
boosts memory
Protect Against
certain cancers,
keep bones
strong, reduces
the risk of heart
ailment, lowers
cholesterol
Natural Pigments like chlorophyll, anthocyanin, carotenoids make vegetables colourful.
Dark and intensively coloured vegetable usually contain more chemically active
antioxident pigments than pale crops.
Eating a mix of different coloured vegetables nourish our body with a range nutritive
compounds.
Coloured Vegetables
Lycopene,
quercetin
and
Hesperidin
Chlorophyll,
fiber, lutein,
zeaxanthin,
calcium, folate,
vitamin C and
beta carotene
Lutein,
zeaxanthin,
resveratrol,
Anthocyanin,
fiber,
flavonoids
Beta-glucans
and lignans
Beta-
carotene,
zeaxanthin,
flavonoids Rai et al.( 2012)
12. Natural Nutraceuticals
Nutraceutical is a combination of the words “nutrition” and “pharmaceuticals,” are any
substance that is a food or a part of a food and provides medical or health benefits,
including the prevention and treatment of diseases.(Rai et al., 2012)
The term "Nutraceutical" was coined by Dr Stephen DE Felice in 1989.
A nutraceutical is demonstrated to have a physiological benefit or provide
protection against chronic disease through antioxidant activity (Gupta et al., 2013)
Vegetables are functional foods nutraceuticals because they provide minerals
and nutrients which are health promoting and a major source of biologically active
nutraceuticals.
Nutraceuticals: the concept
The term of “Nutraceutical” is applied
for mainly to ingredient (rather than
complete product). Finished product
referred as functional foods or
fortified foods.
13. Important nutraceuticals in plants (inner whorl) & their role in human health
(outer whorl)
Nutraceuticals
Singh et al., 2020
14. Neutraceutical properties in Vegetables
Chemical compounds Plant source Properties
Allicin (organosulfur
compound)
Garlic, onion, parsnip Antifungal; antibacterial; antioxidant; used to
treat arteriosclerosis
Apigenin Cabbage, celery, lettuce 4’,5,7-trihydroxyflavone is a flavone that is the
aglycone of several glycosides
Beta carotene Carrots, pumpkins, sweet
potatoes, winter squash,
broccoli, spinach and kale
Anti aging; anti cancerous; improve lung
function; reduce complications associated with
diabetes
Betanin Beets, chard Natural colourant used in icecreams
Capsaicin or trans-8-
methyl-N-vanillyl-5
nonenamide
Red chilli Used for pain relief topically and as a digestive
aid when taken internally; antioxidant;
antiallergic
Caffeic acids Carrot Inhibitor of the lipoxygenase enzyme that forms
leukotrienes from arachidonic acid
Tocopherol Broccoli, carrot, celery,
onion
It is a fat-soluble antioxidant that stops the
production of reactive oxygen species formed
when fat undergoes oxidation
Plant Glucosamine Lettuce, peas, cabbage Chondroitin and glucosamine are part of normal
cartilage and act as a cushion between the joints
15. Tocopherol Broccoli, carrot, celery,
onion
It is a fat-soluble antioxidant that stops the
production of reactive oxygen species formed
when fat undergoes oxidation
Plant Glucosamine Lettuce, peas, cabbage Chondroitin and glucosamine are part of normal
cartilage and act as a cushion between the joints
Luteoline Cauliflower, celery ,
sweet pepper
A carotenoid which shows eye benefits
Sulphoraphane Broccoli Used against breast cancer
Phytosterol Germinated corn Lower cholesterol absorption in the digestive
tract thereby lowering overall cholesterol level in
the bloodstream
Proanthocyanin Red cabbage, egg plant Help in urinary tract infections by inhibiting
adhesion of microorganisms like E. coli to the
urinary tract wall
Zeaxanthin Carrot , celery, kale,
lettuce
Used for eye health and in age related
mascular degeneration
Rai et al.( 2012)
16. Carotenoids- Lycopene, Lutein, β-carotene
Glucosinolate- Sulphoraphane, Indole-3-carbinol
Polyphenolics- Flavonoids, Flavones, anthocyanin
Thiosulphides- Allin, Methiin, Ethiin
Indoles: Indole-3-carbinol (I3C) and indole 3-acetonitrile (I3A)
Phytochemicals in Vegetables
Phytochemicals or phytoceuticals present in plant foods like
vegetables which neutralize harmful free radicals generated in the body
and have protective or disease preventive characteristics.
These are secondary metabolites and formed due to the enzymatic
resections of primary metabolites (amino acids, sugars, vitamins etc.)
There are over 900 phytochemicals found in foods, one serving of a
fruit or vegetable may have as many as 100 different phytochemicals
17. Breeding objectives for improved nutrition quality
To enhance productivity to meet the ever increasing food requirement of people.
Conventional breeding in conjunction with molecular biology will make it possible to
get vegetable varieties enriched with nutraceuticals and edible colors suitable for
fresh market as well as industry.
High yielding and dietary micronutrients rich variety development.
Enrichment of nutraceuticals need special attention.
Wider adaptability, rich in dietary nutrients and antioxidants.
Crop specific breeding.
Good in organoleptic scores, high portion of edible parts, high acceptance among
consumers.
Behera et al., 2019 & Singh et al., 2020
18. Crops Wild relatives/ accessions/ landraces/ varieties Nutrients
Tomato
S. pimpinellifolium, Caro Red (Rugers x S. hirsutum) Vitamin A
High pigment mutants (hp), Crimpson (og), Pusa Rohini Lycopene
Caro Rich, F-7045, VRT-35, CGT, VRT-5 Beta carotene
S. pennellii, IL12-4 Ascorbic acid
S. chilense and atroviolacium (atv) from S. cheesmaniae Anthocyanin
Chilli C. annuum var. IC: 119262(CA2), Bayadaggi kaddi Ascorbic acid
Paprika KTPL-19 Capsanthin
Cucumber Xishuangbanna gourd Beta carotene
Muskmelon Honey dew32 Ascorbic acid
Spine gourd Momordica dioca Protein
M. chochinchinenesis Lycopene
Bitter gourd DRAR-1, DVBTH-5 Beta carotene
Sweet potato Resisto, Zambezi, Chiwoko Beta carotene
Cassava UMUCASS 44, UMUCASS 45 and UMUCASS 46 Vitamin A
Broccoli Brassica villosa Glucosinolates
Natural resources rich in quality traits useful for breeding
Singh et al.,2020
24. Crop Nutrients Gene
Chilli β-carotene B; bc
Anthocyanin (Immature
fruit)
A/F
Potato Protein AmA1
β-carotene Or, Crt-B
Phytoene Dxs
Sweet potato High protein Asp-1
Anthocyanin IbMYB1
Cauliflower β-carotene Or
Anthocyanin Pr
Cabbage Anthocyanin MYB
Lettuce Folate Gch1
Iron Pfe
Ascorbate Gul oxidase
Cucumber β-carotene Ore
Singh et al. (2015)
25. Purple (Pr) gene mutation in cauliflower
confers an abnormal pattern of anthocyanin
accumulation (Chiu et al., 2010)
The Orange (Or) gene mutation in cauliflower
confers the accumulation of high levels of -
carotene in various tissues normally devoid of
carotenoids.(Lu et al., 2006)
High pigment (hp-1) mutation, known to
increase flavonoids in tomato fruits.(Sapir et al.,
2008)
26. 26
Breeding approaches for improved nutritional quality
Conventional breeding
approach:
Selection
Hybridization
Mutation
Polyploidy breeding
Soma clonal variation
Biotechnological
approach
1.Molecular Breeding:
Development
and deployment
of molecular markers
Marker Assisted
selection
QTLs associated
with quality traits
2.SNPs discovery
3.Genome sequencing
and transcriptome
analysis
4.Transgenic approach
5.RNA interference
6.Targeted genome
editing.
27. Most of the colour varieties are developed by this method
Selected on the basis of phenotypic characters
Pusa Kulfi
high lutein
Pusa asita
High anthocyanin
SELECTION
27
Pusa Rudhira
(High lycopene)
Pusa Meghali
(High β-carotene)
Pusa Vristi
(Lycopene:
405µg /100g)
Pusa Payasa
High β-Carotene)
Chinese Red
(Lycopene)
Pusa Mridula
(Lycopene)
Pusa Gulabi
(Anthocyanin)
Carotene
content
(11.27
mg%)
ESRao et
al., IIHR.
29. HYBRIDIZATION
• Crossing between two genetically dissimilar parents. It is the best method for
crop improvement in cross pollinated crops.
• Two genetically superior divergent parents are selected and crosses were made
to develop superior cultivars.
US pickling cucumber (‘Addis’) × XIS (Cucumis
sativus var. xishuangbannanesis Qi et Yuan) High β-carotene inbred line (S4),
‘EOM 402-10’, was developed. Cuevas et al., Euphytica (2010).
Pusa
Nayanajyoti
(High β-Carotene)
Pusa Vasuda
(Lycopene)
Kuroda
( β-Carotene)
Oxheart
(Lycopene+An
thocyanin)
30. Tomato (High Beta carotene)
Lycopersicon esculentum x Lycopersicon hirsutum and
Lycopersicon esculentum x Lycopersicon hirsutum f glabratum –
(Kalloo, 1988).
Tomato Caro red (Provitamin -A rich tomato variety)
Common Tomato (Solanum esculentum Mill) x Wild Tomato species,
(Solanum hirsutum Humb.). (M. L. Tomes (1958)
INTERSPECIFIC HYBRIDIZATION
Crosses were made between two different species of the same genus known as
Interspecific hybridization.
U.S. pickling cucumber lines (Cucumis sativus L. var. sativus) x
(C. sativus L. var. xishuangbannanesis Qi et Yuan- Orange-fruited
Xishuangbannan cucumber lines ) (Simon and Navazio, 1997)
31. Soma clonal variation is defined as genetic or epigenetic changes that arise in vitro between
clonal regenerants and their corresponding donor plants.
Leva et al., (2017): Encyclopedia of Applied Plant Sciences (2nd edition) 2: 468-473
Chromosomal rearrangements are an important source of this variation.
A cultivar of sweet potato ‘Scarlet’ having higher yield and disease resistance
characteristics similar to their parent but also have darker and more stable skin colour
SOMACLONAL VARIATION
(Moyer and Collins, 1983)
MUTAGENESIS
Species Mutant gene Phenotype References
Tomato r (yellow flesh) Yellow fruit colour Fray and Grierson,1993
delta Orange fruit colour Ronen et al.,1999
tangerine Orange fruit colour Isaacson et al.,2002
Beta Orange fruit colour Ronen et al.,2000
hp-1 Flavanoids Rajasree et al., 2021
Pepper y (yellow) Yellow fruit colour Lefebvre et al., 1998
c2 Yellow fruit colour Thorup et al., 2000
32. POLYPLOIDY BREEDING
Cucumis melo inbred M01-3 (2n=24) by colchicine.
Tetraploid muskmelon- rich in soluble solid, soluble sugar and
vitamin C contents (Zhang et al. 2010)
Triploid and tetraploid watermelon- increased range of lycopene
than diploid (Liu et al. 2010)
Auto-tetraploid cultivar of fenugreek- larger leaf area and larger
productivity concerning seed number, pod number than diploids
and rich in K, Na, Ca and P (Peiman Zandi et al., 2017)
Polyploids can be induced due to aberration in cell division.
This can be used to enhance nutraceuticals and colors
33. Need of biotechnological intervention for nutritional quality improvement
Crop improvement relies on modulating the genes and genomic regions
underlying key traits, either directly or indirectly
Identification of robust and tightly linked molecular markers for target
traits.
Intensification of crop improvement programmes using biotechnological
and breeding interventions had resulted in the trait discovery and release
of improved varieties
Molecular techniques are helpful in improving bioavailability of the target
compounds, their biosynthesis in plant species/tissues where these
compounds are not naturally produced, over-expression of transgenes
and removal of anti-nutritional factors.
34. Development and deployment of molecular markers
Crop Trait Marker Reference
Brassica 2-propenyl glucosinolate
content
ISSR Marker Ripley and Roslinsky.
(2005)
B. villosa High glucosinolate
content
OI12-F02 (QTL 2)
(Micro satellite marker)
Sarikamis et al. (2006)
Cauliflower â-carotene AFLP markers linked to
“Or” gene
Li and Garvin (2003)
Chinese cabbage β-carotene accumulation SCAR markers linked to
“or” gene
Zhang
et al. (2008)
Carrot β- Carotene AFLP marker linked to Y2
loci
Santos and Simon (2002)
Cucumber Endocarp carotene
content
SSR marker on LG-3 Bo et al. (2011)
Broad bean Increased protein content
and reduced fibre content
zt 2 gene specific SCAR
marker
Gutierrez et al. (2008)
Molecular markers are used to study linkage with gene responsible for high nutraceuticals and edible
colours using mapping population.
These markers enabled the development of high-density genetic maps useful for mapping of target genes
and utilize them in crop breeding.
Molecular markers are also employed for the detection of genetic variation associated with valuable
nutrient traits among cultivars in a species and facilitate the identification of appropriate parents for
molecular breeding.( Singh et al., 2020)
35. Molecular Breeding and Marker Assisted selection
Introgression of ‘Or’ gene into Indian
cauliflower leads to development of β-
carotene (8-20 ppm) rich cauliflower
variety Pusa Beta Kesari VitA-1
(Kalia et al., 2018).
Introgression of β-carotene quantity
controlling gene ‘ Ore’ in cultivated
cucumber linked to seven SSR
markers on linkage group 3
(Bo et al., 2011).
36. QTLs associated with Nutritional quality traits
The analysis of quantitative trait locus (QTL) is a statistical approach that correlates the
phenotypic measurements with the genotypic data to evaluate the genetic basis of
variations among complex traits.
In vegetables, QTLs were mostly identified for a variety of nutritional quality related trait.
QTL analysis of fruit antioxidants in tomato using L. pennellii introgression lines
detected a total of 20 QTL including five for TACW, six for ascorbic acid, and nine for
total phenolics (Rousseaux et al. ,2005)
Just et al. (2009) performed QTL analysis for pigment content on a carotenoid
biosynthesis and found that Y and Y2 loci on linkage groups 2 and 5 respectively,
control much variation for carotenoid accumulation in carrot roots.
Iorizzo et al. (2019) identified a region in chromosome 3 with co-localized QTL for all
anthocyanin pigments of the carrot root
Example
37. Crop Trait Mapping
Population
QTLs/ Genes Chromosomes References
Maskmelon
Soluable sugar
content
RIL 6 QTLs;
SSCQU8.3
8,9,10 Pereira et al.(2018)
Total carotene in
flesh
RIL 1Q; CARQU9.1 9 Pereira et al.(2018)
Orange flesh
colour
F3 CmOr gene 9 Tzuri et al .(2015)
Vitamin-C 2QTL Sinclair et al. (2004)
Tomato
Lycopene content
RIL 2 QTl (lyc7.1 ,
lyc12.1,)
7,12 Ashrafi et al. (2012)
BC1S1 8 Q 1,4,5,6,7,10,12 Chen et al.(1999)
BC3 5 Q 2,3,5,8,12 Fulton et al.(2000)
RIL 2 Q 4,11 Rousseaux et al.
(2005)
ILs 2 Q 3,6 Foolad et al.( 2000)
Phenolic content ILs 9 Q 3,5,6,7,8,9 Foolad et al.(2000)
Brinjal
Anthocyanin
- fap10.1 - De Jong et al.(2004)
F2 26 QTLs 2,5,6,8,10 Barchi et al. (2011)
Beetroot Sucrose content - 13QTL - Trebbi et al.(2005)
Carrot β-carotene & δ-
carotene
- 8QTL &4QTL - Santos and Simon
(2002)
38. SNPs discovery
The SNPs are the predominant and mostly used markers in plant genetic analysis.
The SNPs have become choice markers in modern breeding programme due to their
abundance, stability, amenability to automation, and cost effectiveness (Ganal et al.
,2009).
GBS is also in use for generating genome-wide markers have been used in mapping
QTLs in pumpkin (Zhang et al. ,2015).
Crop Quality trait Reference
Tomato fruit metabolic traits Viquez-Zamora et al. (2013)
Carrot carotenoid biosynthesis Jourdan et al. (2015)
Muskmelon fruit traits Chang et al.( 2016)
Chilli capsaicinoids Nimmakayala et al. (2016)
39. Genome sequencing :
• Whole genome sequencing serves as the basis for finding genome-
wide analysis of genetic variation
• With the advent of NGS technologies, the sequencing of complete
genome or transcriptome of a species/genotype has become
possible within a few hours
Transcriptome Sequencing:
Transcriptome sequencing, also called RNA sequencing, refers to
the sequencing of cDNA to get information about a sample’s
total RNA content at a given time in a given condition under
study. This requires the conversion of mRNA into cDNA before the
sequencing reaction.
Transcriptomic analysis has been used in a number of vegetable
crops for understanding the quality related traits.
Transcriptome sequencing is done either by first-generation
Sanger sequencing or by high throughput NGS approaches
less representatives of commercial growth condition.
40. •Transcriptomic changes occurring during the browning of fresh-
cut fruits
•11 genes from five gene families (i.e., PPO, PAL, POD, CAT, and
SOD) were identified as potentially associated with enzymatic
browning . (Zhu et al.,2017)
Luffa
cultivar
‘Fusi-3’
Pea
Spinach
•The presence of r or rb or bsg genes results into accumulation of
low level of starch and a high level of sucrose.
•Mutant alleles at three loci r , rb , and bsg affect starch and sugar
synthesis (Harrison et al.,2000).
~320,000 high-quality SNPs were identified and indicated that
Spinacia turkestanica was more closely related to the
cultivated S. oleracea than S. tetrandra (Xu et al.,2015)
41. Transgenic Approach
Genetic engineering enabled vegetable breeders to incorporate desired transgenes into
elite cultivars, thereby improving their value, nutritional quality and other health
benefits. (Singh et al., 2020)
Romer et al.( 2000)
developed
transgenic tomato
to enhance the
carotenoid content
and profile of
tomato fruit which
increase in β-
carotene content
about threefold, up
to 45% of the total
carotenoid content
in cultivar “Ailsa
Cray”
To increase the
overall protein
content of
potato
(Chakraborty et
al., 2010)
expressed the
AmA1 gene from
Amaranthus
seed albumin in
potato tubers.
The transgenic
potato lines
called “Protato”
had 48%
increased
protein content
Lettuce
expressing the
deregulated
Arabidopsis
H+/Ca2+
transporter
sCAX1 (cation
exchanger 1)
contained 25–
32% more
calcium than
controls (Park
et al., 2009)
A transgene
construct
pSG766A used
to increase
expression of
isopentenyl
transferase (key
enzyme for
cytokinin
synthesis) in
broccoli. (Chen
et al.,2009)
cyanide-free
transgenic
cultivars of
cassava can be
promising
option to
provide safe
cassava
(Siritunga and
Sayre,2003)
42. Transgenics with enhanced nutritional quality
Crops Trait Gene References
Potato Beta carotene phytoene synthase
(CrtB), phytoene desaturase (CrtI)
and lycopene betacyclase
(CrtY) from Erwinia
Diretto et al.( 2007)
Potato Vit-C and Vit-E StVTCIA and Al-HPT Bulley et al.(2011); Elizabath et
al.(2011)
Potato Ca Scaxl, Cax2b Park et al.(2005); Kim et al.( 2006)
Potato Starch ShSV, PsGTP, AfNTTI
Amylose (ssn,ssm, SBEI,SBEII)
Fernandez et al.( 2009); Zang et al.
(2008)
Potato Total protien AmA1 Chakraborty et al.(2010)
Sweet potato Increased carotenoids IbOr-Ins -
Tomato Enhanced carotenoid
content
bacterial carotenoid gene (crtI)
encoding for phytoene desaturase
-
Tomato Suppression of PG to
delay fruit ripening
Antisense construct based on
pTOM6 for polygalactronase enzyme
-
43. RNA interference in vegetables for quality traits
Crops Traits Reference
Tomato
Increasing antioxidants Niggeweg et al. (2004)
Increasing carotenoid and flavonoid content suppression of
DET1 expression
Williams et al.(2004)
Extending shelf-life by blocking the expression of ACC oxidase
gene and two ripening specific N-glycoprotein modifying
enzymes
Meli et al. (2010)
reduction in polygalacturonase activity leading to delayed fruit
ripening
Sheehy et al. (1988
Targeting ripening gene using chimeric RNAiACS construct also
resulted into delayed ripening of fruits up to 45 days (
Gupta et al., (2013)
Onion Suppression of the lachrymatory factor synthase gene Eady et al. (2008)
Carrot
Development of Dau c 1.01 and Dau c 1.02-silenced transgenic
carrot plants show reduced allergenicity
Peters et al. (2011)
reduction in storage root thickness and colour Moreno et al. (2013)
The RNA silencing is a novel gene regulatory mechanism that limits the transcript level by
either suppressing transcription (TGS) or by activating a sequence- specific RNA degradation
process (PTGS/RNA interference) (Agrawal et al., 2003)
RNAi has been successfully utilized in vegetables for improving important traits like
modifcation of plant architecture, improvement in fruit quality in terms of high β-carotene
and lycopene content, enhanced shelf life
44. Targeted genome editing
TGE facilitates targeted and stable editing of DNA using
engineered nucleases including meganucleases, ZFNs, TALENs
and CRISPR/Cas9 nucleases.
CRISPR/Cas9 has been more popular because of its ease of use
compared to other genome editing technologies (Das et al.,
2019)
CRISPR/Cas9 has shown immense potential for crop
improvement and several traits ranging from nutritional, and
others have been enhanced (Jaganathan et al., 2018)
Li et al. (2018) reported about 5.1-fold increase in lycopene
content in tomato fruit through genome editing.
Xu et al.( 2019) reported long shelf life in tomato through
genome editing.
45. Species Genome
editing tool
Targeted gene Gene function or
phenotype
Reference
Solanaum
lycopersicum
CRISPR PETALA2a (AP2a),
NON-RIPENING (NOR)
Fruit development and
ripening
Wang et al.(2019)
Solanaum
lycopersicum
CRISPR Psy1 and CrtR-b2 Carotenoid metabolism D’Ambrosio et al.(2018)
Solanaum
lycopersicum
CRISPR Carotenoid isomerase
and Psy1
Carotenoid metabolism Dahan-Meir et al.(2018)
Solanaum
lycopersicum
CRISPR SGR1, Blc, LCY-E, LCY-
B1, LCY-B2
Increased lycopene
content
Li et al.(2018)
Solanaum
lycopersicum
CRISPR SlMYB12 Pink tomato fruit color Deng et al.(2018)
Solanaum
lycopersicum
CRISPR MPK20 sugar metabolism Chen et al.(2018)
Solanaum tuberosum CRISPR BSS1 Starch biosynthesis Andersson et al.(2018)
Solanaum tuberosum CRISPR GBSS Starch quality Andersson et al. (2017).
Solanaum tuberosum CRISPR StALS1 Starch quality (Butler et al., 2016)
Solanaum tuberosum CRISPR SBE1 and StvacINV22 Sugar metabolism Ma et al.,2017
Use of CRISPR/Cas9 technology to improve quality trait
46. Potato
•To increase the overall protein content of potato
(Chakraborty et al., 2010) expressed the AmA1
gene from Amaranthus seed albumin in potato
tubers. The transgenic potato lines called
“Protato” had 48% increased protein content
Tomato
• Fruits of Arka Vikas were modified by fruit
specific expression of two transcription
factors Ros1 and Del . Avg. anthocyanin
content of transgenic fruits were 70-100
folds higher than that of the control fruits
( Maligeppagol et al.,2013)
Tomato
Biofortification of vegetable crops
•It is a process of enrichment of health beneficial dietary nutrients in crop through
conventional and molecular breeding, genetic and agronomic measures.
•Biotechnological tools have opened up the possibilities to introduce genes responsible for
the biosynthesis of micronutrients.
Transformation of tomato with the Petunia chi-a
gene encoding chalcone isomerase resulted
transgenic tomato lines produced an increase of
up to 78 fold in fruit peel flavonols, mainly due
to an accumulation of rutin (Muir Shelagh et al,
2001).
Achievements in bio-fortified
nutraceuticals in some vegetables
Crop Biofortified element /mineral/
Vitamin
Tomato Chlorogenic acid, flavonoids,
anthocyanin, stilben, Folate,
phytoene ,β- carotene ,lycopene,
provitamin A
Onion &
Broccoli
Selenium
Lettuce Iron
Carrot Calcium
Radish Selenium
Brassica
spp.
Selenium
Parulekar et al.(2019)
47.
48. •Pusa Beta Kesari 1 first biofortified variety through pure line
selection
•Contain high beta carotene (8.0 to 10.0 ppm)
•High β-carotene (14.0 mg/100g) & 27 – 29% dry matter
•Total sugars 2-2.4% and Recommended for cultivation in
Odisha (Yadav et al. ,2017)
• High anthocyanin (90mg/100g), Dry matter: 24.0-25.5% and
Starch: 19.5% Total sugar: 1.9-2.2%
• Recommended for cultivation in Odisha
•Tubers with dark orange flesh colour and
very high beta carotene
Carotene content in tubers is 466 IU/100gm
Biofortified Varieties Developed in India
50. Sl
No.
Title of the Research Article Year of
Publication
Journal Name
1 Color-related chlorophyll and
carotenoid concentrations of
Chinese kale can be altered
through CRISPR/Cas9 targeted
editing of the carotenoid isomerase
gene BoaCRTISO
Oct.,
2020
Horticulture
Research
2 Hybridization in Peppers
(Capsicum spp.) to Improve the
Volatile Composition in Fully Ripe
Fruits: The Effects of Parent
Combinations and Fruit Tissues
May
2020
Agronomy
8.60 (NAAS)
3 Enhancement of Chlorogenic
Content of the Eggplant Fruit with
Eggplant Hydroxycinnamoyl CoA-
Quinate Transferase Gene via Novel
Agroinfiltration Protocol
Nov.,
2020
Pharmacognosy
Magazine
7.31 (NAAS)
51. 2020
Objective :
The purpose of this present study was to perform targeted editing of BoaCRTISO gene
using the CRISPR/Cas9 system to change the colour and pigment concentrations of
Chinese kale
2020
Case study -1
CASE STUDY 1
Sun et al., 2020
52. Introduction
Carotenoid isomerase (CRTISO), an enzyme that acts before the
bifurcation point in the carotenoid biosynthetic pathway, is responsible
for catalyzing the conversion of lycopene precursors to lycopene(Yuan
et al.,2015)
Recently, a CRISPR/Cas9 gene editing system in Chinese kale was
established( Sun et al.,2018) and used it to demonstrate functional
differences among members of the PDS family, which are important
genes involved in the carotenoid biosynthetic pathway (Sun et al., 2019)
The present study was done to perform targeted editing of
BoaCRTISO using the CRISPR/Cas9 system to change the colour and
pigment concentrations of Chinese kale.
53. Materials and Methods
•Plasmid construction:
Target site AGG (exon 11) is PAM, CRTISO CRISPR F/R –obtained by removing AGG.
Adding 5’ end- ATTG , 3’ end-AAAC
•Agrobacterium-mediated transformation
The explants were infected with the Agrobacterium strain GV3101, co cultivated with
Agrobacterium in MS media and hygromycin B were transferred to tissue culture bottles
that contained the subculture media
•Detection of mutations
To evaluate mutations introduced into the CRISPR/ Cas9 transgenic plants, the genomic
DNA of each positive transgenic shoot was amplified using the specific primers CRTISO-
CRISPR-test-F/R
•Colour measurements
Three positions on the leaves and the bolting stems of each mutant were randomly
selected, and the L*, a*, and b* colour values were obtained
•Chlorophyll and carotenoid assays
HPLC analysis of the carotenoids and chlorophyll was carried out
•RNA extraction and qPCR expression analysis
The expression levels of genes encoding carotenoid-degrading enzymes and chlorophyll
biosynthesizing- and degrading-enzymes were calculated based on the respective
expression levels of the respective genes in WT bolting stems.
54. Result
Vector Map and Analysis of BoaCRTISO
mutations
CRISPR/Cas9-induced mutations in Chinese kale. (Target sequence-blue, PAM sequence
(NGG)-red, mutated bases-red and asterisks-spacing between bases.
WT wild-type plant, M # number of mutants, i # number of base insertions, r #
number of base replacements.
Twenty-three hygromycin-resistant plants were obtained from ~2000 explants.
The target expression cassette was transferred into 16 lines out of 23 and the transgenic
efficiency was 69.57%.
Mutation pattern and efficiency were studied(fig-a and fig-b and mutation frequency Fig C)
The biallelic mutant M1 and the homozygous mutants M3, M6, and M16 were selected for
subsequent studies.
55. Colour of crtiso mutants
Marked differences in color were
observed between the crtiso mutants and
WT plants.
The leaves and bolting stems of the four
tested mutants were yellow, with M6
being the most yellow
The variation in chromatic parameters in the leaves and bolting stems of the four mutants was
consistent
the values of L* and b* were significantly higher than those of WT plants,
while the values of a* were significantly lower.
56. Pigment concentrations of crtiso mutants
•The total carotenoid and chlorophyll concentrations in the mutants were significantly lower than
those in the WT plants
•All pigments in the M6 leaves significantly decreased by more than 20% compared with those in the
WT leaves
•The concentrations of most pigments in the leaves of M1, M3, and M16 were also significantly lower
than those in the WT leaves, although the differences in violaxanthin, β-carotene, and neoxanthin
were not significant
57. Carotenoid- and chlorophyll-related gene expression levels in crtiso mutants
•In WT plants, the expression levels of carotenoid biosynthesis-related genes in the leaves
were substantially higher than those in bolting stems.
•The genes with highest and lowest expression levels in the leaves were ZEP1 and NXS
respectively.
•The genes with the highest and lowest expression levels in the bolting stems were ZEP2 and
VDE respectively,
•After the targeted editing, the CRTISO gene expression in the leaves of the crtiso mutants
was consistently downregulated and led to reduced expression of most carotenoid
biosynthesis-related genes in the leaves and bolting stems
Expression levels of genes related to carotenoid biosynthesis and degradation
B
L
L
B
58. Expression levels of genes related to chlorophyll biosynthesis and degradation
•The expression levels of chlorophyll biosynthesis related genes in the leaves and bolting
stems of crtiso mutants were generally downregulated
•However, some chlorophyll biosynthesis-related genes were upregulated. These genes
included ALAD and ChlI in M1 leaves; ALAD, ChlI, and CS in M3 leaves; and ChlI in M6
bolting stems
ALAD in M1 leaves
ChlI in M1 leaves
59. Schematic diagram of the
results of this study.
Blue genes were down regulated
in the mutants,
Red genes were upregulated in
the mutants,
Black genes did not change
significantly in terms of their
expression.
The down arrow next to a pigment
indicates a decrease in its content.
⊥ indicates suppression.
59
The inhibition of BoaCRTISO gene
expression in the crtiso mutants
led to the downregulation of
expression levels of carotenoid and
chlorophyll biosynthesis-related
genes, as well as carotenoid and
chlorophyll contents, which led to
the yellowing of the crtiso mutants.
60. •In this study, the carotenoid isomerase gene from Chinese kale (BoaCRTISO)
was targeted and edited using the CRISPR/Cas9 system and Agrobacterium-
mediated stable transformation.
•CRISPR/Cas9 system was used to edit the BoaCRTISO gene of Chinese kale,
resulting in the production of 13 mutants of the biallelic, homozygous,
heterozygous, and chimeric types.
•BoaCRTISO was knocked down rather than knocked out in this study
•The expression level of the CCD1 gene was also significantly reduced, which
may be a response to the decrease in the expression levels of carotenoid
biosynthesis genes.
•Inhibition of CRTISO expression affected both the carotenoid and chlorophyll
pathways, leading to decreased carotenoid and chlorophyll concentrations and
creating a new yellow color of Chinese kale, with improved market prospects.
•The CRISPR/Cas9 system is therefore a promising technique for crop quality
improvement
Inference
61. CASE
STUDY 2
Peris et al., 2020
Objectives
(i) To study the inheritance of the volatile fractions in peppers.
(ii) To assess the opportunity of developing new combinations of
volatiles by hybridization.
62. Introduction
Capsicum peppers (Capsicum spp.), especially C. annuum L., are one of
the most important vegetables and spices in the world and their fruits are
used in a range of food dishes, to provide aroma and flavor.
Pungency has been largely studied, while studies on the volatile fraction are
more recent and less diverse.
More than 200 varietal types have been reported, which greatly vary in
their external traits and also in their organoleptic and functional
properties [Patel, K et al., 2016]. Among them, C. annuum is the most
economically important species and is phylogenetically related to C. chinense
and C. frutescens [Dias et al., 2019)
A diverse profile of volatiles including terpenoids, esters, alkanes, and
several aldehydes and alcohols, was found among the evaluated accessions
of chilli.
Hybridization provided higher amounts of total volatiles and a more
complex composition, particularly in the pericarp.
The present study was designed to study the inheritance of the volatile
fractions in peppers and to determine if they can be improved by breeding
strategies.
63. Materials and Methods
10 Capsicum accessions
(8 C. annuum and 2 C.
chinense),
1. Planting material
6 C. annuum × C. annuum (Intra specific hybridization) & 3 C. annuum× C. chinense (Inter
specific hybridization) hybrids between accessions.
2.Preparation of Samples and Extraction of Volatiles
10 plants/ accession, 2 samples (1 pericarp and 1 placental tissues).
Pericarp subsamples: mixing 2 g of fresh weight from the pericarp (free of placental tissues
and septa) and finely cut into 3 × 3 mm pieces and immediately transferred into a 20 mL
sealed crimp cap headspace vial. Placental subsamples: 2 g of placenta and seeds.
64. 3. Extraction of the Volatile Fraction (HS-PME)
Headspace-solid-phase microextraction (HS-SPME) was used to
isolate the volatile compounds [9,21].
SPME(divinylbenzene/carboxen/polydimethylsiloxane,
DVB/CAR/PDMS, 50/30 µm) (Supelco, Bellefonte, PA, USA) were
used to perform the extraction from the HS.
The fiber was exposed to the headspace of the sample vials for 40
min at 40 ◦C to allow adsorption of volatiles.
The fiber was thermally desorbed at 250 ◦C for 30 s in splitless
mode in the gas chromatograph injection port, using a splitless
inlet liner of 0.75 mm ID. Purge flow was maintained at 50 mL
min−1 and purge time was 1 min.
In order to ensure that there was no cross-contamination from
previous samples, the fiber was always reconditioned for 30 min at
250 ◦C in the injection port of another gas chromatograph
4. Analysis of Volatiles
Volatile fraction was analyzed by gas chromatography–
mass spectrometry (GC–MS),
65.
66. RESULTS
The highest amount of total volatile fractions and number of volatile compounds was found in
Capsicum annuum accessions Chile Arbol followed by Cayenne, Pasilla Bajio, Serrano and
Capsicum chinense accession PI 152225.
67. Individual volatiles in placental tissues were more in Serrano (Terpenoids 429.79 %), PI
152225 (Esters 341.38 % and Alkanes 583.37 %). Highest amount of volatiles in placental
tissues was found in hybrid accessions Cayenne x Serrano (2327. 611 % Intra specific
hybridization).
68. Figure 2. Heatmap hierarchical cluster analysis
of the volatiles identified in the hybrid
accessions studied (Intra and Inter specific
Hybridization), corresponding to the pericarp
(Pe) and placental (Pl) tissues. Accession and
volatile abbreviations correspond to those
indicated in Tables 1 and 2, respectively.
Figure 1. Heatmap hierarchical
cluster analysis of the volatiles
identified in the parent accessions
studied, corresponding to the
pericarp (Pe) and placental (Pl)
tissues. Accession and volatile
abbreviations correspond to those
indicated in Tables 1 and 2,
respectively.
Accumulation of Volatiles in Fruit Tissues
(Placenta and Pericarp) abundant in
accessions ‘Cayenne’, ‘Chile Serrano’ and
PI152225 and hybrid accessions i.e.
Cayenne×Serrano and Arbol×Serrano
69. Inference:
There are ample opportunities to improve the aroma-related compounds in fully ripe
Capsicum peppers by hybridization, both qualitatively and quantitatively.
Most hybrids showed more complex volatile profiles than those of their corresponding
parents as a result of the confluence of volatiles from both parent lines, with cases of
intermediate inheritance or transgressive inheritance, and also, but to a lesser
extent, to the appearance of new compounds, presumably due to genetic
complementation.
Thus, breeders can plan sets of hybrid combinations using parents with complementary
volatile fractions, and then perform final selections of those hybrids with the most
desirable flavors and aromas based on organoleptic tests.
In general, placental tissues were quantitatively richer in volatile compounds,
which is of special interest for breeding the aroma and flavor of varieties where the
whole fruit is used in culinary applications.
70. CASE STUDY 3
Kaushik et al., 2020
Objectives
To establish and standardize an efficient agroinfiltration protocol for the eggplant fruit
for enhancing Phenolics.
To determine the function of Egg plant SmHQT (eggplant hydroxycinnamoyl
CoA-quinate transferase).
Introduction
Among vegetables, phenolic acids, for example, chlorogenic acid, is present in larger
quantities in the eggplant (Solanum melongena L.). For the production of chlorogenic
acid in the eggplant hydroxycinnamoyl CoA-quinate transferase (SmHQT), is a central
enzyme that catalyzes the reaction to the chlorogenic acid production.
71. Materials and Methods
a. Construct used for the
agroinfiltration assay .
Genomic DNA-extracted-from the Fruits-
Amplified for the SmHQT
Agroinfiltration GUS bearing vector
pCAMBIA1304 Adgene
pBS+ Vector pBS+ SmHQT digested
HindIII/BamH1
Cloning pUC cloning vector
Sub cloning pBIN19 Add gene
Sub culture LB broth (5 ml) – 2 ml syringe was
injected into the Eggplant fruits at 10-15 spots
Plant material: Arka Shirish – Green colour
Brinjal variety.
In silico cis-regulating elements map and
interactome analysis
72. Results
Figure 1: Protein-protein interaction networks SmHQT
controlling high chlorogenic biosynthesis pathway in
eggplant using Arabidopsis databases. Their
interactions were analysed online using STRING
database
(https://string-db.org/) In this study, nine potential protein
interaction networks (TT4, CYP98A3, 4CL3, 4CL1, C4H, IRX4,
4CL2, LysoPL2, and CCOAMT) were identified for HQT gene.
Fig 2 comparison of
fruit slices after
following the X-Gluc
staining procedure
with the control fruit
slices are above.
Figure 3: The high performance liquid
chromatography results of agroinfiltrated
versus control fruits in three independent
fruits on different plants.
A. tumefaciens GV3101
strain was used and
transformed to, GUS
bearing vector with
SmHQT was transiently
expressed in eggplant
fruit
Agroinfiltrated fruits
Control
73. Figure 4: Differential gene
expression level (quantitative reverse
transcription polymerase chain
reaction) of six candidate genes of
the chlorogenic pathway is
represented with respect to control
plant fruit. The expression was
analysed at one day and 3 days after
infection.
Inference:
Due to the overexpression of the SmHQT gene, higher chlorogenic content was exhibited by
the eggplant fruits, which was validated by HPLC.
The chlorogenic acid content after following the agroinfiltration procedure was more two
times in the agroinfiltrated fruit.
To identify the optimal target for increasing chlorogenic pathway flux post‐SmHQT activity,
expression patterns were analyzed with qRT-PCR, and the results showed the changes in
the expression level of the other chlorogenic acid pathway genes.
Furthermore, the cis regulating elements and protein-protein interaction (PPI) analyses
supported the HPLC results.
Quantitative gene expression analysis
74. Nutritional Qualities and associated health benefits of vegetable crops is becoming
important criteria for their increase in consumers diet.
In this respect, breeding programmes for improving the content of nutrients complex
quality traits and shelf life in vegetables are becoming more important for breeders.
Molecular breeding and genetic manipulation have emerged as the two most potent
technologies which have the potential to attain quality improvement for the coming
years
Advances in NGS technology have enabled the incorporation of genomics with various
disciplines of crop breeding
The key gene or genes regulating a molecular pathway are being genetically engineered
or edited to develop phenotypically improved crop lines
Conclusion