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Expression of araBAD Operon and Ampicillin
Resistance in E. coli MC4100
Catherine Bane, Mintong Nan
Department of Biological Sciences, University of Maryland Baltimore County
Abstract
This research aims to determine the relative size
of the arabinose operon in comparison to the
entire MC4100 genome by operon fusion
methods using φMuD1. MuD1, a derivative of
φMu, has been modified by the addition of the
lac structural genes and the β-lactamase (bla)
gene, and by the removal of the lytic genes. In
this experiment, a lysate containing MuD1 was
prepared by heat-induction of strain MAL103, a
dilysogen carrying MuCts and MuD1. MC4100
cells were infected with the MuD1 lysate and
plated on MacConkey plates with either Lactose
or Arabinose in the presence of ampicillin. The
bla gene codes for ampicillin resistance, allowing
for the selection of lysogens on the lactose +
ampicillin MacConkey plates. MC4100 cells are
araD-, and thus die in the presence of arabinose.
The arabinose + ampicillin MacConkey plates
allow for the selection of arabinose resistant
lysogens. By comparing the frequency of AmpR
lysogens to the frequency of AraR lysogens, we
conclude that the arabinose operon accounts for
0.62% of the MC4100 genome.
Background
The derivative of ΦMu,
ΦMuD1has the ability to
insert anywhere within the
genome of its host, including inside of genes. The
bla gene codes for enzymes that are capable of
lysing the β-lactam ring found in many
antibiotics, like penicillins. The addition of the
bla gene to MuD1 provides antibiotic resistance.
If the phage successfully inserts into the host cell
DNA, the resulting lysogen will be resistant to the
antibiotic.
The arabinose operon contains genes encoding
enzymes needed for the breakdown of arabinose.
It contains a regulator, araC, and three
structural genes, araB, araA, and araD. araC
exerts both negative and posititve regulation by
repressing transcription of itself and activating
the structural genes, respectively..
Data and Results
.
Selection of MuD1 Lysogens:
Selection of the AraR Lysogens:
Dilution of Lysate Number of Plaques
10-5 TMTC
10-6 52
10-7 4
Titration of the Lysate:
0
20
40
60
80
100
120
140
NumberofColonies
The Number of Ampicillin Resistant
Colonies Compared to the Number
of Arabinose Resistant Colonies
AraR Lysogens
AmpR Lysogens
Lysate Titer= 5.2 X 108 pfu/mL
Frequency of lysogeny to ampicillin resistance: 7.44 X 10-4
AmpR lysogens/ pfu
Frequency of lysogeny to arabinose resistance: 4.62 X 10-6
AraR lysogens/ pfu
Conclusions
The frequency of lysogeny to AmpR is much
higher than the frequency of lysogeny to AraR.
• The calculated ratio is 161:1, meaning that the
arabinose operon covers 0.62% of the MC4100
genome.
• Since the arabinose operon is comprised of four
genes, we can estimate that there are
approximately 644 genes in the entire MC4100
genome.
Our patched AraR colonies tell us the exact
location of the MuD1 insertion:
• I.
• III.
Using the percentage of red colonies from the
selection of MuD1 lysogens, we found that
approximately 10.8% of the MC4100 genome is
transcribed on the MacConkey Medium. This
number was calculated by doubling the red
colony percentage since MuD1 could be
orientated either towards or away from the
promoter.
Discussion
It seems unlikely to us that the entire E. coli
MC4100 genome contains only 644 genes, and
that 4 of the 644 are involved in the metabolism
of arabinose. The Mu genome contains 55 genes,
it is 8.5% the size of the MC4100 genome. It is
obvious to us that this experiment needs to be
repeated many times to ensure accuracy in the
data and its interpretations.
Ratio of AraR lysogens/pfu: AmpR lysogens/pfu = 1: 161
# of Patches Showing each
Pattern
Color of Patch
Arabinose MacConkey Lactose MacConkey Arabinose + Lactose MacConkey
I.4 White White White
II. 0 White White Red
III. 1 White Red Red
LacZ LacZ
LacZ
Patched AraR Colonies on Three Different Media:
Acknowledgements and
References
We thank Dr. Steven Caruso for his laboratory assistance and
expertise.
Caruso, S.M., et al. 2014. Genetics Lab Manual: BIOL 302L Spring 2014. University of Maryland,
Baltimore County. pp. 55-59.
Morgan, Gregory J., Graham F. Hatfull, Sherwood Casjens, and Roger W. Hendrix. "Bacteriophage Mu
Genome Sequence: Analysis and Comparison with Mu-like Prophages in Haemophilus, Neisseria and
Deinococcus." Journal of Molecular Biology 317.3 (2002): 337-59.

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BIOL302L Poster(1)

  • 1. Expression of araBAD Operon and Ampicillin Resistance in E. coli MC4100 Catherine Bane, Mintong Nan Department of Biological Sciences, University of Maryland Baltimore County Abstract This research aims to determine the relative size of the arabinose operon in comparison to the entire MC4100 genome by operon fusion methods using φMuD1. MuD1, a derivative of φMu, has been modified by the addition of the lac structural genes and the β-lactamase (bla) gene, and by the removal of the lytic genes. In this experiment, a lysate containing MuD1 was prepared by heat-induction of strain MAL103, a dilysogen carrying MuCts and MuD1. MC4100 cells were infected with the MuD1 lysate and plated on MacConkey plates with either Lactose or Arabinose in the presence of ampicillin. The bla gene codes for ampicillin resistance, allowing for the selection of lysogens on the lactose + ampicillin MacConkey plates. MC4100 cells are araD-, and thus die in the presence of arabinose. The arabinose + ampicillin MacConkey plates allow for the selection of arabinose resistant lysogens. By comparing the frequency of AmpR lysogens to the frequency of AraR lysogens, we conclude that the arabinose operon accounts for 0.62% of the MC4100 genome. Background The derivative of ΦMu, ΦMuD1has the ability to insert anywhere within the genome of its host, including inside of genes. The bla gene codes for enzymes that are capable of lysing the β-lactam ring found in many antibiotics, like penicillins. The addition of the bla gene to MuD1 provides antibiotic resistance. If the phage successfully inserts into the host cell DNA, the resulting lysogen will be resistant to the antibiotic. The arabinose operon contains genes encoding enzymes needed for the breakdown of arabinose. It contains a regulator, araC, and three structural genes, araB, araA, and araD. araC exerts both negative and posititve regulation by repressing transcription of itself and activating the structural genes, respectively.. Data and Results . Selection of MuD1 Lysogens: Selection of the AraR Lysogens: Dilution of Lysate Number of Plaques 10-5 TMTC 10-6 52 10-7 4 Titration of the Lysate: 0 20 40 60 80 100 120 140 NumberofColonies The Number of Ampicillin Resistant Colonies Compared to the Number of Arabinose Resistant Colonies AraR Lysogens AmpR Lysogens Lysate Titer= 5.2 X 108 pfu/mL Frequency of lysogeny to ampicillin resistance: 7.44 X 10-4 AmpR lysogens/ pfu Frequency of lysogeny to arabinose resistance: 4.62 X 10-6 AraR lysogens/ pfu Conclusions The frequency of lysogeny to AmpR is much higher than the frequency of lysogeny to AraR. • The calculated ratio is 161:1, meaning that the arabinose operon covers 0.62% of the MC4100 genome. • Since the arabinose operon is comprised of four genes, we can estimate that there are approximately 644 genes in the entire MC4100 genome. Our patched AraR colonies tell us the exact location of the MuD1 insertion: • I. • III. Using the percentage of red colonies from the selection of MuD1 lysogens, we found that approximately 10.8% of the MC4100 genome is transcribed on the MacConkey Medium. This number was calculated by doubling the red colony percentage since MuD1 could be orientated either towards or away from the promoter. Discussion It seems unlikely to us that the entire E. coli MC4100 genome contains only 644 genes, and that 4 of the 644 are involved in the metabolism of arabinose. The Mu genome contains 55 genes, it is 8.5% the size of the MC4100 genome. It is obvious to us that this experiment needs to be repeated many times to ensure accuracy in the data and its interpretations. Ratio of AraR lysogens/pfu: AmpR lysogens/pfu = 1: 161 # of Patches Showing each Pattern Color of Patch Arabinose MacConkey Lactose MacConkey Arabinose + Lactose MacConkey I.4 White White White II. 0 White White Red III. 1 White Red Red LacZ LacZ LacZ Patched AraR Colonies on Three Different Media: Acknowledgements and References We thank Dr. Steven Caruso for his laboratory assistance and expertise. Caruso, S.M., et al. 2014. Genetics Lab Manual: BIOL 302L Spring 2014. University of Maryland, Baltimore County. pp. 55-59. Morgan, Gregory J., Graham F. Hatfull, Sherwood Casjens, and Roger W. Hendrix. "Bacteriophage Mu Genome Sequence: Analysis and Comparison with Mu-like Prophages in Haemophilus, Neisseria and Deinococcus." Journal of Molecular Biology 317.3 (2002): 337-59.