The process of transfer, integration and expression of transgene in the host cells is known as genetic transformation. A foreign gene (transgene) encoding the trait must be incorporated into plant cells, along with a "cassette" of extra genetic material to add a desirable trait to a crop. The cassette includes a sequence of DNA called a "promoter", which determines where and when the foreign gene is expressed in the host, and a "marker gene" which allows breeders to determine by screening or selection which plants contain the inserted gene. For example, marker genes may make plants resistant to antibiotics not used routinely (e.g., agrimycin, kanamycin) or tolerant of some herbicides.
Agrobacterium mediated gene transfer, Ti-plasmid, cloning vectors based on Ti-plasmid, advantages disadvantages regarding cloning vectors based on Ti-plasmid are major areas covered in this Presentation.
This bacterium has a large plasmid that induces tumor, and for this reason, it was named tumor-inducing (Ti) plasmid.
This is process of altering the genetic makeup of an organism using Recombinant DNA Technology.
Agrobacterium tumefaciens as a tool for genetic engineering in plantsSourabh Sharma
Agrobacterium tumefaciens is a tool for genetic engineering in plants. It is a soil bacterium that can transfer DNA fragments called T-DNA from its tumor-inducing plasmid into the genome of plant cells. The T-DNA can be modified to contain desirable genes for traits like herbicide or pest resistance. The bacterium recognizes wounded plant cells and transfers T-DNA using virulence genes. Integrated T-DNA is then expressed stably in the plant genome. Agrobacterium-mediated transformation is widely used for genetic engineering in plants due to its simplicity, efficiency and ability to transfer large DNA segments.
1) Agrobacterium tumefaciens is a soil bacterium that can transfer DNA fragments (T-DNA) from its tumor-inducing plasmid into plant cells.
2) The T-DNA is flanked by left and right border sequences and encodes genes that cause plant cells to form tumors and produce nutrients for the bacteria.
3) Upon detection of wounded plant cells, genes on the bacterial plasmid and chromosome mediate T-DNA processing and transfer into the plant cell nucleus where it integrates randomly.
Agrobacterium mediated gene transfer in plants.ICHHA PURAK
This power point presentation consist of 41 slides. Attempts have been made to illustrate how Agrobacterium behaves us natural genetic engineer. How it can infect a plant through wound and a part of DNA present on Ti plasmid is Tranferred and causes disease as crown gall in the infected plant. In second part of the presentation attempts have been made to describe how Agrobacterium can be utilized for iinsertion of desired gene into the plant,what manipulation are to be made with Agrobacterium.How infection and transfer of desired gene can be made possible.What is the role of plant tissue culture etc.
Agrobacterium is a soil-borne bacteria that can transfer DNA fragments called T-DNA from its tumor-inducing (Ti) plasmid into plant cells. This process allows for efficient gene transfer. The T-DNA contains oncogenes that cause tumor formation in plants as well as genes for opine synthesis. Virulence genes on the Ti plasmid regulate T-DNA transfer through a type IV secretion system. There are two main strategies for using Agrobacterium for plant genetic engineering - co-integration vectors, where the gene of interest is inserted into the Ti plasmid, and binary vectors, where the T-DNA and virulence genes are on separate replicons that complement each other in Agrobacterium.
Agrobacterium tumifaciens
Horizontal gene transfer
Interkingdom gene transfer
Virulence or Vir a b c d e f g genes
Crown gall disease
Regulation of vir genes
Relaxosome
Agrobacterium mediated gene transfer, Ti-plasmid, cloning vectors based on Ti-plasmid, advantages disadvantages regarding cloning vectors based on Ti-plasmid are major areas covered in this Presentation.
This bacterium has a large plasmid that induces tumor, and for this reason, it was named tumor-inducing (Ti) plasmid.
This is process of altering the genetic makeup of an organism using Recombinant DNA Technology.
Agrobacterium tumefaciens as a tool for genetic engineering in plantsSourabh Sharma
Agrobacterium tumefaciens is a tool for genetic engineering in plants. It is a soil bacterium that can transfer DNA fragments called T-DNA from its tumor-inducing plasmid into the genome of plant cells. The T-DNA can be modified to contain desirable genes for traits like herbicide or pest resistance. The bacterium recognizes wounded plant cells and transfers T-DNA using virulence genes. Integrated T-DNA is then expressed stably in the plant genome. Agrobacterium-mediated transformation is widely used for genetic engineering in plants due to its simplicity, efficiency and ability to transfer large DNA segments.
1) Agrobacterium tumefaciens is a soil bacterium that can transfer DNA fragments (T-DNA) from its tumor-inducing plasmid into plant cells.
2) The T-DNA is flanked by left and right border sequences and encodes genes that cause plant cells to form tumors and produce nutrients for the bacteria.
3) Upon detection of wounded plant cells, genes on the bacterial plasmid and chromosome mediate T-DNA processing and transfer into the plant cell nucleus where it integrates randomly.
Agrobacterium mediated gene transfer in plants.ICHHA PURAK
This power point presentation consist of 41 slides. Attempts have been made to illustrate how Agrobacterium behaves us natural genetic engineer. How it can infect a plant through wound and a part of DNA present on Ti plasmid is Tranferred and causes disease as crown gall in the infected plant. In second part of the presentation attempts have been made to describe how Agrobacterium can be utilized for iinsertion of desired gene into the plant,what manipulation are to be made with Agrobacterium.How infection and transfer of desired gene can be made possible.What is the role of plant tissue culture etc.
Agrobacterium is a soil-borne bacteria that can transfer DNA fragments called T-DNA from its tumor-inducing (Ti) plasmid into plant cells. This process allows for efficient gene transfer. The T-DNA contains oncogenes that cause tumor formation in plants as well as genes for opine synthesis. Virulence genes on the Ti plasmid regulate T-DNA transfer through a type IV secretion system. There are two main strategies for using Agrobacterium for plant genetic engineering - co-integration vectors, where the gene of interest is inserted into the Ti plasmid, and binary vectors, where the T-DNA and virulence genes are on separate replicons that complement each other in Agrobacterium.
Agrobacterium tumifaciens
Horizontal gene transfer
Interkingdom gene transfer
Virulence or Vir a b c d e f g genes
Crown gall disease
Regulation of vir genes
Relaxosome
This document summarizes the process of plant genetic transformation using Agrobacterium tumefaciens. It describes how A. tumefaciens transfers T-DNA from its Ti plasmid into plant cells, integrating the T-DNA into the plant genome and expressing genes that cause crown gall disease. The document also outlines the key steps in the process, from gene transfer to the plant cell through regeneration of a transformed whole plant and methods to detect successful transformation events. Common genes inserted into transgenic crops are also listed, including genes for herbicide and insect resistance.
1. Agrobacterium tumefaciens is a soil bacteria that causes crown gall disease in plants by transferring a segment of DNA (T-DNA) from its tumor-inducing plasmid (Ti plasmid) into the plant genome.
2. The T-DNA contains oncogenes that cause tumor formation as well as genes for producing nutrients called opines that the bacteria can use.
3. Ti plasmids are modified to create disarmed vectors for plant transformation by deleting the oncogenes from the T-DNA. Binary vectors further separate the T-DNA and virulence genes into two plasmids.
Agrobacterium tumefaciens is a soil bacterium that causes crown gall disease in plants. It transfers a segment of DNA called T-DNA from its Ti plasmid into the plant genome, enabling it to modify plant cell growth. The presentation discusses the bacterial characteristics, mechanism of T-DNA transfer, use of Agrobacterium for genetic engineering of plants through insertion of foreign genes in place of tumor-causing genes on the Ti plasmid, and the regeneration of transformed plants. While it is an effective tool for plant genetic engineering, some plant species are not susceptible to Agrobacterium infection.
What are an expression vector? Detailed description of plant gene structure. Plant expression vector systems are generally consists of Ri and Ti plasmids.
The other vectors which are generally used are DNA and RNA viruses.
Introduction
Ti plasmid
Agrobacterium tumefaciens
Ti plasmid structure
Overview of infection process
Ti plasmid derived vector systems
Cointegrate vectors
Binary vectors
Agrobacterium mediated transformation of explants
Conclusions
References
Agrobacterium and plant viruses can be used as biological vectors for plant transformation. Agrobacterium mediates transformation via its tumor-inducing plasmid, using virulence genes to transfer T-DNA containing the gene of interest into the plant genome. Plant viruses can also act as gene vectors by engineering viral genomes to contain and deliver foreign genes. Retroviruses have been developed as viral vectors for animal gene transfer due to their ability to stably integrate into the host chromosome.
Agrobacterium tumefaciens is a soil bacterium that naturally transfers DNA to plant cells and causes crown gall disease. It contains a tumor-inducing plasmid (Ti plasmid) that can be engineered to transfer foreign genes of interest into plant genomes. This process, called Agrobacterium-mediated transformation, is commonly used in genetic engineering due to its high efficiency. The Ti plasmid contains T-DNA that is transferred to plant cells, along with virulence genes that facilitate transfer without being transferred themselves. Transformed plants are regenerated from cultured plant cells or tissues containing the novel genes. Agrobacterium-mediated transformation is useful for genetic engineering but has limitations such as a narrow host range and time-consuming
Agrobacterium mediated gene transfer in plantsAAMIR RAINA
1) Agrobacterium tumefaciens is a soil bacterium that causes crown gall disease in dicot plants by transferring oncogenic DNA (T-DNA) from its Ti plasmid into the plant genome.
2) The T-DNA contains genes that produce hormones causing uncontrolled cell division and the formation of tumors.
3) By removing the oncogenic genes and inserting foreign DNA between the border repeats, the Ti plasmid can be used as a vector to stably introduce foreign genes into plant genomes through the natural plant-Agrobacterium interaction and T-DNA transfer process.
The ultimate objective of modern plant breeding is to improve a top variety in one single additional character in a predictable and precise manner without disturbing the rest of the genome. Today this is being realised through examples of successful transfer of specific traits into higher plants by gene transfer.
Techniques that open up to the plant breeder the possibility of transferring in a planned manner characters from one organism to another have been developed in microbial genetics. It should be stressed right at the outset that the expression “gene” has different meanings in agriculture and in molecular biology.
Gene Transfer Methods:
The gene transfer techniques in plant genetic transformation are broadly grouped into two categories:
I. Vector-mediated gene transfer
II. Direct or vector less DNA transfer
The document summarizes how Agrobacterium tumefaciens is used for plant genetic engineering. It describes the key components of the Ti plasmid, including the T-DNA, vir genes, and opine catabolism genes. It explains that the Ti plasmid is modified by deleting tumor-causing genes and inserting a gene of interest, along with selectable markers. The modified plasmid is transferred to A. tumefaciens via triparental mating and then used to transform plant cells. Transformed cells are selected using antibiotics and regenerated into transgenic plants.
1. The document discusses Agrobacterium-mediated plant transformation using the soil bacteria Agrobacterium tumefaciens and Agrobacterium rhizogenes.
2. It describes the Ti and Ri plasmids contained in A. tumefaciens and A. rhizogenes that allow for transfer of T-DNA containing genes into plant cells.
3. The binary vector strategy is discussed as an effective method for inserting foreign genes into the T-DNA and transforming plant cells.
This document provides an overview of genetic engineering techniques used to create transgenic plants, specifically focusing on Agrobacterium-mediated transformation. It discusses what transgenic plants are, genetic engineering methods like microprojectile bombardment and electroporation, and how Agrobacterium tumefaciens is used. A. tumefaciens causes crown gall disease by transferring T-DNA from its Ti plasmid into plant cells. The Ti plasmid and vir genes control this process. Researchers have developed Ti plasmid vectors to insert foreign genes between the T-DNA borders and transfer them to plant genomes, creating transgenic plants. Selectable marker genes like NPTII allow identification of transformed cells.
This document provides an overview of various gene transformation techniques, including both vector-mediated and direct methods. It discusses natural transformation mechanisms like conjugation and transduction, as well as artificial vector-mediated techniques like Agrobacterium-mediated transformation. Direct methods like microinjection, electroporation, particle bombardment, and chemical methods using PEG or calcium phosphate are also covered. The applications, advantages, and limitations of different techniques are summarized. Overall, the document serves as an informative introduction to the key gene transfer methods used in plant biotechnology.
This document provides an overview of various gene transformation techniques, including both vector-mediated and direct methods. It discusses natural transformation mechanisms like conjugation and transduction, as well as artificial vector-mediated techniques like Agrobacterium-mediated transformation. Direct methods like microinjection, electroporation, particle bombardment, and chemical methods using PEG or calcium phosphate are also covered. The applications, advantages, and limitations of different techniques are summarized. Overall, the document serves as an informative introduction to the key gene transfer methods used in plant biotechnology.
Agrobacterium tumefaciens is commonly used to genetically modify dicot plants through its ability to transfer DNA to plant cells. It causes crown gall disease by transferring oncogenic T-DNA from its tumor-inducing plasmid into wounded plant cells. The T-DNA encodes genes that cause tumor formation and the production of opines, which the bacteria can use as nutrients. The binary vector system was developed to overcome challenges with manipulating large Ti plasmids, allowing foreign genes to be stably introduced between the T-DNA borders and transferred to plant cells. Agrobacterium-mediated transformation is now widely used to produce transgenic plants.
Agarobacterium tumefaciens based ti plasmid vectorsv gokulabalaji
This document discusses Agrobacterium tumefaciens-mediated plant transformation using Ti plasmids. Agrobacterium naturally transfers T-DNA from its tumor-inducing plasmid into plant cells, integrating it into the plant genome. Disarmed Ti plasmids were developed that remove oncogenes from the T-DNA, allowing integration of foreign DNA for plant transformation without tumor formation. Co-integrate vectors were also developed using intermediate vectors in E. coli, then mobilizing the T-DNA into Agrobacterium through triparental mating for plant transformation.
Agrobacterium tumefaciens is a soil bacterium that can transfer DNA fragments called T-DNA into plant cells. It causes crown gall disease in susceptible plants like tomatoes and sunflowers by integrating T-DNA into the plant cell's genome. During Agrobacterium-mediated gene transfer, wounded plant cells produce signal molecules that activate virulence genes in Agrobacterium, causing it to synthesize single-stranded T-DNA. The T-DNA is then transferred into the plant cell nucleus where it integrates and expresses genes that promote tumor formation. This natural process allows for stable transformation of plant cells and regeneration of whole transgenic plants.
ROLE OF Agrobacterium in plant pathology pradeep m
- Agrobacterium tumefaciens is a soil bacterium that causes crown gall disease in plants by transferring tumor-inducing (Ti) plasmid DNA to host cells.
- The Ti plasmid contains genes (vir genes) required for T-DNA processing and transfer to plant cells. A key vir gene is virE2, which encodes a single-stranded DNA binding protein.
- A study introduced the virE2 gene into Nicotiana benthamiana plants to test if it provides tolerance against Sri Lankan cassava mosaic virus (SLCMV), a geminivirus.
- Results showed that virE2 reduced SLCMV infection symptoms and spread in transgenic N. bent
APPLICATIONS OF SEQUENCE INFORMATION-STRUCTURAL,FUNCTIONAL,COMPARATIVE GENOMI...PABOLU TEJASREE
Application of genomic resources: Identification of candidate genes Apart from marker development and preparation of gene-based genetic maps, ESTs can be used for transcript profiling to identify the candidate genes for trait of interest as well as development of microarray to study differential expression of different genes at varied growth stages.
National Biodiversity protection initiatives and Convention on Biological Di...PABOLU TEJASREE
Biological Diversity Act, 2002
The Biological Diversity Act, 2002 was passed by the parliament of India to protect biodiversity
and facilitate the sustainable management of biological resources with the local communities.
The Act was enacted to meet the requirements stipulated by the United Nations Convention on
Biological Diversity (CBD), to which India is a party.
More Related Content
Similar to Agrobacterium and other methods of plant transformation including gene gun, inplanta
This document summarizes the process of plant genetic transformation using Agrobacterium tumefaciens. It describes how A. tumefaciens transfers T-DNA from its Ti plasmid into plant cells, integrating the T-DNA into the plant genome and expressing genes that cause crown gall disease. The document also outlines the key steps in the process, from gene transfer to the plant cell through regeneration of a transformed whole plant and methods to detect successful transformation events. Common genes inserted into transgenic crops are also listed, including genes for herbicide and insect resistance.
1. Agrobacterium tumefaciens is a soil bacteria that causes crown gall disease in plants by transferring a segment of DNA (T-DNA) from its tumor-inducing plasmid (Ti plasmid) into the plant genome.
2. The T-DNA contains oncogenes that cause tumor formation as well as genes for producing nutrients called opines that the bacteria can use.
3. Ti plasmids are modified to create disarmed vectors for plant transformation by deleting the oncogenes from the T-DNA. Binary vectors further separate the T-DNA and virulence genes into two plasmids.
Agrobacterium tumefaciens is a soil bacterium that causes crown gall disease in plants. It transfers a segment of DNA called T-DNA from its Ti plasmid into the plant genome, enabling it to modify plant cell growth. The presentation discusses the bacterial characteristics, mechanism of T-DNA transfer, use of Agrobacterium for genetic engineering of plants through insertion of foreign genes in place of tumor-causing genes on the Ti plasmid, and the regeneration of transformed plants. While it is an effective tool for plant genetic engineering, some plant species are not susceptible to Agrobacterium infection.
What are an expression vector? Detailed description of plant gene structure. Plant expression vector systems are generally consists of Ri and Ti plasmids.
The other vectors which are generally used are DNA and RNA viruses.
Introduction
Ti plasmid
Agrobacterium tumefaciens
Ti plasmid structure
Overview of infection process
Ti plasmid derived vector systems
Cointegrate vectors
Binary vectors
Agrobacterium mediated transformation of explants
Conclusions
References
Agrobacterium and plant viruses can be used as biological vectors for plant transformation. Agrobacterium mediates transformation via its tumor-inducing plasmid, using virulence genes to transfer T-DNA containing the gene of interest into the plant genome. Plant viruses can also act as gene vectors by engineering viral genomes to contain and deliver foreign genes. Retroviruses have been developed as viral vectors for animal gene transfer due to their ability to stably integrate into the host chromosome.
Agrobacterium tumefaciens is a soil bacterium that naturally transfers DNA to plant cells and causes crown gall disease. It contains a tumor-inducing plasmid (Ti plasmid) that can be engineered to transfer foreign genes of interest into plant genomes. This process, called Agrobacterium-mediated transformation, is commonly used in genetic engineering due to its high efficiency. The Ti plasmid contains T-DNA that is transferred to plant cells, along with virulence genes that facilitate transfer without being transferred themselves. Transformed plants are regenerated from cultured plant cells or tissues containing the novel genes. Agrobacterium-mediated transformation is useful for genetic engineering but has limitations such as a narrow host range and time-consuming
Agrobacterium mediated gene transfer in plantsAAMIR RAINA
1) Agrobacterium tumefaciens is a soil bacterium that causes crown gall disease in dicot plants by transferring oncogenic DNA (T-DNA) from its Ti plasmid into the plant genome.
2) The T-DNA contains genes that produce hormones causing uncontrolled cell division and the formation of tumors.
3) By removing the oncogenic genes and inserting foreign DNA between the border repeats, the Ti plasmid can be used as a vector to stably introduce foreign genes into plant genomes through the natural plant-Agrobacterium interaction and T-DNA transfer process.
The ultimate objective of modern plant breeding is to improve a top variety in one single additional character in a predictable and precise manner without disturbing the rest of the genome. Today this is being realised through examples of successful transfer of specific traits into higher plants by gene transfer.
Techniques that open up to the plant breeder the possibility of transferring in a planned manner characters from one organism to another have been developed in microbial genetics. It should be stressed right at the outset that the expression “gene” has different meanings in agriculture and in molecular biology.
Gene Transfer Methods:
The gene transfer techniques in plant genetic transformation are broadly grouped into two categories:
I. Vector-mediated gene transfer
II. Direct or vector less DNA transfer
The document summarizes how Agrobacterium tumefaciens is used for plant genetic engineering. It describes the key components of the Ti plasmid, including the T-DNA, vir genes, and opine catabolism genes. It explains that the Ti plasmid is modified by deleting tumor-causing genes and inserting a gene of interest, along with selectable markers. The modified plasmid is transferred to A. tumefaciens via triparental mating and then used to transform plant cells. Transformed cells are selected using antibiotics and regenerated into transgenic plants.
1. The document discusses Agrobacterium-mediated plant transformation using the soil bacteria Agrobacterium tumefaciens and Agrobacterium rhizogenes.
2. It describes the Ti and Ri plasmids contained in A. tumefaciens and A. rhizogenes that allow for transfer of T-DNA containing genes into plant cells.
3. The binary vector strategy is discussed as an effective method for inserting foreign genes into the T-DNA and transforming plant cells.
This document provides an overview of genetic engineering techniques used to create transgenic plants, specifically focusing on Agrobacterium-mediated transformation. It discusses what transgenic plants are, genetic engineering methods like microprojectile bombardment and electroporation, and how Agrobacterium tumefaciens is used. A. tumefaciens causes crown gall disease by transferring T-DNA from its Ti plasmid into plant cells. The Ti plasmid and vir genes control this process. Researchers have developed Ti plasmid vectors to insert foreign genes between the T-DNA borders and transfer them to plant genomes, creating transgenic plants. Selectable marker genes like NPTII allow identification of transformed cells.
This document provides an overview of various gene transformation techniques, including both vector-mediated and direct methods. It discusses natural transformation mechanisms like conjugation and transduction, as well as artificial vector-mediated techniques like Agrobacterium-mediated transformation. Direct methods like microinjection, electroporation, particle bombardment, and chemical methods using PEG or calcium phosphate are also covered. The applications, advantages, and limitations of different techniques are summarized. Overall, the document serves as an informative introduction to the key gene transfer methods used in plant biotechnology.
This document provides an overview of various gene transformation techniques, including both vector-mediated and direct methods. It discusses natural transformation mechanisms like conjugation and transduction, as well as artificial vector-mediated techniques like Agrobacterium-mediated transformation. Direct methods like microinjection, electroporation, particle bombardment, and chemical methods using PEG or calcium phosphate are also covered. The applications, advantages, and limitations of different techniques are summarized. Overall, the document serves as an informative introduction to the key gene transfer methods used in plant biotechnology.
Agrobacterium tumefaciens is commonly used to genetically modify dicot plants through its ability to transfer DNA to plant cells. It causes crown gall disease by transferring oncogenic T-DNA from its tumor-inducing plasmid into wounded plant cells. The T-DNA encodes genes that cause tumor formation and the production of opines, which the bacteria can use as nutrients. The binary vector system was developed to overcome challenges with manipulating large Ti plasmids, allowing foreign genes to be stably introduced between the T-DNA borders and transferred to plant cells. Agrobacterium-mediated transformation is now widely used to produce transgenic plants.
Agarobacterium tumefaciens based ti plasmid vectorsv gokulabalaji
This document discusses Agrobacterium tumefaciens-mediated plant transformation using Ti plasmids. Agrobacterium naturally transfers T-DNA from its tumor-inducing plasmid into plant cells, integrating it into the plant genome. Disarmed Ti plasmids were developed that remove oncogenes from the T-DNA, allowing integration of foreign DNA for plant transformation without tumor formation. Co-integrate vectors were also developed using intermediate vectors in E. coli, then mobilizing the T-DNA into Agrobacterium through triparental mating for plant transformation.
Agrobacterium tumefaciens is a soil bacterium that can transfer DNA fragments called T-DNA into plant cells. It causes crown gall disease in susceptible plants like tomatoes and sunflowers by integrating T-DNA into the plant cell's genome. During Agrobacterium-mediated gene transfer, wounded plant cells produce signal molecules that activate virulence genes in Agrobacterium, causing it to synthesize single-stranded T-DNA. The T-DNA is then transferred into the plant cell nucleus where it integrates and expresses genes that promote tumor formation. This natural process allows for stable transformation of plant cells and regeneration of whole transgenic plants.
ROLE OF Agrobacterium in plant pathology pradeep m
- Agrobacterium tumefaciens is a soil bacterium that causes crown gall disease in plants by transferring tumor-inducing (Ti) plasmid DNA to host cells.
- The Ti plasmid contains genes (vir genes) required for T-DNA processing and transfer to plant cells. A key vir gene is virE2, which encodes a single-stranded DNA binding protein.
- A study introduced the virE2 gene into Nicotiana benthamiana plants to test if it provides tolerance against Sri Lankan cassava mosaic virus (SLCMV), a geminivirus.
- Results showed that virE2 reduced SLCMV infection symptoms and spread in transgenic N. bent
Similar to Agrobacterium and other methods of plant transformation including gene gun, inplanta (20)
APPLICATIONS OF SEQUENCE INFORMATION-STRUCTURAL,FUNCTIONAL,COMPARATIVE GENOMI...PABOLU TEJASREE
Application of genomic resources: Identification of candidate genes Apart from marker development and preparation of gene-based genetic maps, ESTs can be used for transcript profiling to identify the candidate genes for trait of interest as well as development of microarray to study differential expression of different genes at varied growth stages.
National Biodiversity protection initiatives and Convention on Biological Di...PABOLU TEJASREE
Biological Diversity Act, 2002
The Biological Diversity Act, 2002 was passed by the parliament of India to protect biodiversity
and facilitate the sustainable management of biological resources with the local communities.
The Act was enacted to meet the requirements stipulated by the United Nations Convention on
Biological Diversity (CBD), to which India is a party.
Agrobacterium and other methods of plant transformation including gene gun, i...PABOLU TEJASREE
Genetic transformation is a powerful tool and a significant strategy for studying plant functional genomics, i.e. gene exploration, new insights into gene regulation, and the analysis of genetically regulated characteristics. Furthermore, the work of isolated genes utilizing map-based cloning of mutant alleles has been verified through functional complementation via genetic transformation. In addition, genetic engineering allows the insertion of alien genes into crop plants and the accelerated creation of new genetically modified organisms.
High-value pleiotropic genes for developing multiple stress-tolerant biofort...PABOLU TEJASREE
Modern agriculture confronts multifaceted challenges, encompassing biotic and abiotic stresses alongside malnutrition. Biofortified crops emerge as a pivotal solution, augmenting nutritional quality during plant growth. By harnessing specific genes with pleiotropic effects for stress tolerance, these crops exhibit heightened yields, resilience against pests and diseases, and adaptability to environmental stressors. This innovation not only secures food safety and nutrition but also fosters the development of "high-value farms," ensuring sustainable escalation in global food productivity and stable food prices.
Conclusion: Integrating diverse transgenes and gene editing with omics approaches enhances stress tolerance and nutritional content in biofortified crops. This holistic strategy enables precise modifications to crop genomes and comprehensive insights into stress responses and nutrient metabolism, ensuring sustainable food production and nutrition security.
cytogenomics tools and techniques and chromosome sorting.pptxPABOLU TEJASREE
1) The document discusses various cytogenomics tools and techniques for analyzing chromosomes, including molecular karyotyping, molecular combing, CO-FISH, telomere analysis using Q-FISH, parental origin determination using POD-FISH, multicolor FISH, spectral karyotyping, centromere FISH, and analysis of structural variations.
2) It also discusses techniques for isolating specific chromosomes, such as flow cytometry, laser capture microdissection, and magnetic bead capture to isolate the Y chromosome for further analysis.
3) The techniques allow for high-resolution analysis of individual chromosomes, identification of structural abnormalities, and isolation of chromosomes for developing molecular maps and locating genes.
Genomic selection (GS) is a form of marker-assisted selection that uses markers across the entire genome to estimate genomic estimated breeding values (GEBVs). GS uses a training population with known phenotypes and genotypes to construct a model and predict the performance of untested individuals based on their genotypes. The prediction accuracy is estimated from the correlation between GEBVs and measured phenotypes. GS is increasingly used in plant and animal breeding to accelerate genetic gain for complex traits. The document discusses statistical methods, field trial data, genotyping, modeling approaches, and optimization of training population size used to evaluate GS for rice breeding in Bangladesh.
QTL MAPPING AND APPROACHES IN BIPARENTAL MAPPING POPULATIONS.pptxPABOLU TEJASREE
• The loci controlling quantitative traits are called quantitative trait loci or QTL.
• Term first coined by Gelderman in 1975.
Principles of QTL mapping
• Genes and markers segregate via chromosome recombination during meiosis, thus allowing their analysis in the progeny.
• The detection of association between phenotype and genotype of markers.
• QTL analysis depends on the linkage disequilibrium.
• QTL analysis is usually undertaken in segregating mapping populations.
Key steps for the QTL mapping
• Collection of parental strains that differ for traits of interest
• Selection of molecular markers such as RFLP, SSR and SNP that distinguish between the two parents
• Development of a mapping population
• Genotyping and phenotyping of the mapping population
• Detection of QTL using a suitable statistical method
• For practical purposes, in general recombination events considered to be less than 10 recombinations per 100 meiosis, or a map distance of less than 10 centi Morgans(cM).
Patents
Patent is an exclusive ownership right granted by a country to the owner of an invention for a limited period of time, provided the invention satisfies certain conditions stipulated in the law.
Letters Patent (a kind of certificate) name of an instrument granted by the government to convey a right to the patentee. It is issued to the owner of the invention by the patent office of the country conferring this right.
Exclusivity of right implies that no one else can make, use, manufacture or market the invention without the consent of the patent holder.
A patent in the law is a property right and hence, it can be gifted, inherited, assigned, sold or licensed. The right is conferred by the State and it can be revoked by the state under very special circumstances for the benefit of public even if the patent has been sold or licensed or manufactured or marketed in the mean time. The patent right is territorial in nature i.e., a patent granted in India can only be enforced in India.
Disclosure of an invention is a legal requirement for obtaining a patent. The patentee must disclose the invention in a patent document for people to practice it after the expiry of the term of patent or after the patent has lapsed due to nonpayment of maintenance fee or practice it with the consent of the patent holder during the life of the patent.
Patent system in India
1856: The first legislation in India relating to patents was the Act VI of 1856. The objective of this legislation was to encourage inventions of new and useful manufactures and to induce inventors to disclose secret of their inventions.
1859: Fresh legislation for granting ‘exclusive privileges’ was introduced as Act XV of 1859. This legislation contained certain modifications of the earlier legislation. This Act excluded importers from the definition of inventor.
1872: “The Patents and Designs Protection Act” was enacted.
1883: The protection of invention was created
1888: The Act was consolidated as the Inventions and Design Act
1911: The Indian Patents and Designs Act was created
1972: The Patents Act, 1970 came into force on 20th April, 1972. Later amended in 1999, 2002,
2005, 2006, 2012, 2014 and 2016.
KARYOTYPING, CHROMOSOME BANDING AND CHROMOSOME PAINTING.pptxPABOLU TEJASREE
karyotype: Karyotype is the chromosome complement of an individual defined by the identifying characteristics of number and appearance of chromosomes, relative arm length, banding pattern, centromere position, secondary constriction and presence of satellite in decreasing order
Karyogram : study of a whole set of chromosomes arranged in pairs by size and position of centromere
Types of karyotypes:
Symmetric karyotype is defined as the small difference between the largest and smallest chromosome as well as more number of metacentric chromosomes in a chromosome complement.
Asymmetric karyotype is defined as the huge difference between the largest and smallest chromosome as well as less number of metacentric chromosomes in a chromosome complement
Determination of chromosome shape:
Chromosome shape can also be defined in terms of the centromeric index or the arm ratio.
The centromeric index is the length of the shorter arm divided by the total chromosome length, and thus varies from 0.5 for a truly metacentric chromosome to zero for a telocentric one.
The arm ratio is the length of the long arm divided by the length of the short arm, and thus ranges from unity for a truly metacentric chromosome to infinity for a truly telocentric chromosome.
Quantification of degree of asymmetry:
Four ratios between the sizes of smallest and longest chromosomes (1,2,3,4) and three different proportions of metacentric chromosomes (A,B,C,D) in the karyotype.
So that 12 classes of karyotypes are possible in the increasing order of asymmetry
Increased karyotype asymmetry was associated with specialised zygomorphic flowers
Ideogram: it is a schematic diagrammatic representation of a karyotype that shows all the homologous pairs of chromosomes in the nucleus.
Advantages of karyotyping:
• Reveals the structural features of each chromosome
• Helps in studying chromosome banding pattern
• Helps in identifying chromosomal aberrations
• Detection of prenatal genetic disorders
• Aids in studying evolutionary changes
Chromosome banding
Chromosome banding: When subjected to different treatments before staining, the chromosomes develop different dark and light regions in form of bands – chromosome banding.
• This is a technique for the identification of chromosomes and its structural abnormalities in the chromosome complement.
• Chromosome identification depends on their morphological characteristics such as relative length, arm ratio, presence and absence of secondary constrictions on the chromosome arms.
• It is an additional and useful tool for the identification of individual chromosome within the chromosome complement.
• It could be used for identification of chromosome segments that predominantly consist of either GC or AT rich regions or constitutive heterochromatin.
• On banded chromosome, darkly stained or brightly fluorescent transverse bands (positive bands) alternate with the lightly stained or less fluorescent (negative bands).
- The document discusses D2 analysis, a technique used to assess genetic diversity among plant genotypes.
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- An example application of D2 analysis to assess genetic diversity among litchi hybrids is described. Five clusters were identified among 18 hybrids based on quantitative traits.
This document provides an introduction to population genetics concepts including:
- What is a population and how it relates to evolution
- Key terms like gene pool, allele frequency, and genotype frequency
- Mendelian populations and how they interact
- Hardy-Weinberg equilibrium and how evolutionary forces can affect equilibrium
- Factors like mutation, migration, non-random mating, natural selection, and genetic drift that influence population genetics
The document discusses mechanisms of salinity tolerance in plants. It describes how plants can tolerate high salt concentrations through avoidance, tissue tolerance, and salt dilution. Avoidance mechanisms keep salt ions away from sensitive plant tissues through exclusion, excretion, or compartmentalization of ions. Tissue tolerance allows plants to tolerate accumulated ions through compartmentalization at the cellular and intracellular levels. Salt dilution increases plant storage volume to dilute ion concentrations. The document provides examples of plant species that exhibit different tolerance mechanisms and strategies to mitigate the effects of salinity on crops.
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The document discusses protoplast isolation and somatic hybridization. It defines somatic hybridization as the development of hybrid plants through the fusion of somatic protoplasts from different plant species or varieties. The key steps in somatic hybridization are isolating protoplasts, fusing the protoplasts from desired species, identifying and selecting hybrid cells, culturing the hybrid cells, and regenerating hybrid plants. Protoplasts can be isolated using enzymatic or mechanical methods, and their viability and ability to form cell walls can be tested. Various factors like enzyme concentration, temperature, and pH affect protoplast isolation and viability. Protoplast fusion can occur spontaneously or be induced using methods like chemical treatment, electro
Root exudates play an important role in plant nutrition by interacting with soil microbes and influencing the rhizosphere. Root exudates include primary metabolites like amino acids, carbohydrates, organic acids, and secondary metabolites like flavonoids, lignins, coumarins, and fatty acids. These exudates are released from the root tip through passive diffusion and active transport processes. They function to attract beneficial microbes, chelate nutrients, and defend against pathogens in the rhizosphere. The composition and concentration of root exudates varies depending on plant species and environmental conditions like nutrient availability.
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The cost of acquiring information by natural selectionCarl Bergstrom
This is a short talk that I gave at the Banff International Research Station workshop on Modeling and Theory in Population Biology. The idea is to try to understand how the burden of natural selection relates to the amount of information that selection puts into the genome.
It's based on the first part of this research paper:
The cost of information acquisition by natural selection
Ryan Seamus McGee, Olivia Kosterlitz, Artem Kaznatcheev, Benjamin Kerr, Carl T. Bergstrom
bioRxiv 2022.07.02.498577; doi: https://doi.org/10.1101/2022.07.02.498577
Current Ms word generated power point presentation covers major details about the micronuclei test. It's significance and assays to conduct it. It is used to detect the micronuclei formation inside the cells of nearly every multicellular organism. It's formation takes place during chromosomal sepration at metaphase.
The technology uses reclaimed CO₂ as the dyeing medium in a closed loop process. When pressurized, CO₂ becomes supercritical (SC-CO₂). In this state CO₂ has a very high solvent power, allowing the dye to dissolve easily.
Mending Clothing to Support Sustainable Fashion_CIMaR 2024.pdfSelcen Ozturkcan
Ozturkcan, S., Berndt, A., & Angelakis, A. (2024). Mending clothing to support sustainable fashion. Presented at the 31st Annual Conference by the Consortium for International Marketing Research (CIMaR), 10-13 Jun 2024, University of Gävle, Sweden.
(June 12, 2024) Webinar: Development of PET theranostics targeting the molecu...Scintica Instrumentation
Targeting Hsp90 and its pathogen Orthologs with Tethered Inhibitors as a Diagnostic and Therapeutic Strategy for cancer and infectious diseases with Dr. Timothy Haystead.
The debris of the ‘last major merger’ is dynamically youngSérgio Sacani
The Milky Way’s (MW) inner stellar halo contains an [Fe/H]-rich component with highly eccentric orbits, often referred to as the
‘last major merger.’ Hypotheses for the origin of this component include Gaia-Sausage/Enceladus (GSE), where the progenitor
collided with the MW proto-disc 8–11 Gyr ago, and the Virgo Radial Merger (VRM), where the progenitor collided with the
MW disc within the last 3 Gyr. These two scenarios make different predictions about observable structure in local phase space,
because the morphology of debris depends on how long it has had to phase mix. The recently identified phase-space folds in Gaia
DR3 have positive caustic velocities, making them fundamentally different than the phase-mixed chevrons found in simulations
at late times. Roughly 20 per cent of the stars in the prograde local stellar halo are associated with the observed caustics. Based
on a simple phase-mixing model, the observed number of caustics are consistent with a merger that occurred 1–2 Gyr ago.
We also compare the observed phase-space distribution to FIRE-2 Latte simulations of GSE-like mergers, using a quantitative
measurement of phase mixing (2D causticality). The observed local phase-space distribution best matches the simulated data
1–2 Gyr after collision, and certainly not later than 3 Gyr. This is further evidence that the progenitor of the ‘last major merger’
did not collide with the MW proto-disc at early times, as is thought for the GSE, but instead collided with the MW disc within
the last few Gyr, consistent with the body of work surrounding the VRM.
ESR spectroscopy in liquid food and beverages.pptxPRIYANKA PATEL
With increasing population, people need to rely on packaged food stuffs. Packaging of food materials requires the preservation of food. There are various methods for the treatment of food to preserve them and irradiation treatment of food is one of them. It is the most common and the most harmless method for the food preservation as it does not alter the necessary micronutrients of food materials. Although irradiated food doesn’t cause any harm to the human health but still the quality assessment of food is required to provide consumers with necessary information about the food. ESR spectroscopy is the most sophisticated way to investigate the quality of the food and the free radicals induced during the processing of the food. ESR spin trapping technique is useful for the detection of highly unstable radicals in the food. The antioxidant capability of liquid food and beverages in mainly performed by spin trapping technique.
EWOCS-I: The catalog of X-ray sources in Westerlund 1 from the Extended Weste...Sérgio Sacani
Context. With a mass exceeding several 104 M⊙ and a rich and dense population of massive stars, supermassive young star clusters
represent the most massive star-forming environment that is dominated by the feedback from massive stars and gravitational interactions
among stars.
Aims. In this paper we present the Extended Westerlund 1 and 2 Open Clusters Survey (EWOCS) project, which aims to investigate
the influence of the starburst environment on the formation of stars and planets, and on the evolution of both low and high mass stars.
The primary targets of this project are Westerlund 1 and 2, the closest supermassive star clusters to the Sun.
Methods. The project is based primarily on recent observations conducted with the Chandra and JWST observatories. Specifically,
the Chandra survey of Westerlund 1 consists of 36 new ACIS-I observations, nearly co-pointed, for a total exposure time of 1 Msec.
Additionally, we included 8 archival Chandra/ACIS-S observations. This paper presents the resulting catalog of X-ray sources within
and around Westerlund 1. Sources were detected by combining various existing methods, and photon extraction and source validation
were carried out using the ACIS-Extract software.
Results. The EWOCS X-ray catalog comprises 5963 validated sources out of the 9420 initially provided to ACIS-Extract, reaching a
photon flux threshold of approximately 2 × 10−8 photons cm−2
s
−1
. The X-ray sources exhibit a highly concentrated spatial distribution,
with 1075 sources located within the central 1 arcmin. We have successfully detected X-ray emissions from 126 out of the 166 known
massive stars of the cluster, and we have collected over 71 000 photons from the magnetar CXO J164710.20-455217.
PPT on Direct Seeded Rice presented at the three-day 'Training and Validation Workshop on Modules of Climate Smart Agriculture (CSA) Technologies in South Asia' workshop on April 22, 2024.
Agrobacterium and other methods of plant transformation including gene gun, inplanta
1. 1
ACHARYA N.G. RANGA AGRICULTURAL UNIVERSITY
S. V. AGRICULTURAL COLLEGE, TIRUPATI
COURSE NO : PP 603
COURSE TITLE : Molecular Approaches for improving physiological mechanisms
through traits introgression
TOPIC : Lecture 23: Agrobacterium and other methods of plant
transformation including gene gun, inplanta etc.
Submitted to:
Dr. A. R. Nirmal Kumar
Assistant Professor
Dept. of Crop Physiology
Submitted by:
P.Tejasree
TAD/2023-10
PhD (Ag) 1st
Year
Dept. of GPBR
2. 2
INTRODUCTION:
Conventional plant breeding uses crossing, mutagenesis, and somatic hybridization for
genome modification to improve crop traits by introducing new beneficial alleles from crossable
species. However, because of crossing barriers and linkage drag, conventional plant breeding
methods are time-consuming and require several generations of breeding and selection. To feed
the several billion people living on this planet, the main aim of breeders is to increase
agricultural production. Hence, new technologies need to be developed to accelerate breeding
through improving genotyping and phenotyping methods.
Genetic transformation is a powerful tool and a significant strategy for studying plant
functional genomics, i.e. gene exploration, new insights into gene regulation, and the analysis of
genetically regulated characteristics. Furthermore, the work of isolated genes utilizing map-based
cloning of mutant alleles has been verified through functional complementation via genetic
transformation. In addition, genetic engineering allows the insertion of alien genes into crop
plants and the accelerated creation of new genetically modified organisms.
Importance of gene transfer technologies to plants:
i. Provide resistance against viruses
ii. Acquire insecticidal resistance
iii. To strengthen the plant to grow against bacterial diseases
iv. Develop the plants to grow in drought
v. Engineering plants for nutritional quality
vi. Make the plants to grow in various seasons
vii. Herbicide resistant plant can be made
viii. Resistance against fungal pathogens
ix. Engineering of plants for abiotic stress tolerance
x. Delayed ripening can be done
Gene transfer technologies in plants
The process of transfer, integration and expression of transgene in the host cells is known
as genetic transformation. A foreign gene (transgene) encoding the trait must be incorporated
into plant cells, along with a "cassette" of extra genetic material to add a desirable trait to a crop.
The cassette includes a sequence of DNA called a "promoter", which determines where and
when the foreign gene is expressed in the host, and a "marker gene" which allows breeders to
determine by screening or selection which plants contain the inserted gene. For example, marker
genes may make plants resistant to antibiotics not used routinely (e.g., agrimycin, kanamycin) or
tolerant of some herbicides.
3. 3
Various genetic transfer techniques are grouped into two main categories.
1) Vector mediated gene transfer (Indirect method)
2) Vectorless gene transfer (Direct method)
Vector mediated gene transfer (indirect method)
Vector-mediated gene transfer is carried out either by Agrobacteriummediated
transformation or by use of plant viruses as vectors. In this approach the transgene is combined
4. 4
with a vector which takes it to the target cells for integration. The term plant gene vector applies
to potential vectors both for transfer of genetic information between plants and the transfer of
genetic information from other organisms (bacteria fungi and animals) to plants. The vector
mediated transfer is strongly linked to regeneration capabilities of the host plant. The plant gene
vectors being exploited for transfer of genes are plasmids of Agrobacterium viruses and
transposable elements
Transformation Using Agrobacterium
The Agrobacterium system was historically the first successful plant transformation
system, marking the breakthrough in plant Genetic engineering in 1983. The Agrobacterium is
naturally occurring gram negative soil bacterium with two common species A Tumifacience and
A. rhizogenes there are known as natural gene engineers for their ability to transform plants. A
tumifacience induces tubers called crown galls, whereas a rhizogenes causes hairy root diseases.
Large plasmids in these bacteria are called tumour inducing (Ti plasmid) and root inducing (Ri
plasmid) respectively. The major credit for the development of plant transformation techniques
goes to the natural unique capability of A. tumefaciens.
The Ti plasmid has two major segments of interest in transformation that is T DNA and
virus region. The T DNA region of the Ti plasmid is the part which is transferred to plant cell
and incorporated into nuclear genome of cells. The transfer of T DNA is mediated by genes in
the another region of Ti plasmid called virs genes (virulence genes). Modified Ti plasmid are
constructed that lack of undesirable Ti genes but contain a foreign gene (resistant to a disease)
and a closely linked selectable marker gene (E.g.: - for antibiotic resistance). Within the T DNA
region any gene put in T DNA region of plasmid cysts transferred to the plant genome. The T
DNA is generally integrated in low copy number per cell. Transfer of gene through to wounded
plant organs A. tumifacience has limited range of host. It can infest about 60% gymnosperms and
Angiosperm. Hence Agrobacterium mediated transformation is the method of choice in
dicotyledonous plant species, where plant regeneration system are well established, However,
Monocotyledons could not be successfully utilized for Agrobacterium mediated gene transfer.
T-DNA Insertion by Agrobacterium
a) Attachment of Agrobacterium to Plant Cells - When plant tissues are wounded, they
exude organic acids, amino acids, saccharides, and other small molecules that can invoke
chemotaxis in Agrobacterium and boost the secretion of acetylated acidic
polysaccharides. Subsequently, Agrobacterium cells adhere onto the surface of plant
cells. The attachment process in which cellulose fi bers are synthesized and secreted is
regulated by attR and cel genes in the Agrobacterium genome, resulting in solid adhesion
of the bacteria to the surface of plant cells. The attachment process of Agrobacterium is
known to be related indirectly with chvA, chvB, and pscA genes in the bacterial genome,
5. 5
as well as with arabinogalactan proteins, cellulose synthase like proteins, and cell wall
proteins in host plants.
b) Activation of Virulence ( vir ) Genes - To recognize plant cells, Agrobacterium uses a
two-way signaling system, which consists of the VirA protein and the VirG:VirA protein
pair that directly perceive phenolic compounds like acetosyringone secreted from
wounded plant cells. These compounds induce autophosphorylation of a VirA domain.
The phosphate group of the VirA is then transferred to VirG, which binds to the
enhancement elements of vir genes in the Ti-plasmid and regulates their transcription
c) T-DNA Processing and T-Strand Formation - VirD2 is a nuclear localization signal
binding protein that is covalently bound to the 5′ end of the T-strand. VirD2 recognizes
the left and right borders of T-DNA sequences, makes a nick between the third and fourth
bases of antisense T-DNA border sequences, and forms covalent bonds at the 5′ end of
single-stranded DNA to form the T-strand. The VirD1 protein can change the structure of
T-DNA, which alleviates the tension and helps to stimulate T-strand formation by VirD2.
d) Transport of T-strand and Vir Proteins and T-complex Formation - VirD2 protein
transfers the T-strand into plant cells through a VirB channel, which consists of VirB and
VirD4 proteins. The VirB channel is a filamentous pilus, which connects the
Agrobacterium and host plant cell that functions as a transporter complex through cell
membranes. VirE2, which is transferred into the cytoplasm of the infected plant cell,
combines with the single stranded T-DNA, to form a T-strand/ protein polymer called the
T-complex. The T-complex protects the T-strand from the deoxyribonucleases that exist
in the plant cytoplasm and is an ideal structure to transport the large T-strand to the
nucleus of a plant cell.
e) T-complex Transfer to a Nucleus of a Plant Cell - The T-complex is larger than the
nuclear pores in the nuclear membrane of plant cells and is transferred to the plant
nucleus by active transport. VirE2, which surrounds the T-complex, and plant derived
importin-α proteins, which specifically recognize nuclear localization sequences (NLS) in
the VirD2 protein play important roles in the active transport. In Arabidopsis thaliana ,
VirD2 has been shown to conjugate specifically with NLS of AtKAPα, a member of the
karyopherin-α family, and is then transferred to the plant nucleus. VirE2 is essential for
T-DNA transport into the plant cell nucleus. VirE2 does not combine with AtKAPα, but
with the plant-derived proteins, VIP1 (VirE2 interacting protein) and VIP2, then its
transfer to the nucleus is mediated by karyopherin-α. The over-expression of the VIP1
gene particularly increases the import of T-DNA to the nucleus, and as a result the
transformation efficiency is correspondingly enhanced.
f) Insertion of T-DNA into Plant Genomes - VirE2 is not involved in insertion of T-DNA,
but it is needed to protect the T-DNA from plant deoxyribonucleases. VirE2 secures the
integrity of the T-DNA during its transportation from the cytoplasm to the nucleus, and
regulates its integration into the plant chromosome. Before the T-DNA is inserted into the
plant chromosome, the VirE2 surrounding the T-strand has to be removed. VirF is a defi
6. 6
ning factor of host-specifi city in Agrobacterium . It functions as an F-box protein and
shows target protein specifi city in the proteolysis related Skp1p–cullin–F-box protein
(SCF) complex. When transferred into pcells, VirF was found to be involved in the
proteolysis of VirE2 and VIP1 in the nucleus. VirD2 is known to be related to the precise
insertion of T-DNA into plant genomes. Because T-DNA insertion into plant genomes is
an illegitimate recombination, the host DNA repair and recombination-related genes are
expected to influence the insertion of the T-DNA.
In general, most of the Agrobacterium-mediated plant transformations have the following basic
protocol:
1. Development of Agrobacterium carrying the co-integrate or binary vector with the
desired gene
2. Identification of a suitable explant e.g. cells, protoplasts, tissues, calluses, organs
3. Co-culture of explants with Agrobacterium
4. Killing of Agrobacterium with a suitable antibiotic without harming the plant tissue
5. Selection of transformed plant cells
6. Regeneration of whole plants
7. 7
Advantages:
i. It is a natural means of gene transfer
ii. Agrobacterium is capable of infecting plant cells and tissue and organs
iii. Agrobacterium is capable of transfer of large fragments of DNA very efficiently
iv. Integration of T DNA is a relative precise process
v. The stability of gene transferred in excellent
vi. Transformed plants can be regenerated effectively
Limitations:
i. Host specificity: There is a limitation of host plants for Agrobacterium, since many
crop plants (monocotyledons e.g. cereals) are not infected by it. In recent years,
virulent strains of Agrobacterium that can infect a wide range of plants have been
developed
8. 8
ii. Inability to transfer multiple genes: The cells that regenerate more efficiently are
often difficult to transform, e.g. embryonic cells lie in deep layers which are not easy
targets for Agrobacterium
iii. Somaclonal variation
iv. Slow regeneration
In planta transformation
The in planta method of transformation is a new and efficient method of Agrobacterium-
mediated transformation that skips the need for the tissue culture-based regeneration of
transgenics. In this method, Agrobacterium with the required transgene is allowed to infect the
meristematic tissue of the plant directly, eliminating the intervening tissue culture steps. This is a
cost-effective, fast, and very efficient method compared to tissue culture-based transformation
and can open new gates for recalcitrant species. The first successful in planta transformation was
reported in Arabidopsis thaliana, with improved transformation when the plant was inoculated at
the flowering stage called the floral dip method
In planta transformation: a general scenario
In planta refers to the direct transformation of the plant without involving any tissue
culture step. In planta transformation is more efficient while also being less cumbersome and
time-consuming than the callus regeneration method. This can be useful for those plants, which
lack tissue culture and regeneration systems. In different crops, different types of explants were
used such as mature seeds, embryos, inflorescence, embryogenic apical meristem, spikelet, and
roots.
Comparative methodology of callus-based and in planta-based transformation methods
suggesting the approximate investment of days in these methods
9. 9
Methods for in planta transformation
In planta transformation involves the direct transfer of T-DNA to the plant genome, and
this can be achieved in various ways such as the floral dip method, the floral drop method, and
mechanical injury to the seed meristem . These methods are described in the following.
1. Vacuum infiltration method
The first attempt at the in planta transformation of A. thaliana through vacuum
infiltration was done in 1993 by Nicole Bechtold and coworkers. The whole Arabidopsis
plant was uprooted and immersed in an Agrobacterium suspension in a vacuum chamber,
and infiltration was allowed. After vacuum infiltration, the plant was potted and allowed
to grow back normally until seeding. Seeds were germinated on a selection medium for
the selection of transformed plants. This method was reported to give a 0.35%
transformation efficiency. It was an easy, less time-consuming, and efficient method that
became popular quickly. This method of vacuum infiltration was also applied to other
plant species such as Petunia hybrida , B. rapa L. ssp. chinensis , sugarcane and
Raphanus sativu L. longipinnatus.
a) Floral dip method –
In the floral dip method, the complete inflorescence of the plant is dipped in a
solution of the appropriate strain of Agrobacterium tumifaciens, then seeds are collected
from these “T0” plants and allowed to germinate in a selection for the identification of
transgenics. This method was first practiced in A. thaliana by Bechtold et al. (1998. Apart
from Arabidopsis, many other plant species have been transformed using the floral dip
technique such as B. napus and B. carinata, maize, radishes, wheat and S. lycopersicum.
b) Floral drop method —
In this method inflorescence was trimmed and then the Agrobacterium-containing
medium was directly dropped on these trimmed inflorescences so that individual spikelet
cups get the Agrobacterium-containing medium. These Agrobacterium-dropped spikelets
were then covered with bags and allowed to grow until seed collection.
c) Embryo transformation –
Embryo transformation involves the manipulation of the totipotent/meristematic
cells for the production of transgenic plants. In cotton, the apical meristem (AM) tissues
of the embryo are wounded at the seed germination time and this wounded part is used as
the explant to infect by Agrobacterium tumefaciens. Here, the seeds were first imbibed
and then germinated at 4°C for 2 weeks. These young seedlings were infiltrated with A.
tumefaciens suspension.
10. 10
Comparison of the callus method and the in planta method for rice transformation
Advantages:
• Avoids the tissue culture method
• Easy and Convenient
• Addresses the biosafety issue
• Reduction in genetic variability in the transformant
• Thousands of transformants were produced in a few year.
Disadvantages:
• Difficult to produce genotype consistently
• Low expression of transgenes
• Low transformation frequency
VECTORLESS GENE TRANSFER (DIRECT METHOD)
When the foreign DNA is directly inserted into the plant genome, the word direct or
vector less DNA transmission is used. Direct DNA transfer methods rely on naked DNA being
delivered into the plant cells. This contrasts with the transfer of agrobacterium or vector-
mediated DNA that can be considered indirect methods. The majority of the methods for direct
transfer of DNA are simple and effective. And in addition to this process has been used to
develop other transgenic plants. The introduction of DNA into plant cells without biological
agents such as Agrobacterium being involved and leading to stable transformation is called direct
gene transfer.
11. 11
TYPES OF DIRECT DNA TRANSFER
The direct DNA transfer can be broadly divided into three categories.
1. Physical gene transfer methods:
1.1 Electroporation
1.2 Particle bombardment
1.3 Micro injection
1.4 Liposome-Mediated Transformation
1.5 Silicon Carbide Fibre-Mediated Transformation
2. Chemical gene transfer methods:
2.1 Poly-ethylene glycol (PEG)-mediated
2.2 Diethyl amino ethyl (DEAE) dextran-mediated
2.3 Calcium phosphate precipitation
3. DNA imbibition by cells/tissues/organs
4. Pollen transformation
5. Delivery via growing pollen tubes
6. Laser induced transformation
7. Etc.
1. Physical gene transfer methods
1.1 Electroporation
Electroporation is the incorporation of DNA into the cell by exposing them to high
voltage electrical pulses for a very short period of time to cause temporary pores in the plasma
lemma. Plant cell electroporation generally uses protoplast, while thick plant cell walls restrict
the movement of macromolecule.
The plant material is incubated in a buffer solution containing the desired foreign/target
DNA, and subjected to high voltage electrical impulses. The electric current leads to the
formation of small temporary holes in the membrane of the protoplasts through which the DNA
can pass. After entry into the cell, the Foreign DNA gets incorporated with the host genome,
resulting the genetic transformation the protoplasts are then cultured to regenerate in to whole
plants. This method can be used in those crop species in which regeneration from protoplast is
possible.
12. 12
Electroporation has been successfully used for the production of transgenic plants of
many cereals e.g. rice, wheat, maize
Advantages of electroporation
i. This technique is simple, convenient and rapid, besides being costeffective
ii. The transformed cells are at the same physiological state after electroporation
iii. Efficiency of transformation can be improved by optimising the electrical field
strength, and addition of spermidine
Limitations of electroporation
i. Under normal conditions, the amount of DNA delivered into plant cells is very low
ii. Efficiency of electroporation is highly variable depending on the plant material and
the treatment conditions
iii. Regeneration of plants is not very easy, particularly when protoplasts are used
1.2 Particle bombardment/ microprojectile/ biolistic/ gene gun/ particle acceleration
Particle bombardment is a technique used to introduce foreign DNA into plant cells.
Particle (or micro projectile) bombardment is the most effective method for gene transfer, and
creation of transgenic plants. This method is versatile due to the fact that it can be successfully
used for the DNA transfer in mammalian cells and microorganisms. The micro projectile
bombardment method was initially named as biolistics by its inventor Sanford . Biolistics is a
combination of biological and ballistics. The process of transformation employs foreign DNA
13. 13
coated with minute 0.2-0.7 µm gold (or) are tungsten particles to deliver into target plant cells.
The coated particles are loaded into a particle gun and accelerated to high speed-
By using pressurized helium gas
By electro static energy released by a droplet of water exposed to a high voltage
The target could be plant cell suspensions, callus cultures, or tissues. The projectiles penetrate
the plant cell walls and membranes. As the micro projectiles enter the cells, transgenes are
released from the particle surface for subsequent incorporation into the plant’s chromosomal
DNA.
Plant material used in bombardment: Two types of plant tissue are commonly used for
particle bombardment:
1. Primary explants which can be subjected to bombardment that are subsequently
induced to become embryo genic and regenerate
2. Proliferating embryonic tissues that can be bombarded in cultures and then allowed to
proliferate and regenerate
In order to protect plant tissues from being damaged by bombardment, cultures are maintained
on high osmoticum media or subjected to limited plasmolysis.
Transgene integration in bombardment: It is believed (based on the gene transfer in rice by
biolistics) that the gene transfer in particle bombardment is a two stage process.
1. In the pre-integration phase, the vector DNA molecules are spliced together. This
results in fragments carrying multiple gene copies
2. Integrative phase is characterized by the insertion of gene copies into the host plant
genome
The integrative phase facilitates further transgene integration which may occur at the same point
or a point close to it. The net result is that particle bombardment is frequently associated with
high copy number at a single locus. This type of single locus may be beneficial for regeneration
of plants.
The success of bombardment
The particle bombardment technique was first introduced in 1987. It has been
successfully used for the transformation of many cereals, e.g. rice, wheat, maize. In fact, the first
commercial genetically modified (CM) crops such as maize containing Bt-toxin gene were
developed by this approach.
14. 14
Factors affecting bombardment
i) Nature of micro particles: Inert metals such as tungsten, gold and platinum are used as
micro particles to carry DNA. These particles with relatively higher mass will have a
better chance to move fast when bombarded and penetrate the tissues.
ii) Nature of tissues/cells: The target cells that are capable of undergoing division are
suitable for transformation.
iii) Amount of DNA: The transformation may be low when too little DNA is used. On the
other hand, too much DNA may result is high copy number and rearrangement of
transgenes. Therefore, the quantity of DNA used should be balanced.
iv) Environmental parameters: Many environmental variables are known to influence
particle bombardment. These factors (temperature, humidity, photoperiod etc.) influence
the physiology of the plant material, and consequently the gene transfer. It is also
observed that some explants, after bombardment may require special regimes of light,
humidity, temperature etc.
The technology of particle bombardment has been improved in recent years, particularly
with regard to the use of equipment. A commercially produced particle bombardment apparatus
namely PDS-1000/HC is widely used these days.
Advantages of particle bombardment
i) Gene transfer can be efficiently done in organized tissues
ii) Different species of plants can be used to develop transgenic plants
15. 15
Limitations of particle bombardment
i) The major complication is the production of high transgene copy number. This may
result in instability of transgene expression due to gene silencing
ii) The target tissue may often get damaged due to lack of control of bombardment velocity
iii) Sometimes, undesirable chimeric plants may be regenerated
1.3 Microinjection
Microinjection is a direct physical method involving the mechanical insertion of the
desirable DNA into a target cell. The target cell may be the one identified from intact cells,
protoplasts, callus, embryos, meristems etc. Microinjection is used for the transfer of cellular
organelles and for the manipulation of chromosomes.
The DNA solution is injected directly inside the cell using capillary glass micropipettes
(0.5-10.0 pm tip) with the help of micromanipulators of a microinjection assembly. It is easier to
use protoplast than cells since cell wall interferes with the process of microinjection. The
protoplast are usually immobilized in agarose (or) on a glass slides coated with polylysine or by
holding them under suction by a micropipette.
As the process of microinjection is complete, the transformed cell is cultured and grown
to develop into a transgenic plant. In fact, transgenic tobacco and Brassica napus have been
developed by this approach. The major limitations of microinjection are that it is slow,
expensive, and has to be performed by trained and skilled personnel. The process of
microinjection is technically demanding and time consuming a maximum of 40-50 protoplasts
can be microinjected in one hour.
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1.4 Liposome-mediated transformation
Liposomes are artificially created lipid vesicles containing a phospholipid membrane.
They are successfully used in mammalian cells for the delivery of proteins, drugs etc. Liposomes
carrying genes can be employed to fuse with protoplasts and transfer the genes.
The efficiency of transformation increases when the process is carried out in conjunction
with polyethylene glycol (PEG). Liposome-mediated transformation involves adhesion of
liposomes to the protoplast surface, its fusion at the site of attachment and release of plasmids
inside the cell.
Advantages of liposome fusion
i) Being present in an encapsulated form of liposomes, DNA is protected from
environmental insults and damage
ii) DNA is stable and can be stored for some time in liposomes prior to transfer
iii) Applicable to a wide range of plant cells
iv) There is good reproducibility in the technique
Limitations of liposome fusion
The major problem with liposome-mediated transformation is the difficulty
associated with the regeneration of plants from transformed protoplasts. This method has
not been commonly used as it is difficult to construct the lipid vesicles.
1.5 Silicon carbide fibre-mediated transformation
The DNA is delivered into the cell cytoplasm and nucleus by silicon carbide fibres of 0.3-
0.6 µm diameter and 10-80 µm length. The fibres mediated delivery of DNA into the cytoplasm
is similar to microinjection. These fibres are capable of penetrating the cell wall and plasma
membrane, and thus can deliver DNA into the cells. The DNA coated silicon carbide fibres are
vortexed with ‘plant material (suspension culture, calluses). During the mixing, DNA adhering to
the fibres enters the cells and gets stably integrated with the host genome. The silicon carbide
fibres with the trade name Whiskers are available in the market. The method was successful with
maize and tobacco suspension cell culture.
Advantages of SCF-mediated transformation
i) Direct delivery of DNA into intact walled cells. This avoids the protoplast
isolation
ii) Procedure is simple, rapid and does not involve costly equipment
Disadvantages of SCF-mediated transformation
i) Silicon carbide fibres are carcinogenic and therefore have to be carefully handled
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ii) The embryonic plant cells are hard and compact and are resistant to SCF penetration
In recent years, some improvements have been made in SCF-mediated
transformation. This has helped in the transformation of rice, wheat, maize and barley
by using this technique
2. Chemical gene transfer methods
2.1 Polyethylene glycol (PEG)-mediated transfer
Polyethylene glycol (PEG), in the presence of divalent cations (using Ca2+), destabilizes the
plasma membrane of protoplasts and renders it permeable to naked DNA. In this way, the DNA
enters nucleus of the protoplasts and gets integrated with the genome. The procedure involves
the isolation of protoplasts and their suspension, addition of plasmid DNA, followed by a slow
addition of 40% PEG-4000 (w/v) dissolved in mannitol and calcium nitrate solution. As this
mixture is incubated, protoplasts get transformed
Advantages of PEG-mediated transformation
i) A large number of protoplasts can be simultaneously transformed
ii) This technique can be successfully used for a wide range of plant species
Limitations of PEG-mediated transformation
i) The DNA is susceptible for degradation and rearrangement
ii) Random integration of foreign DNA into genome may result in undesirable traits
iii) Regeneration of plants from transformed protoplasts is a difficult task
2.2 DEAE dextran-mediated transfer
The desirable DNA can be complexed with a high molecular weight polymer diethyl
amino ethyl (DEAE) dextran and transferred. The efficiency increased to 80% when DMSO
shock is given. The major limitation of this approach is that it does not yield stable trans-
formants.
2.3 Calcium phosphate co-precipitation-mediated transfer
The DNA is allowed to mix with calcium chloride solution and isotonic phosphate buffer
to form DNA-calcium phosphate precipitate. When the actively dividing cells in culture are
exposed to this precipitate for several hours, the cells get transformed. The success of this
method is dependent on the high concentration of DNA and the protection of the complex
precipitate. Addition of dimethyl sulfoxide (DMSO) increases the efficiency of transformation.
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2.4 DNA imbibition by cells tissue, embryos and seeds
When dry isolated embryos of wheat barley, rye, pea and bean are imbibed in a DNA
solution, they take up the DNA and show the expression of marker gene. Dry seeds, whose seed
coats have been removed also take up DNA when imbibed in a DNA solution. The imbibed
seeds or embryos are germinated on appropriate selective medium to isolate the transformed
embryos. It was thought that the DNA is taken up by the embryos through the cells injured
during their isolation. The DNA then moves through plasmodesmata to other cells of embryos
2.5 Pollen transformation
Involves the gene transfer by soaking the pollen grains in DNA solution prior to their use
for pollination. The method is highly attractive in view of its simplicity and general applicability
but so far there is no definite evidence for a transgene being transferred by pollen soaked in
DNA solution.
2.6 DNA delivery via growing pollen tubes
The stigmas were cut after pollination exposing the pollen tubes, the DNA was
introduced onto the cut surface that presumably diffused through the germinating pollen tube
into the ovule. This method is simple easy and very promising provided consistent result and
stable transformations are achieved the mechanism of DNA transfer into zygote through this
method is not yet established.
2.7 Laser induced transformation
It is method of introducing DNA into plant cells with a laser micro beam. Small pores in
the membrane are created by laser micro beam. The DNA from the surrounding solution may
than enter into the cell cytoplasm through the small pores. Laser-induced stress waves facilitate
targeted gene transfer. Pressure waves caused by nanosecond laser pulses can be used to deliver
macromolecules to cells and tissues. It is well established that a strong pressure wave, known as
a photomechanical or laser-induced stress wave (LISW), accompanies laser-induced plasma.