This study found that temperature heterogeneity in atherosclerotic plaques in rabbits is associated with macrophage accumulation and metalloproteinase (MMP) activity. Thermography detected hot and cold areas that correlated with higher macrophage levels and MMP-2 and MMP-9 activity. More macrophages and MMPs were present in hot areas compared to cold areas of plaques. However, blood flow obscured temperature differences, so flow was stopped to measure temperatures accurately. The results suggest temperature changes detect active macrophages and areas of plaques with higher vulnerability.