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The Progress of Cell Signaling
GPCR
Ø GPCR overview
Ø GPCR Mediated Transmembrane Signaling
Ø GPCR pharmacology
Ø Second messenger
GPCR
GPCR (G protein-coupled receptor)
Ø Seven-helix transmembrane; N-terminal in the extracellular side and C-terminal in
cytosol;
Ø C-terminal: Ser- and Thr-rich;
Ø G protein-coupled when activated.
Extracellular loop
Intracellular loop
ØDue to their abundance and significant roles in signal
transduction and cellular regulation, GPCRs
participate in the regulation of a variety of
physiological functions, such as smell, taste, vision,
secretion, metabolism, nerve system regulation,
immune response, cellular differentiation, and
embryonic development.
ØConsequently, the malfunction of GPCRs results in
many diseases, such as diabetes, obesity,
cardiovascular disease, neurodegenerative disorders,
inflammation, and cancer, making these receptors
important drug targets.
GPCRs are important signal receptors
ions, photons, hormones, neurotransmitters,
odors, lipids, large proteins, mechanical force......
GPCRs: the most complex family of receptors
Ø largest family of cell
surface receptors
Ø Structure diversity
Ø Widely expressed
- Family A - Rhodopsin
- Family B – Secretin + Adhesion
- Family C - Glutamate
- Family F - Frizzled
Nat Rev Drug Discov. 2013 Jan;12(1):25-34.
Cells express a large number of GPCRs
0
1
2
3
5
9
DIV
K25 survival) / K5 (apoptosis)
Changes during development
Changes during cell condition
Perez, Mol. Pharm 2005
Fredriksson, Mol. Pharm 2005
865
1318
268
210
1
6
0
9
3
286
737
208
1149
GPCR phylogeny
Drugs targeting to GPCRs
Nat Rev Drug Discov. 2017;16(12):829-842.
Ø There are currently 475 drugs (~34% of all drugs approved by the FDA) that act
on 108 unique GPCR targets.
Ø Approximately 321 agents are currently in clinical trials, of which ~20% target 66
potentially novel GPCR targets that do not currently have an approved drug.
Ø Biological drugs, allosteric modulators and biased agonists are becoming more
frequent in clinical trials.
Ø The major disease indications for GPCR modulators show a shift towards
diabetes, obesity and Alzheimer disease, although other central nervous system
disorders are also highly represented.
Ø The 224 (56%) non-olfactory GPCRs that are yet to be explored in clinical trials
have broad untapped therapeutic potential, particularly in genetic and immune
system disorders.
History of Nobel Prize winners in the field of
GPCR research
Rhodopsin
neurotransmitter GPCR
second messenger
G protein
GPCR antagonist
GPCR agonist
odorant GPCR
GPCR structure and G protein-
independent pathway
Millstones in GPCR field!
"for their discoveries concerning the primary physiological and
chemical visual processes in the eye."
Ragnar
Granit
Haldan Keffer
Hartline
George
Wald
1967 Nobel Prize
Rhodopsin
Ø Rhodopsin is a G-protein coupled receptor, and is the most abundant protein in the rod cells found in the retina.
Ø It functions as the primary photoreceptor molecule of vision, and contains two parts: an opsin molecule linked to
a chromophore, 11-cis-retinal.
Ø The opsin molecule is comprised of 348 amino acids, and has seven transmembrane domains.
Ø Rhodopsin is synthesized in the rough endoplasmic reticulum of the inner segments of photoreceptors and
subsequently undergoes posttranslational modifications in the Golgi before becoming functional.
Rhodopsin: phototransduction
Hydrolysis of cGMP causes cation channels to close, preventing depolarization induced by the influx of
Na + and Ca2+ . Rod cell membrane hyperpolarizes.
Photons are converted into chemical signal then electrical signal.
Front. Neurosci., 2020
Guanylyl cyclase: 鸟苷酸环化酶;PDE: phosphodiesterase, 磷酸二酯酶
Rhodopsin: phototransduction
Retinitis pigmentosa (色素性视网膜炎):
a genetic disease in retina due to the degeneration of rod cells
神经节细胞
无长突细胞
双极细胞
水平细胞
视锥细胞
视杆细胞
色素上皮
视络膜
巩膜
Front. Neurosci., 2020
Earl W.
Sutherland,
Jr.
1971 Nobel Prize
for his discoveries concerning the
mechanisms of the action of
hormones“, especially
epinephrine (肾上腺素), via
second messengers, namely
cyclic adenosine monophosphate,
or cyclic AMP.
cAMP signaling pathway
- Gs-coupled GPCRs;
PKA
AC
cAMP-PDE
Adenylyl cyclase: 腺苷酸环化酶;PDE: phosphodiesterase, 磷酸二酯酶
The Nobel Prize in Chemistry 2012
"for studies of G-protein-coupled receptors"
Robert J. Lefkowitz (1943-)
Howard Hughes Medical Institute,
Duke University Medical Center,
Durham, NC, USA
Brian K. Kobilka (1955-)
Stanford University School of Medicine,
Stanford, CA, USA
Detailed characterizations of the sequence,
structure and function of the β-adrenergic and
related receptors, discovery and
characterization of GPCR kinases (GRK) and
β-arrestins.
Determined the molecular structure of the β2-
adrenergic receptor.
Crystallized β2-adrenergic receptor/G protein
complex.
Adrenergic Receptors
• Adrenergic Receptors are targets of the catecholamine, especially norepinephrine and
epinephrine.
• Many cells possess these receptors, and the binding of a catecholamine to the receptor
will generally stimulate the sympathetic nervous system.
• The sympathetic nervous system is responsible
for the fight-or-flight response, which includes
widening the pupils of the eye, mobilizing
energy, and diverting blood flow from non-
essential organs to skeletal muscle.
• Categories:
– α-ARs: α1, α2
– -ARs: 1, 2, 3
(β-adrenoceptor)
Difficulties for GPCR structure
Expression
Low abundance of GPCRs at the cell surface; Difficulties in correct
folding……
Purification
7TM domain stability, large extracellular domain, dimer…..
Analyze
Computational expansion and dissemination
Brian K. Kobilka (1955-)
Stanford University School of Medicine,
Stanford, CA, USA
½ The Nobel Prize in Chemistry 2012
Determined the molecular structure of the
β2-adrenergic receptor.
Crystallized β2-adrenergic receptor/G
protein complex.
Robert J. Lefkowitz (1943-)
Howard Hughes Medical Institute,
Duke University Medical Center,
Durham, NC, USA
Detailed characterizations of the sequence,
structure and function of the β-adrenergic and
related receptors, discovery and
characterization of GPCR kinases (GRK) and
β-arrestins.
Cryo-Electron Microscopy (Cryo-EM)
The Nobel Prize in chemistry awarded to physicists helps biologists.
Richard Henderson
1/3 2017 Nobel Prize in Chemistry
“for developing cryo-electron microscopy for the
high-resolution structure determination of
biomolecules in solution”
Subramaniam, Henderson,
Nature, 2000
Unwin and Henderson,
Nature 1975
Bacteriorhodopsin
Source: http://www.gpcrdb.org
Updated to Sep 6th, 2022
Source: http://www.gpcrdb.org
Updated to Sep 5th, 2023
2020
GABAB GABAB-Gi
2020
mGlu5
GPCRs book
2021
2020
Ste2 GPR97
2021
Many “first” structure solved
by Chinese Group!!
Class F
Class B2
Class C
Class B1
2022
Class B2
GPR133 GPR114 TAS2R
2022
Class T
Source: http://www.gpcrdb.org
*Active state is defined as agonist-bound and opened intracellular TM bundle.
**Receptor-orthologues are only counted once.
Apo Agonist
Agonist
+ PAM
Agonist
+ G protein
Antagonist
Antagonist
+ NAM
Agonist
+ PAM
+ G protein
Active state is defined as G protein-bound or
agonist-bound and opened intracellular TM bundle.
Inactive state is defined as antagonist-bound and
antagonist and NAM-bound.
Active
Inactive Intermediate
Nat Rev Drug Discov. 2013;12(1):25-34
The GPCR Network: a large-scale collaboration to
determine human GPCR structure and function
2022年7 月28 日,DeepMind 公司在官网公布了最新突破,其与欧洲生物信息研究所(EMBL-EBI)合作,通过
AlphaFold成功预测了来自100万个物种的约2亿种蛋白质结构,几乎涵盖了地球上所有已知的蛋白质。
https://alphafold.com/
AlphaFold
Question:
What can AlphaFold do for GPCR research?What does it can not do?
?
PDB 7BZ2
Cell Discov. 2020 Jul 7;6:45.
Virtual screening
History of Nobel Prize winners in the field
of GPCR research
Rhodopsin
neurotransmitter GPCR
cAMP, the secondary messenger
G protein
GPCR antagonist
GPCR agonist
GPCR structure and transduction
odorant GPCR cAMP
G
GPCR
Millstones in GPCR field!
Knowledge points summary
Ø GPCR
Ø Important finding in GPCR history
Ø cAMP
Ø GPCR structure determination
Ø AlphaFold
Ø High throughput drug screening
GPCRs: the most complex family of receptors
Ø largest family of cell
surface receptors
Ø Structure diversity
Ø Widely expressed
- Family A - Rhodopsin
- Family B – Secretin + Adhesion
- Family C - Glutamate
- Family F - Frizzled
Nat Rev Drug Discov. 2013 Jan;12(1):25-34.
Classification of GPCRs
GPCRs book
Rhodopsin
Class A GPCR examples:
Adrenergic Receptors
• 心力衰竭(heart failure) 又称心肌衰竭,是指
心脏不能搏出同静脉回流及身体组织代谢所
需相称的血液供应的一种复杂的临床综合征。
• 心力衰竭中,交感神经系统和肾素- 血管紧张
素系统均呈现活跃,这些系统活动的增强在
疾病发生之初代偿降低了的血压和心输出量,
短期内较为有效。但是,长期在血液循环中
高浓度的儿茶酚胺和血管紧张素增加了心脏
工作量,导致适应不良性心脏重塑和心肌细
胞死亡
A progressive heart disease that affects
pumping action of the heart muscles.
Heart failure
Cardiotonic (强心针):adrenaline (epinephrine) or Norepinephrine (Noradrenaline)
高血压(hypertension)
收缩压≥140毫米汞柱,
舒张压≥90毫米汞柱
Angiotensin II type 1 receptor (AT1R)
Class A GPCR examples:
Angiotensin II receptor type 1 or AT₁
receptor is the best characterized
angiotensin receptor.
It has vasopressor effects and regulates
aldosterone (醛固酮) secretion.
It is an important effector controlling
blood pressure and volume in the
cardiovascular system.
Angiotensin II receptor antagonists are drug
s indicated for hypertension,
diabetic nephropathy and congestive
heart failure (糖尿病肾病与充血性心力衰竭).
醛固酮
血管紧张素原
肾素
血管紧张素转换酶
肾上腺
血管收缩
Ø 利尿药
Ø 交感神经抑制药:中枢降压药;神经
节阻断药;抗去甲肾上腺素能神经末
梢药(利血平);肾上腺受体阻断药
Ø 钙通道阻断药肾素-血管紧张素受体
阻断药:血管紧张素转化酶抑制剂;
血管紧张素II受体阻断剂;肾素抑制
药
Ø 作用于血管平滑肌的抗高血压药
opioids receptors (m, d, k, NOP)
Morphine: m-opioid receptor
Endorphine:
YGGFMTSEKSQTPLVTLFKNAIIKNAYKKGE
Dynorphin A:
YGGFLRRIRPKLKWDNQ
Class A GPCR examples:
内啡肽
强啡肽A
Dopamine & Serotonin receptors
5-HT1D
D1-R
D2-R
5-HT2A
5-HT5A
5-HT4
5-HT6
5-HT7
5-HT2B
5-HT2C
5-HT5B
5-HT1A
5-HT1E
5-HT1B
5-HT1F
D3-R
D4-R
D5-R
Class A GPCR examples:
Chemokines receptors
18 Chemokines receptors
in human (CC and CXC)
Class A GPCR examples:
CCR5 / CXCR4 and HIV infection
Complex CD4 and co-receptor
(CCR5 or CXCR4)
Per Johan Klasse (2012) Cell Microbiol
GPCRs: the most
complex family of
receptors
- Family A - Rhodopsin
- Family B – Secretin + Adhesion
- Family C - Glutamate
- Family F - Frizzled
Nat Rev Drug Discov. 2013 Jan;12(1):25-34. 乙酰胆碱
神经降
压素
腺苷
组胺
白三烯
内皮细胞
分化因子
受体
加压素
受体
Mas-related GPCR
嘌呤(ATP,ADP,UTP)
速激肽
受体
凝血酶
受体
前列
腺素
«secretin» receptors
15 receptors
Gastrointestinal peptide
(GLP-1)胃肠肽
Glucagon胰高血糖素
Growth hormone-releasing peptide
生长激素释放肽
Parathyroid hormone甲状旁腺激素
Vasoactive intestinal peptide (VIP)
血管活性肠肽
Pituitary adenylate cyclase-
activating peptide垂体腺苷酸环化酶
激活肽
Calcitonin降钙素
Corticotrophin-releasing hormone促
肾上腺皮质激素释放激素
Class B GPCR examples:
GLP-1R: Glucagon-Like Peptide-1 Receptor
a major therapeutic target for the treatment of type 2 diabetes
Nature, 2017
Overall structure of the GLP-1R TMD
Class B GPCR examples:
33 receptors
«Adhesion» receptors
Class B GPCR examples:
N-terminal fragment (NTF): extracellular NTF generated by the autoproteolytic cleavage of the GAIN
domain.
C-terminal fragment (CTF): membrane-spanning C-terminal fragment generated by the autoproteolytic
cleavage of the GAIN domain.
GPCR Autoproteolysis Inducing (GAIN) domain:An evolutionarily conserved domain (~320 amino
acids) shared by adhesion G protein-coupled receptors and polycystic kidney disease proteins. The
GAIN domain is both necessary and sufficient for receptor autocleavage.
GPCR proteolysis site (GPS) motif Langenhan T, et al. Nat Rev Neurosci. 2016. PMID: 27466150 Review.
Structural basis for the tethered peptide activation of adhesion GPCRs
https://doi.org/10.1038/s41586-022-04619-y
Tethered peptide activation mechanism of the adhesion GPCRs ADGRG2 and ADGRG4
https://doi.org/10.1038/s41586-022-04590-8
Structural basis of tethered agonism of the adhesion GPCRs ADGRD1 and ADGRF1
https://doi.org/10.1038/s41586-022-04580-w
The tethered peptide activation mechanism of adhesion GPCRs
https://doi.org/10.1038/s41586-022-04575-7
Four Nature
paper in 2022
2+3+4+2=11
Cryo-EM
structures
GPCRs: the most
complex family of
receptors
- Family A - Rhodopsin
- Family B – Secretin + Adhesion
- Family C - Glutamate
- Family F - Frizzled
Nat Rev Drug Discov. 2013 Jan;12(1):25-34.
Class C GPCRs
• Calcium-sensing receptor-related (CaS)
• Metabotropic glutamate receptors (mGluR)
• GABAB receptors
• RAIG (Retinoic acid-inducible orphan G PCRs)
• Taste receptors
• Orphan receptors: ligands are not identified yet
Cys-rich Domain
Heptahelical Domain
Agonists
Antagonists
G-protein
General Structure of Type C GPCRs
HD
VFT
CRD
Venus Flytrap Domain
Allosteric Modulator, AM
The Structure of mGlu1 VFT
Kunishima et al., Nature, 2000
OPEN without Glu CLOSED with Glu
Metabotropic glutamate receptors
22 receptors
mGluRs: key modulators of Glu transmission
Class C GPCR examples:
Niswender & Conn, 2010 – Ann Rev Pharmacol and Toxicol
mGluRs
excitatory
post-synaptic
ionotropic receptor activity
pre-synaptic
glutamate release
mGlu 1,5
mGlu 2,3,4,7,8
Pain
Parkinson’s
disease
Alzheimer
disease
Anxiety
Schizophrenia
Drug addiction
Suzie Chen’s group Nature Genetics 2003
WT
TG3
TG3
黑色素细胞瘤
Niswender & Conn, 2010 – Ann Rev Pharmacol and Toxicol
mGluRs
excitatory
GABAB
inhibition
γ-aminobutyric acid
GABAB receptors
Spasticity (Lioresal®)
Pain
Anxiety & Depression
Drug addiction
Absence Epilepsy
Cognitive disorders
Therapeutic target
slow synaptic
inhibition
Class C GPCR examples:
GABAB and medication
Pre- and clinical studies have shown GABA transmission and GABAB receptor play
a modulatory role in the mechanism of action of drugs of abuse (in particular
alcohol addiction).
Pathology Drugs Phase
spasticity Agonist (baclofen : Lioresal) Commercial
drug addiction Agonist (CGP44532) Development
pain Agonist (CGP35024) Development
narcolepsy Partial agonist (GHB : Xyrem) Commercial
anxiety PAM (CGP7930) Development
Alzheimer Antagonist (SGS-742) Phase II
epilepsy Antagonist (CGP35348) Development
Foster and Kemp, 2005
Jacobson and Cryan, 2008
GABA
Baclofen
GABAB is a G protein-coupled receptor for GABA
date rape drug
GHB
g-hydroxybutyric acid
Baclofen in drug addiction
ü Poor blood-brain barrier penetrance
ü Short half-life (3-4 h)
ü Fast tolerance
ü Secondary effects (sedative effect, headache)
baclofen (Lioresal®)
Anti-spasticity
drug
Ameisen et al., Alcohol & Acoholism, 2005
Addolorato et al., Alcohol 2009
baclofen to treat addiction in particular alcohol relapse
GABA
Sci Transl Med. 2012 Sep 19;4(152):152ra127.
Umami and sweet Taste receptors
Class C GPCR examples:
Class C - Umami and sweet Taste receptors
Dimerization of GPCRs
Class A GPCR
2-AR
S S
Class C GPCR
mGluR
Class B GPCR
GLP-1R
mGluR
Homodimers
GABAB Receptors
Heterodimer
• Metabotropic receptor, consisted of GB1 and GB2
subunits.
• GB1 binds to the ligand GABA, GB2 is defective
in ligand binding, but it is coupled to G protein.
GB1 GB2
GPCR heterodimer
GFP2
BRET2
mGlu2
5HT2a
Doumazane E., FASEB J., 2011; Yin, S., J Neurosci., 2014; Javier Gonza´lez-Maeso., Nature, 2008
Venus Rluc
GPCR dimerization and oligomerization
Calebiro, D.,Proc Natl Acad Sci USA. 2013
GPCR Signal regulation by dimerization
New pharmacology of herterodimers
GABABR tetramer
tetramer
dimer
D1/D2R heterodimer
GPCRs book
e.g:Ø Rhodopsin
Ø Adrenergic receptor
Ø Angiotensin II type 1
receptor
Ø opioids receptors
Ø Dopamine & Serotonin
receptors
Ø Chemokine receptors
Ø Secretin receptors
Ø Adhesion receptors
Ø mGlu receptor
Ø GABAB receptor
Ø Calcium sensing receptors
Ø Frizzle receptors
Knowledge points summary
Ø The characteristics of different GPCR classes
Ø The representative members in GPCR class
Ø GPCR dimerization
The end!

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2 GPCR overview.pdfunderstanding of the the role of G coupled receptors

  • 1. The Progress of Cell Signaling
  • 2. GPCR Ø GPCR overview Ø GPCR Mediated Transmembrane Signaling Ø GPCR pharmacology Ø Second messenger
  • 4.
  • 5. GPCR (G protein-coupled receptor) Ø Seven-helix transmembrane; N-terminal in the extracellular side and C-terminal in cytosol; Ø C-terminal: Ser- and Thr-rich; Ø G protein-coupled when activated. Extracellular loop Intracellular loop
  • 6. ØDue to their abundance and significant roles in signal transduction and cellular regulation, GPCRs participate in the regulation of a variety of physiological functions, such as smell, taste, vision, secretion, metabolism, nerve system regulation, immune response, cellular differentiation, and embryonic development. ØConsequently, the malfunction of GPCRs results in many diseases, such as diabetes, obesity, cardiovascular disease, neurodegenerative disorders, inflammation, and cancer, making these receptors important drug targets. GPCRs are important signal receptors ions, photons, hormones, neurotransmitters, odors, lipids, large proteins, mechanical force......
  • 7. GPCRs: the most complex family of receptors Ø largest family of cell surface receptors Ø Structure diversity Ø Widely expressed - Family A - Rhodopsin - Family B – Secretin + Adhesion - Family C - Glutamate - Family F - Frizzled Nat Rev Drug Discov. 2013 Jan;12(1):25-34.
  • 8. Cells express a large number of GPCRs 0 1 2 3 5 9 DIV K25 survival) / K5 (apoptosis) Changes during development Changes during cell condition
  • 9. Perez, Mol. Pharm 2005 Fredriksson, Mol. Pharm 2005 865 1318 268 210 1 6 0 9 3 286 737 208 1149 GPCR phylogeny
  • 10. Drugs targeting to GPCRs Nat Rev Drug Discov. 2017;16(12):829-842. Ø There are currently 475 drugs (~34% of all drugs approved by the FDA) that act on 108 unique GPCR targets. Ø Approximately 321 agents are currently in clinical trials, of which ~20% target 66 potentially novel GPCR targets that do not currently have an approved drug. Ø Biological drugs, allosteric modulators and biased agonists are becoming more frequent in clinical trials. Ø The major disease indications for GPCR modulators show a shift towards diabetes, obesity and Alzheimer disease, although other central nervous system disorders are also highly represented. Ø The 224 (56%) non-olfactory GPCRs that are yet to be explored in clinical trials have broad untapped therapeutic potential, particularly in genetic and immune system disorders.
  • 11. History of Nobel Prize winners in the field of GPCR research Rhodopsin neurotransmitter GPCR second messenger G protein GPCR antagonist GPCR agonist odorant GPCR GPCR structure and G protein- independent pathway Millstones in GPCR field!
  • 12. "for their discoveries concerning the primary physiological and chemical visual processes in the eye." Ragnar Granit Haldan Keffer Hartline George Wald 1967 Nobel Prize
  • 13. Rhodopsin Ø Rhodopsin is a G-protein coupled receptor, and is the most abundant protein in the rod cells found in the retina. Ø It functions as the primary photoreceptor molecule of vision, and contains two parts: an opsin molecule linked to a chromophore, 11-cis-retinal. Ø The opsin molecule is comprised of 348 amino acids, and has seven transmembrane domains. Ø Rhodopsin is synthesized in the rough endoplasmic reticulum of the inner segments of photoreceptors and subsequently undergoes posttranslational modifications in the Golgi before becoming functional.
  • 14. Rhodopsin: phototransduction Hydrolysis of cGMP causes cation channels to close, preventing depolarization induced by the influx of Na + and Ca2+ . Rod cell membrane hyperpolarizes. Photons are converted into chemical signal then electrical signal. Front. Neurosci., 2020 Guanylyl cyclase: 鸟苷酸环化酶;PDE: phosphodiesterase, 磷酸二酯酶
  • 15. Rhodopsin: phototransduction Retinitis pigmentosa (色素性视网膜炎): a genetic disease in retina due to the degeneration of rod cells 神经节细胞 无长突细胞 双极细胞 水平细胞 视锥细胞 视杆细胞 色素上皮 视络膜 巩膜 Front. Neurosci., 2020
  • 16. Earl W. Sutherland, Jr. 1971 Nobel Prize for his discoveries concerning the mechanisms of the action of hormones“, especially epinephrine (肾上腺素), via second messengers, namely cyclic adenosine monophosphate, or cyclic AMP. cAMP signaling pathway - Gs-coupled GPCRs; PKA AC cAMP-PDE Adenylyl cyclase: 腺苷酸环化酶;PDE: phosphodiesterase, 磷酸二酯酶
  • 17. The Nobel Prize in Chemistry 2012 "for studies of G-protein-coupled receptors" Robert J. Lefkowitz (1943-) Howard Hughes Medical Institute, Duke University Medical Center, Durham, NC, USA Brian K. Kobilka (1955-) Stanford University School of Medicine, Stanford, CA, USA Detailed characterizations of the sequence, structure and function of the β-adrenergic and related receptors, discovery and characterization of GPCR kinases (GRK) and β-arrestins. Determined the molecular structure of the β2- adrenergic receptor. Crystallized β2-adrenergic receptor/G protein complex.
  • 18. Adrenergic Receptors • Adrenergic Receptors are targets of the catecholamine, especially norepinephrine and epinephrine. • Many cells possess these receptors, and the binding of a catecholamine to the receptor will generally stimulate the sympathetic nervous system. • The sympathetic nervous system is responsible for the fight-or-flight response, which includes widening the pupils of the eye, mobilizing energy, and diverting blood flow from non- essential organs to skeletal muscle. • Categories: – α-ARs: α1, α2 – -ARs: 1, 2, 3 (β-adrenoceptor)
  • 19. Difficulties for GPCR structure Expression Low abundance of GPCRs at the cell surface; Difficulties in correct folding…… Purification 7TM domain stability, large extracellular domain, dimer….. Analyze Computational expansion and dissemination
  • 20. Brian K. Kobilka (1955-) Stanford University School of Medicine, Stanford, CA, USA ½ The Nobel Prize in Chemistry 2012 Determined the molecular structure of the β2-adrenergic receptor. Crystallized β2-adrenergic receptor/G protein complex.
  • 21.
  • 22. Robert J. Lefkowitz (1943-) Howard Hughes Medical Institute, Duke University Medical Center, Durham, NC, USA Detailed characterizations of the sequence, structure and function of the β-adrenergic and related receptors, discovery and characterization of GPCR kinases (GRK) and β-arrestins.
  • 23. Cryo-Electron Microscopy (Cryo-EM) The Nobel Prize in chemistry awarded to physicists helps biologists.
  • 24. Richard Henderson 1/3 2017 Nobel Prize in Chemistry “for developing cryo-electron microscopy for the high-resolution structure determination of biomolecules in solution” Subramaniam, Henderson, Nature, 2000 Unwin and Henderson, Nature 1975 Bacteriorhodopsin
  • 27. 2020 GABAB GABAB-Gi 2020 mGlu5 GPCRs book 2021 2020 Ste2 GPR97 2021 Many “first” structure solved by Chinese Group!! Class F Class B2 Class C Class B1 2022 Class B2 GPR133 GPR114 TAS2R 2022 Class T
  • 28. Source: http://www.gpcrdb.org *Active state is defined as agonist-bound and opened intracellular TM bundle. **Receptor-orthologues are only counted once.
  • 29. Apo Agonist Agonist + PAM Agonist + G protein Antagonist Antagonist + NAM Agonist + PAM + G protein Active state is defined as G protein-bound or agonist-bound and opened intracellular TM bundle. Inactive state is defined as antagonist-bound and antagonist and NAM-bound. Active Inactive Intermediate
  • 30. Nat Rev Drug Discov. 2013;12(1):25-34 The GPCR Network: a large-scale collaboration to determine human GPCR structure and function
  • 31.
  • 32.
  • 33. 2022年7 月28 日,DeepMind 公司在官网公布了最新突破,其与欧洲生物信息研究所(EMBL-EBI)合作,通过 AlphaFold成功预测了来自100万个物种的约2亿种蛋白质结构,几乎涵盖了地球上所有已知的蛋白质。 https://alphafold.com/
  • 34. AlphaFold Question: What can AlphaFold do for GPCR research?What does it can not do?
  • 35. ?
  • 36. PDB 7BZ2 Cell Discov. 2020 Jul 7;6:45. Virtual screening
  • 37. History of Nobel Prize winners in the field of GPCR research Rhodopsin neurotransmitter GPCR cAMP, the secondary messenger G protein GPCR antagonist GPCR agonist GPCR structure and transduction odorant GPCR cAMP G GPCR Millstones in GPCR field!
  • 38. Knowledge points summary Ø GPCR Ø Important finding in GPCR history Ø cAMP Ø GPCR structure determination Ø AlphaFold Ø High throughput drug screening
  • 39. GPCRs: the most complex family of receptors Ø largest family of cell surface receptors Ø Structure diversity Ø Widely expressed - Family A - Rhodopsin - Family B – Secretin + Adhesion - Family C - Glutamate - Family F - Frizzled Nat Rev Drug Discov. 2013 Jan;12(1):25-34.
  • 41. Rhodopsin Class A GPCR examples: Adrenergic Receptors
  • 42. • 心力衰竭(heart failure) 又称心肌衰竭,是指 心脏不能搏出同静脉回流及身体组织代谢所 需相称的血液供应的一种复杂的临床综合征。 • 心力衰竭中,交感神经系统和肾素- 血管紧张 素系统均呈现活跃,这些系统活动的增强在 疾病发生之初代偿降低了的血压和心输出量, 短期内较为有效。但是,长期在血液循环中 高浓度的儿茶酚胺和血管紧张素增加了心脏 工作量,导致适应不良性心脏重塑和心肌细 胞死亡 A progressive heart disease that affects pumping action of the heart muscles. Heart failure Cardiotonic (强心针):adrenaline (epinephrine) or Norepinephrine (Noradrenaline)
  • 44. Angiotensin II type 1 receptor (AT1R) Class A GPCR examples: Angiotensin II receptor type 1 or AT₁ receptor is the best characterized angiotensin receptor. It has vasopressor effects and regulates aldosterone (醛固酮) secretion. It is an important effector controlling blood pressure and volume in the cardiovascular system. Angiotensin II receptor antagonists are drug s indicated for hypertension, diabetic nephropathy and congestive heart failure (糖尿病肾病与充血性心力衰竭).
  • 46. Ø 利尿药 Ø 交感神经抑制药:中枢降压药;神经 节阻断药;抗去甲肾上腺素能神经末 梢药(利血平);肾上腺受体阻断药 Ø 钙通道阻断药肾素-血管紧张素受体 阻断药:血管紧张素转化酶抑制剂; 血管紧张素II受体阻断剂;肾素抑制 药 Ø 作用于血管平滑肌的抗高血压药
  • 47. opioids receptors (m, d, k, NOP) Morphine: m-opioid receptor Endorphine: YGGFMTSEKSQTPLVTLFKNAIIKNAYKKGE Dynorphin A: YGGFLRRIRPKLKWDNQ Class A GPCR examples: 内啡肽 强啡肽A
  • 48. Dopamine & Serotonin receptors 5-HT1D D1-R D2-R 5-HT2A 5-HT5A 5-HT4 5-HT6 5-HT7 5-HT2B 5-HT2C 5-HT5B 5-HT1A 5-HT1E 5-HT1B 5-HT1F D3-R D4-R D5-R Class A GPCR examples:
  • 49. Chemokines receptors 18 Chemokines receptors in human (CC and CXC) Class A GPCR examples:
  • 50. CCR5 / CXCR4 and HIV infection Complex CD4 and co-receptor (CCR5 or CXCR4) Per Johan Klasse (2012) Cell Microbiol
  • 51. GPCRs: the most complex family of receptors - Family A - Rhodopsin - Family B – Secretin + Adhesion - Family C - Glutamate - Family F - Frizzled Nat Rev Drug Discov. 2013 Jan;12(1):25-34. 乙酰胆碱 神经降 压素 腺苷 组胺 白三烯 内皮细胞 分化因子 受体 加压素 受体 Mas-related GPCR 嘌呤(ATP,ADP,UTP) 速激肽 受体 凝血酶 受体 前列 腺素
  • 52. «secretin» receptors 15 receptors Gastrointestinal peptide (GLP-1)胃肠肽 Glucagon胰高血糖素 Growth hormone-releasing peptide 生长激素释放肽 Parathyroid hormone甲状旁腺激素 Vasoactive intestinal peptide (VIP) 血管活性肠肽 Pituitary adenylate cyclase- activating peptide垂体腺苷酸环化酶 激活肽 Calcitonin降钙素 Corticotrophin-releasing hormone促 肾上腺皮质激素释放激素 Class B GPCR examples:
  • 53. GLP-1R: Glucagon-Like Peptide-1 Receptor a major therapeutic target for the treatment of type 2 diabetes Nature, 2017 Overall structure of the GLP-1R TMD Class B GPCR examples:
  • 54. 33 receptors «Adhesion» receptors Class B GPCR examples: N-terminal fragment (NTF): extracellular NTF generated by the autoproteolytic cleavage of the GAIN domain. C-terminal fragment (CTF): membrane-spanning C-terminal fragment generated by the autoproteolytic cleavage of the GAIN domain. GPCR Autoproteolysis Inducing (GAIN) domain:An evolutionarily conserved domain (~320 amino acids) shared by adhesion G protein-coupled receptors and polycystic kidney disease proteins. The GAIN domain is both necessary and sufficient for receptor autocleavage. GPCR proteolysis site (GPS) motif Langenhan T, et al. Nat Rev Neurosci. 2016. PMID: 27466150 Review.
  • 55. Structural basis for the tethered peptide activation of adhesion GPCRs https://doi.org/10.1038/s41586-022-04619-y Tethered peptide activation mechanism of the adhesion GPCRs ADGRG2 and ADGRG4 https://doi.org/10.1038/s41586-022-04590-8 Structural basis of tethered agonism of the adhesion GPCRs ADGRD1 and ADGRF1 https://doi.org/10.1038/s41586-022-04580-w The tethered peptide activation mechanism of adhesion GPCRs https://doi.org/10.1038/s41586-022-04575-7 Four Nature paper in 2022 2+3+4+2=11 Cryo-EM structures
  • 56. GPCRs: the most complex family of receptors - Family A - Rhodopsin - Family B – Secretin + Adhesion - Family C - Glutamate - Family F - Frizzled Nat Rev Drug Discov. 2013 Jan;12(1):25-34.
  • 57. Class C GPCRs • Calcium-sensing receptor-related (CaS) • Metabotropic glutamate receptors (mGluR) • GABAB receptors • RAIG (Retinoic acid-inducible orphan G PCRs) • Taste receptors • Orphan receptors: ligands are not identified yet
  • 58. Cys-rich Domain Heptahelical Domain Agonists Antagonists G-protein General Structure of Type C GPCRs HD VFT CRD Venus Flytrap Domain Allosteric Modulator, AM
  • 59. The Structure of mGlu1 VFT Kunishima et al., Nature, 2000 OPEN without Glu CLOSED with Glu
  • 60. Metabotropic glutamate receptors 22 receptors mGluRs: key modulators of Glu transmission Class C GPCR examples:
  • 61. Niswender & Conn, 2010 – Ann Rev Pharmacol and Toxicol mGluRs excitatory post-synaptic ionotropic receptor activity pre-synaptic glutamate release mGlu 1,5 mGlu 2,3,4,7,8 Pain Parkinson’s disease Alzheimer disease Anxiety Schizophrenia Drug addiction
  • 62. Suzie Chen’s group Nature Genetics 2003 WT TG3 TG3 黑色素细胞瘤
  • 63.
  • 64. Niswender & Conn, 2010 – Ann Rev Pharmacol and Toxicol mGluRs excitatory GABAB inhibition γ-aminobutyric acid
  • 65. GABAB receptors Spasticity (Lioresal®) Pain Anxiety & Depression Drug addiction Absence Epilepsy Cognitive disorders Therapeutic target slow synaptic inhibition Class C GPCR examples:
  • 66. GABAB and medication Pre- and clinical studies have shown GABA transmission and GABAB receptor play a modulatory role in the mechanism of action of drugs of abuse (in particular alcohol addiction). Pathology Drugs Phase spasticity Agonist (baclofen : Lioresal) Commercial drug addiction Agonist (CGP44532) Development pain Agonist (CGP35024) Development narcolepsy Partial agonist (GHB : Xyrem) Commercial anxiety PAM (CGP7930) Development Alzheimer Antagonist (SGS-742) Phase II epilepsy Antagonist (CGP35348) Development Foster and Kemp, 2005 Jacobson and Cryan, 2008 GABA Baclofen GABAB is a G protein-coupled receptor for GABA date rape drug GHB g-hydroxybutyric acid
  • 67. Baclofen in drug addiction ü Poor blood-brain barrier penetrance ü Short half-life (3-4 h) ü Fast tolerance ü Secondary effects (sedative effect, headache) baclofen (Lioresal®) Anti-spasticity drug Ameisen et al., Alcohol & Acoholism, 2005 Addolorato et al., Alcohol 2009 baclofen to treat addiction in particular alcohol relapse GABA
  • 68. Sci Transl Med. 2012 Sep 19;4(152):152ra127.
  • 69.
  • 70. Umami and sweet Taste receptors Class C GPCR examples:
  • 71. Class C - Umami and sweet Taste receptors
  • 72. Dimerization of GPCRs Class A GPCR 2-AR S S Class C GPCR mGluR Class B GPCR GLP-1R
  • 73. mGluR Homodimers GABAB Receptors Heterodimer • Metabotropic receptor, consisted of GB1 and GB2 subunits. • GB1 binds to the ligand GABA, GB2 is defective in ligand binding, but it is coupled to G protein. GB1 GB2
  • 74. GPCR heterodimer GFP2 BRET2 mGlu2 5HT2a Doumazane E., FASEB J., 2011; Yin, S., J Neurosci., 2014; Javier Gonza´lez-Maeso., Nature, 2008 Venus Rluc
  • 75. GPCR dimerization and oligomerization Calebiro, D.,Proc Natl Acad Sci USA. 2013
  • 76. GPCR Signal regulation by dimerization
  • 77. New pharmacology of herterodimers GABABR tetramer tetramer dimer D1/D2R heterodimer
  • 78. GPCRs book e.g:Ø Rhodopsin Ø Adrenergic receptor Ø Angiotensin II type 1 receptor Ø opioids receptors Ø Dopamine & Serotonin receptors Ø Chemokine receptors Ø Secretin receptors Ø Adhesion receptors Ø mGlu receptor Ø GABAB receptor Ø Calcium sensing receptors Ø Frizzle receptors Knowledge points summary Ø The characteristics of different GPCR classes Ø The representative members in GPCR class Ø GPCR dimerization