3. The branch of biology which deals with
the study of structure, function,
molecular organisation, growth,
reproduction & genetics is called
Cytology/Cell Biology
Simple microscope 50--100 times
Compound microscope -- 1000 times &
more
Electron microscope – 500000 times
Cells have no specific/typical shape
(rectangular, circular, conical,
columnar)
Introduction
4. The Great Team
The term “Cell” was
introduced by Robert
Hooke
Anton van
Leeuwenhoek reported
other types of cells
J. E. Purkinje coined
the term Protoplasm.
Robert Brown
discovered & named
Nucleus
Historical Account
5. Historical Account
Robert Hooke's microscope
A reproduction of Anton
van Leeuwenhoek's
microscope from the 17th
century with a
magnification of 300x
Drawing of the structure of
cork by Robert Hooke that
appeared in Micrographia
8. Cell Theory/Cell Doctrine
All organisms are made up of cells
Cell is the basic structural &
functional unit of life
Cells have genetic information & is passed from generation
to generation.
Cells are similar in their chemical composition & metabolic
activity.
All cells arise from pre-existing cells
Cells are duplicating, self-contained units.
9. Exceptions to Cell Theory
Viruses do not have cellular organisation
Bacteria & BGA are prokaryotes, they do not show true
cellular structures
Capacity of living nucleated cell, to differentiate into any
other type of cell & thus form a complete new organism.
TOTIPOTENCY
11. Pro – primitive Karyon – nucleus
Bacteria & Blue green algae constitute this group
There are four forms of bacteria
Spirilla– twisted
Cocci – spherical/ovoid
Vibrio – comma shaped
Bacilli – rodshaped
Prokaryotic Cell
Bacteria
12. Prokaryotic Cell
Blue green algae
(Cyanobacteria) are
photosynthetic prokaryotes.
They may be filamentous or
non filamentous
They fix atm. N2,
symbiotically or non
symbiotically
Blue green algae/Cyanobacteria
14. Cell Envelope
It consists of three layers namely ;
GLYCOCALYX
Glycocalyx Cell wall
Plasma membrane
Outermost, made up of
macromolecules, help in
adhesion
Some have loose sheath
Slime, few have thick &
tough capsule.
Both the layers are made up
of polysaccharides & may
contain proteins
Glycocalyx
15. CELLWALL
Present below glycocalyx,
provides definite shape &
support.
Cellwalls of different bacteria show different types of
reactions with Gram’s Stain
Made up of Peptidoglycans (Gram +ve) / Murein (Gram -ve)/ in
Eubacteria & Psuedo-peptidoglycan in Archaebacteria.
Cell Envelope
16. PLASMA MEMBRANE
Innermost covering made up
of Proteins & Lipids
Serves as barrier & helps in intercellular communication.
Bacterial plasma membrane is the site for photosynthesis,
respiration etc.
Membrane also holds receptor molecules to detect & respond
to chemicals.
Cell Envelope
17. No membrane bound nucleus, only long double stranded
circular DNA molecule
Highly coiled with the help of non histone proteins
Connected to plasma membrane through mesosome.
Nucleoid/Genome
18. Plasmids
Extra chromosomal, autonomously, self-replicating mini-
chromosomes
Render antibiotic resistance, fertility.
Used as an important tool in
Genetic engineering
19. Cytoplasm
Semi fluid ground substance or matrix.
Contains variety of inorganic & organic compounds.
Does not show cytoplasm streaming, lacks organelles.
Following membranous structures are seen
Mesosomes Chromatophores Inclusion bodies
20. Invaginations of plasma
membrane.
Forms vesicles, tubules,
lamellae.
Involved in formation of
cell wall, DNA replication.
Also involved in distribution of chromosomes to cells.
Exact function is still
unknown
Mesosomes
21. Usually seen in photosynthetic bacteria & BGA
They contain different
pigments such as;
Bacteriophaeophytin
Carotenoids
Bacteriochlorophylls
Chromatophores
22. Dense particles in the cytoplasm, made up of RNA & Proteins
Each 70s ribosome is made
up of two subunits 50s & 30s
Helps in protein synthesis
Termed as 70s ribosomes
S stands for Svedberg unit
(sedimentation in centrifuge
depending on speed & size of
particle).
Ribosomes
23. Storage granules lie freely in cytoplasm
They are of two types such as
Cyanophycean granules, Starch granules, Glycogen granules
Inorganic Inclusions
Organic Inclusions
Phosphates & Sulphur granules
Inclusion Bodies
26. Cell Wall
Protective, semi-transparent,
thick, strong, rigid
Made up of polysaccharides such as
Cellulose Pectin
Lignin Hemicellulose
Cutin
Suberin
Provides shape, helps in transport of material
Shows three layers namely
Primary cell wall – capable of
growth, seen in meristematic tissue,
mesophyll, pith.
Middle lamella – cementing substance
pectin, calcium and magnesium (ripening
is due to solubilization of pectin)
Secondary cell wall – thickens the wall, presence of pits, plasmodesmata
(cytoplasmic bridges)
27. Plasma Membrane/Cell membrane
Semi-permeable or selectively permeable
70 to 80 Ao in thickness,
structure explained by Singer
& Nicholson in Fluid Mosaic
Model
Different Proteins are
present in viscous fluid
matrix of phospholipid bi
layer so (trilaminar)
Each phospholipid bilayer
consists of Head & Tails
Head is hydrophillic & tail is hydrophobic
Lipid bilayer is 45 A o thick, tails at rightangles to the surface
Hydrophobic ends face each other, external surface has hydrophillic ends
Quasifluid nature of lipids renders fluidity and thus lateral movement of
proteins takes place
28. Plasma Membrane contd….
Proteins are globular, of 2 types
Extrinsic & Intrinsic
Extrinsic/Peripheral are
loosely held, intrinsic are
tightly bound also called as
Integral proteins.
Some run across the entire
thickness & are called as
tunnel proteins
Tunnel proteins serve as a
passage for polar molecules
Transport of molecules across takes place passively, actively and osmosis
as well
29. Functions of Plasma Membrane
Imparts shape, protects
Regulates semi-permeability, reabsorption, excretion
& secretion.
Contributes in the formation of cell organelles
Many membranes serves as enzymes
Serves as a receptor of stimuli.
In amoeba it carries out locomotion, phagocytosis &
pinocytosis
30. Cytoplasm
Jelly like colloidal ground substance also called matrix
Outer ectoplasm, inner endoplasm
Shows streaming movements called CYCLOSIS
Composed of sugars, amino acids, t-RNA, Nucleotides, minerals, vitamins,
proteins & enzymes.
Also contains many organelles like nucleus, mitochondria.
Source of raw materials and seat of metabolic activities
As organelles like mitochondria and chloroplast have distinct functions
hence all other organelles are together termed as endomembrane
system.
32. Mitochondria
Covered by lipo-proteinaceous double
membrane.
Polymorphic -- Rod shaped, filamentous,
small spherical, granular
0.2 to 2 micrometers, average number 50
to 50,000
Mitos – thread, Chondros -- granule
Also called as power house of cell as it
generated ATP
Inner membrane folded, selectively permeable
Outer membrane is smooth, permeable, 60 AO
Folds are called cristae, contain Oxysomes/F1 particles
Cavity is filled with dense homogenous, proteinaceous fluid called matrix
Matrix shows DNA, RNA, Proteins, Lipids, Ribosomes
34. Mitochondria contd….
Electron Carrier molecules or Coenzymes are
present on the rest of the membrane.
They are the molecules of ATPase for
terminal step.
1 to 10 lacs of oxysomes are seen in a
mitochondrion
ULTRASTRUCTURE
Cytochromes
Electron carriers are as follows
Dehydrogenases Flavoproteins
35. Glucose (6C)
Pyruvic acid (3C)
NADH2 & FADH2
CO2 & H2O
Glycolysis
Cytoplasm
Kreb’s Cycle
Matrix
ETS
F1 particle
Steps in Respiration
36.
37. Endoplasmic Reticulum
Tubules are irregular branches.
Cisternae are stacks of flattened parallel sacs.
Delicately branched & anastomosing network of
ULTRASTRUCTURE
Cisternae
Vesicles are circular, may be they form chains.
Tubules Vesicles
Each cisternae, tubule, vesicle is 50 to 60 AO in thickness
Diameter of the lumen is 400 – 700 AO filled with cytoplasm.
RER & SER are two types depending on presence or absence of ribosomes.
Cytoplasm inside the lumen is called Laminal & outside it is called
non-laminal.
38. Endoplasmic Reticulum contd…
Connected at one end with nuclear membrane
& the other with plasma membrane
Functions
Provide mechanical support to cytoplasm.
Helps in maintaining position of other organelles
Glycogen & lipids are synthesized & stored in ER.
SER plays role in detoxification of liver.
It also plays a role in synthesis & secretion of lipds.
Provides precursors to Golgi Complex.
RER – Protein Synthesis, associated Ribosomes are called protein factories
It also plays a role in synthesis steroid hormones by gonad & Adrenal cortex
39. Golgi Complex
Described by Camillo Golgi (nervous tissue)
ULTRASTRUCTURE
Aggregation of few to hundreds of
membrane bound bodiesMembranes are
smooth.
Membrane limited flattened saccules
or cisternae
Vesicles -- Large vacuoles filled with
amorphous substance
Made up of cisternae/lamellae, vesicles.
Lamellae/Cisternae are closely stacked, Commonly 2 to 8 in number
Around 50 lamellae are seen in liver cells
40. Plastids
Found in Algae, Plant cells & certain Protists
Semiautonomous having DNA, & double membrane
Leucoplasts
Chromoplasts
They are of three main types
Chloroplasts
No pigments
colourless,
Store food material
Amyloplast – starch
Elaioplast – oils
Aleuroplast – proteins
Coloured contains
pigments other than
chlorophyll Yellow, Orange,
Red in colour, found in flower
& fruits Green coloured
because of
chlorophyll
41. Chloroplast
ULTRASTRUCTURE
Polymorphic, covered by double
membrane peri-stromium, made up
of lipoproteins.
Outer and inner membrane encloses
peri-plastidil space.
Internally filled with homogenous
proteinaceous matrix -- stroma
Shows network of lamellae, namely;
grana & stroma lamellae
(Intergranal lamellae/fret channels)
Grana made up of thyllakoids, containing quantasomes, pigments for
photosynthesis.
Thyllakoids are membrane bound flattened sac like structures.
Plastidome – DNA molecule which makes chloroplast semiautonomous.
42. Lysosomes
Lysosomes are single lipo-proteinacious membrane
bound bodies
Lyso=digestive Soma=body
Elliptical or highly irregular in shape contain hydrolytic
enzymes hence called Suicidal Bags
Present in animal cells (except
mammalian RBC’s)
Avg. diameter – 0.25 to 0.8
micrometer, polymorphic
Lysosomes originate from “GERL”(Golgi associated ER)
Enzymes seen in a lysosome are
Acid Phophotases
Sulphatases
Proteases
Nucleases
Lipases
Glycosidases
43. Lysosomes contd…..
They are of four types
Primary lysosome
Secondary lysosome
Residual bodies
Autophagic vacuoles
Brings about loss of tail in tadpoles
Helps in digestion of food & foreign particles.
Helps in removal of carcinogens
Functions
44. Lysosomes contd…..
Small granules, homogenous contents
Inactive storage form or ready reserves of enzymes.
Formed by fusion of primary lysosome with endocytosis vacuoles
Larger bodies, heterogenous contents
Primary lysosome
Secondary lysosome/Heterophagic granules
Primary lysosome may fuse to an unwanted organelle to form a large sac
called as autophagic vacuole or auto-phagosome
45. Secondary lysosomes containing indigestible matter are called as residual
bodies.
Residual bodies
Lysosomes contd…..
Cells with diminished physiological activity require internal re-modelling
(intracellular digestion).
Excess organelles are eliminated by autophagy
In Dead cells the enzymes are released & thus the cells are digested.
In Sperms the enzyme Hyaluronidase dissolves the protective coat of
ovum.
46. Sphaerosomes – Storage & Synthesis of fats
Few other organelles
Perioxisomes – contains enzymes for synthesis of peroxides
Glyoxysomes – micro-bodies for oxidation of fatty acids
(germinating seeds)
47. Granular organelles not bound by
membrane
Ribosomes
Sites of Protein synthesis
Found attached to ER, also in
cytoplasm, mitochondrial matrix &
chloroplast.
150-250 AO in diameter, contain
RNA & proteins.
80S Ribosomes occur in groups and
are called as polysomes or
polyribosomes.
In groups they may be arranged
linearly or in rosette shaped cluster.
48. Membrane (semi permeable - tonoplast) bound fluid (cell sap) filled spaces are
called vacuoles.
Vacuoles
Alkaloids
They may contain Amino acids
Minerals Esters
Tanins
Waste products
Water soluble pigments - Anthocyanin
Prominently found in plants (2 -3 permanent
are seen), in animal cells few & smaller.
A single large vacuole occupying 90% of
cells volume called as central vacuole can
be seen.
Cell sap of vacuole is a store house of various ions & hence hypertonic
Some seeds store organic material like proteins in small vacuoles.
Maintains turgidity, excretion & osmoregulation
They store excretory products or compounds harmful or unpalatable to
herbivores.
49. Non membranous cylindrical or
rod-shaped micro-tubular structures
in animal cells
Centrioles
Nine clusters of 3 microtubules
arranged in circular pattern.
Help in spindle formation & basal
bodies of flagella.
Dense area of cytoplasm
containing radiating microtubules.
Centrosomes contain a pair of
cylindrical structures called as
centrioles.
Diameter – 1500 to 2500 AO
length – 1600 AO to 8 microns.
50. Cilia & Flagella
Fine hair like protoplasmic
outgrowths on free surface of cell.
Generate a current for transport of
materials & locomotion.
Cilia are small and many whereas
flagella is single and long.
They consist of basal body, basal
plate and shaft.
Basal body is placed in cytoplasm and derived from centriole.
It has nine peripheral triplets of fibrils (arranged like centriole)
Central tubule is covered by central sheath.
Shaft consists of sheath and axoneme, axoneme posesses 11 fibrils 9
peripheral doublets and two single central fibrils.
Sheath is connected to one of the tubule by radial spoke, central tubules
are connected to each other by bridges.
Peripheral doublets are connected through linkers/inter-doublet bridge.
51. Non living materials in vacuoles, cytoplasm or cellwall
Cell inclusions
They may be organic/inorganic in chemical composition.
52. Discovered by Robert Brown
Nucleus
Usually cells have single nucleus, in certain cases bi nucleated
(paramoecium), & multinucleated (fungi).
Prokaryotic cell shows only chromosome and is called as
nucleoid/Genome
Such cells are called Syncytial (animals) & Coenocytes (plants)
Position
Nucleus is placed centrally usually, variations are seen
Glandular cells – basal Adipose cells – peripheral
53. Nucleus contd…
Shape & Size
Depends on the shape of the cell
Columnar cells – Ovoid /elongated
Cuboidal cells -- Spherical
Squamous epithelial cells – disc shaped
WBC’s – bi/multilobed
Vorticella – “c” shaped
Depends on volume of cell, amount of DNA & Proteins & metabolic
phase of cell
54. Nucleus contd…
It also consists nuclear pores, annuli, central granule & fibrous lamina.
Ideally a well defined nucleus shows following parts
Nuclear membrane Nucleoplasm Nucleolus
Nuclear pores Chromatin network
Nuclear membrane
Made up of two membranes, outer & inner with peri-nuclear space
7-8 nm in thickness, outer communicates with ER & inner contains
dense material called fibrous lamina.
55. Nucleus contd…
Perinuclear Space
10-70 nm filled with fluid similar to ER.
Annuli
Nuclear pores are enclosed by electron dense rings/cylinders called as
annuli.
Nuclear pore + Annulus = Pore complex
Annuli work as diaphragm while pore complex works for selective
permeability
Central Granule
Not a constant feature
56. Nucleus contd…
Fibrous lamina
Honey comb pattern made up of acid protein
Functions of nuclear envelope
Separation of nuclear material from cytoplasm
Exchange of necessary materials
Attachment of organelles like ER
Synthesizes proteins
Source membrane for other membranes
Video......VideosXIIProtein Synthesis.mpg
57. Nucleus contd…
Transparent, semisolid, granular, acidophillic matrix called as nuclear
sap/nucleoplasm/karyolymph
Contains nucleic acids, proteins, enzymes & minerals.
Nucleoplasm
Nucleolus
Spherical acidophillic body
Active cells have large nucleolus,
Cells without synthetic activity may lack nucleolus
Dense homogenous body without limiting membrane
Coiled filament called nucleolonema in matrix
Amorphous matrix, chromatin, fibrils & granules
58. Nucleus contd…
Thread like coiled & much elongated structures
Stained by Feulgen stain heterochromatin & Euchromatin
Chromatin material
Heterochromatin – dark, metabolically & genetically inert
Euchromatin – light, genetically active
Made up of nuleosomes, forms chromosomes