This bioinformatics cell contains computing resources for genome sequencing, assembly, annotation and analysis. It includes a high powered workstation and two servers for processing sequencing data from plant, fungal and bacterial genomes, as well as transcriptomes of various crops. The cell has submitted several plant and fungal genomes and bacterial sequencing data to NCBI. It has also generated barcode sequences from fish and submitted 16S and 18S rRNA sequences from bacteria and fungi respectively. The cell conducts transcriptome annotation and mapping studies on various crops to understand biological processes and molecular functions.

1. Bioinformatics Cell
WORKSTATION
Intel xeone 3.1
252GB RAM (4 Sub drive)
100TB Storage
CentOS 5.4 with Lifescope
SERVER-1
Intel xeone 3.1
64GB RAM
20TB Storage
CentOS 7 with CLC Genomic workbench
SERVER -2
Intel xeone 3.1
48GB RAM
12TB Storage
CentOS 6 with Ion torrent suite
5 PC with windows and 1 with Linux 14.2 and 1 with Bio-Linux 8

2. Sequence submitted at NCBI
Plant Genome
 Sesamum Indicum
Fungal Genome
 Puccinia arachidis
 Macrophomina phaseolina
 Sclerotium rolfsii
Bacterial Genome
 Enterobacter cloacae MR1
 Enterobacter spp. MR2
 Pseudomonas putida MR3
 Providencia rettgeri MR4
 Pantoea ananatis MR5
Transcriptome
 Cicer arietinum (4)
 Sesumum indicum (3)
 Pennisetum glaucum (4)
 Carica papaya (12)
 Ricinus communis (2)
 Arachis hypogaea (2)
55, Fish-BOLD Barcode(CO5P) Submitted
>120, 16S r RNA sequences for Bacteria
>50, 18S, 5S RNA sequences for Fungi

4. Sequence Mapping and Assembly
 MIRA
 CAP3
 SOAP
 ABYSS
 Valvet
 CLC Genome Assembler
 Ion torrent suite
 Life scope

5. Enterobacter cloacae MR1

7. SOFTWARE FACILITIES
Quality control of NGS DATA
 FAST QC Tool kit
 Printseq
 Ion torrent suit
 Life scope

8.  RAST
 MG-RAST
 Genome annotator
 GeneSAS
 Blast2Go
 NCBI Pipelines
 MAKER
 PASA
Annotation
Pseudomonas putida
MR3

9. Comparative analysis
 VISTA
 CLC
 MeGe
 RAST
 Airtimis
 ACT

12. Genomic islands of Enterobacter cloacae MR1
INTEGRATED
SIGI-HMM
ISLANDPICK

13. Transcriptome Mapping of PRSV

14. Transcriptome annotation of samples od papaya
infected with PRSV

15. Bioinformatics Cell
WORKSTATION
Intel xeone 3.1
252GB RAM (4 Sub drive)
100TB Storage
CentOS 5.4 with Lifescope
SERVER-1
Intel xeone 3.1
64GB RAM
20TB Storage
CentOS 7 with CLC Genomic workbench
SERVER -2
Intel xeone 3.1
48GB RAM
12TB Storage
CentOS 6 with Ion torrent suite
5 PC with windows and 1 with Linux 14.2 and 1 with Bio-Linux 8

16. Sequence submitted at NCBI
Plant Genome
 Sesamum Indicum
Fungal Genome
 Puccinia arachidis
 Macrophomina phaseolina
 Sclerotium rolfsii
Bacterial Genome
 Enterobacter cloacae MR1
 Enterobacter spp. MR2
 Pseudomonas putida MR3
 Providencia rettgeri MR4
 Pantoea ananatis MR5
Transcriptome
 Cicer arietinum (4)
 Sesumum indicum (3)
 Pennisetum glaucum (4)
 Carica papaya (12)
 Ricinus communis (2)
55 Fish-BOLD Barcode(CO5P)
generated for CO5P
>120, 16S r RNA sequences for
Bacteria
>50, 18S, 5S RNA sequences for Fungi

17. Transcriptome annotation of Sesamum
Biological Process

18. Transcriptome annotation of Peanut
Molecular Function

19. Transcriptome annotation of papaya infected with
PRSV
Biological process :Level2

20. Transcriptome annotation of Castor

21. Transcriptome Mapping of PRSV

22. Pearl millet

23. Perl millet

24. Perl millet

25. Perl millet

26. Perl millet

27. Bioinformatics Cell
WORKSTATION
Intel xeone 3.1
252GB RAM (4 Sub drive)
100TB Storage
CentOS 5.4 with Lifescope
SERVER-1
Intel xeone 3.1
64GB RAM
20TB Storage
CentOS 7 with CLC Genomic workbench
SERVER -2
Intel xeone 3.1
48GB RAM
12TB Storage
CentOS 6 with Ion torrent suite
5 PC with windows and 1 with Linux 14.2 and 1 with Bio-Linux 8

28. Sequence submitted at NCBI
Plant Genome
 Sesamum Indicum
Fungal Genome
 Puccinia arachidis
 Macrophomina phaseolina
 Sclerotium rolfsii
Bacterial Genome
 Enterobacter cloacae MR1
 Enterobacter spp. MR2
 Pseudomonas putida MR3
 Providencia rettgeri MR4
 Pantoea ananatis MR5
Transcriptome
 Cicer arietinum (4)
 Sesumum indicum (3)
 Pennisetum glaucum (4)
 Carica papaya (12)
 Ricinus communis (2)
55 Fish-BOLD Barcode(CO5P) Submitted
>120, 16S r RNA sequences for Bacteria
>50, 18S, 5S RNA sequences for Fungi

29. FISH cytochrome oxidase subunit I gene submitted
to Barcode of Life Database