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THE CALL OF THE WILD - 
tracking an indirect defence trait in maize 
TOBY BRUCE 
Rothamsted Research, UK
Domesticated from Zea mays ssp. parviglumis 
8,700 years ago 
Photo by Nicolle Rager Fuller, NSF
High yielding 
varieties 
(HYVs) bred 
from landraces 
Nature Genetics 44, 808–811 (2012)
African smallholders 
mostly grow 
LANDRACES not HYVs 
Why?
HYPOTHESIS: Landraces are MORE RESISTANT TO 
STRESSES such as stemborer attack…
are parasitoids more attracted to 
HIPVs from landraces?
± 
24h
Bioassay of response to volatiles from plants WITH and 
WITHOUT eggs
Parasitoid response - landraces 
ATTRACTED to plants with eggs 
Tamiru et al. (2011) Ecology Letters 14: 1075
Volatile profiles - landraces 
INDUCTION with plants with eggs 
(a) (E)-ocimene, (b) (R)-linalool, (c) (E)-4,8-dimethyl-1,3,7, nonatriene (DMNT), (d) methyl salicylate, 
(e) decanal, (f) methyleugenol, (g) (E)-(1R,9S)-caryophyllene, (h) (E)-β-farnesene, (i) (E,E)-4,8,12- 
trimethyl-1,3,7,11-tridecatetraene (TMTT). 
Tamiru et al. (2011) Ecology Letters 14: 1075
Parasitoid response – commercial hybrids 
Commercial hybrid lines 
NOT attracted to plants with eggs 
Tamiru et al. (2011) Ecology Letters 14: 1075
Volatile profiles – standard commercial hybrids 
NO induction with plants with eggs 
(a) (E)-ocimene, (b) (R)-linalool, (c) (E)-4,8-dimethyl-1,3,7, nonatriene (DMNT), (d) methyl salicylate, 
(e) decanal, (f) methyleugenol, (g) (E)-(1R,9S)-caryophyllene, (h) (E)-β-farnesene, (i) (E,E)-4,8,12- 
trimethyl-1,3,7,11-tridecatetraene (TMTT). 
Tamiru et al. (2011) Ecology Letters 14: 1075
Ethanol extract of elicitor 
Effect is systemic + ELICITOR involved 
Tamiru et al. (2011) Ecology Letters 14: 1075
African landraces 
a = 2-heptanol (stereochemistry undefined), b = decane, c = (R)-limonene, d = methyl benzoate, e = (R)-linalool, 
f = (E)-4,8-dimethyl-1,3,7-nonatriene, g = cis-p-mentha-2,8-dien-3-ol*, h = methyl salicylate, i = decanal, j = 2,3- 
dimethylacetophenone*, k = neryl acetate, l = eugenol, m = copaene*, n = germacrene D* 
Tamiru et al. (2012) J. Chem. Ecol. 38: 213
New Project: markers for the trait
Egg induced HIPV emission trait only found in 
2 out of 44 
commercial hybrid maize lines tested so far
Landraces 
Reference genome 
(B-73 maize lines)
Why is this indirect defence trait 
so rare in HYV lines ?
Could it be the legacy of selecting for 
yield and quality in a pesticide treated 
background?
Identifying 
linked 
molecular 
markers using 
GWAS (genome-wide 
association 
study) 
maize
Parasitoid attraction 
Quantile-quantile (QQ) –plot of P-values for both parasitoid attraction to the volatiles induced 
and volatiles induction in response to exposure to the parasitoids. The Y-axis is the observed 
negative base 10 logarithm of the P-values, and the X-axis is the expected observed negative 
base 10 logarithm of the P- values under the assumption that the P-values follow a uniform [0,1] 
distribution. The dotted lines show the 95% confidence interval for the QQ-plot under the null 
hypothesis of no association between the SNP and the trait.
Associated SNPs for 
Parasitoid attraction 
	 
Manhattan plot 
generated using 
137940 SNPs in 
preliminary GWAS 
analysis for both the 
trait parasitoid 
attraction and 
volatile induction. 
The X-axis is the 
genomic position of 
the SNPs in the 
genome, and the Y-axis 
is the negative 
log base 10 of the P-values. 
Each 
chromosome is 
colored differently. 
SNPs with stronger 
associations (based 
on bonferronoi 
correction) with the 
trait will have a 
larger Y-coordinate 
value denoted by 
parallel in light green 
color 
Associated 
SNPs for 
Volatile 
induction
Conclusion 
We are developing molecular markers 
for a valuable indirect defence trait to 
facilitate breeding via MAS (marker 
assisted selection) of maize that has 
BOTH this trait and higher yield…
The call of the wild: tracking an indirect defence trait in maize

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The call of the wild: tracking an indirect defence trait in maize

  • 1. THE CALL OF THE WILD - tracking an indirect defence trait in maize TOBY BRUCE Rothamsted Research, UK
  • 2. Domesticated from Zea mays ssp. parviglumis 8,700 years ago Photo by Nicolle Rager Fuller, NSF
  • 3. High yielding varieties (HYVs) bred from landraces Nature Genetics 44, 808–811 (2012)
  • 4. African smallholders mostly grow LANDRACES not HYVs Why?
  • 5. HYPOTHESIS: Landraces are MORE RESISTANT TO STRESSES such as stemborer attack…
  • 6. are parasitoids more attracted to HIPVs from landraces?
  • 8.
  • 9. Bioassay of response to volatiles from plants WITH and WITHOUT eggs
  • 10. Parasitoid response - landraces ATTRACTED to plants with eggs Tamiru et al. (2011) Ecology Letters 14: 1075
  • 11. Volatile profiles - landraces INDUCTION with plants with eggs (a) (E)-ocimene, (b) (R)-linalool, (c) (E)-4,8-dimethyl-1,3,7, nonatriene (DMNT), (d) methyl salicylate, (e) decanal, (f) methyleugenol, (g) (E)-(1R,9S)-caryophyllene, (h) (E)-β-farnesene, (i) (E,E)-4,8,12- trimethyl-1,3,7,11-tridecatetraene (TMTT). Tamiru et al. (2011) Ecology Letters 14: 1075
  • 12. Parasitoid response – commercial hybrids Commercial hybrid lines NOT attracted to plants with eggs Tamiru et al. (2011) Ecology Letters 14: 1075
  • 13. Volatile profiles – standard commercial hybrids NO induction with plants with eggs (a) (E)-ocimene, (b) (R)-linalool, (c) (E)-4,8-dimethyl-1,3,7, nonatriene (DMNT), (d) methyl salicylate, (e) decanal, (f) methyleugenol, (g) (E)-(1R,9S)-caryophyllene, (h) (E)-β-farnesene, (i) (E,E)-4,8,12- trimethyl-1,3,7,11-tridecatetraene (TMTT). Tamiru et al. (2011) Ecology Letters 14: 1075
  • 14. Ethanol extract of elicitor Effect is systemic + ELICITOR involved Tamiru et al. (2011) Ecology Letters 14: 1075
  • 15. African landraces a = 2-heptanol (stereochemistry undefined), b = decane, c = (R)-limonene, d = methyl benzoate, e = (R)-linalool, f = (E)-4,8-dimethyl-1,3,7-nonatriene, g = cis-p-mentha-2,8-dien-3-ol*, h = methyl salicylate, i = decanal, j = 2,3- dimethylacetophenone*, k = neryl acetate, l = eugenol, m = copaene*, n = germacrene D* Tamiru et al. (2012) J. Chem. Ecol. 38: 213
  • 16. New Project: markers for the trait
  • 17.
  • 18. Egg induced HIPV emission trait only found in 2 out of 44 commercial hybrid maize lines tested so far
  • 19.
  • 20. Landraces Reference genome (B-73 maize lines)
  • 21. Why is this indirect defence trait so rare in HYV lines ?
  • 22. Could it be the legacy of selecting for yield and quality in a pesticide treated background?
  • 23. Identifying linked molecular markers using GWAS (genome-wide association study) maize
  • 24. Parasitoid attraction Quantile-quantile (QQ) –plot of P-values for both parasitoid attraction to the volatiles induced and volatiles induction in response to exposure to the parasitoids. The Y-axis is the observed negative base 10 logarithm of the P-values, and the X-axis is the expected observed negative base 10 logarithm of the P- values under the assumption that the P-values follow a uniform [0,1] distribution. The dotted lines show the 95% confidence interval for the QQ-plot under the null hypothesis of no association between the SNP and the trait.
  • 25. Associated SNPs for Parasitoid attraction Manhattan plot generated using 137940 SNPs in preliminary GWAS analysis for both the trait parasitoid attraction and volatile induction. The X-axis is the genomic position of the SNPs in the genome, and the Y-axis is the negative log base 10 of the P-values. Each chromosome is colored differently. SNPs with stronger associations (based on bonferronoi correction) with the trait will have a larger Y-coordinate value denoted by parallel in light green color Associated SNPs for Volatile induction
  • 26. Conclusion We are developing molecular markers for a valuable indirect defence trait to facilitate breeding via MAS (marker assisted selection) of maize that has BOTH this trait and higher yield…