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MICROSCOPIC TECHNIQUES
TYPES
1. OPTICAL MICROSCOPY
- Conventional light microscopy
- Fluorescence microscopy
- Confocal microscopy
- Phase-contrast microscopy
Contd…
3. ELECTRON MICROSCOPY
Scanning electron microscopy (SEM)
Transmission electron microscopy (TEM)
Source: www.microscope .com
OPTICAL MICROSCOPY
 The optical microscope, often referred to as light
microscope, is a type of microscope which
uses visible light and a system of lenses to magnify
images of small samples.
 It was first created by ROBERT HOOKE in 1665.
 There are two basic types of optical microscopes:
simple microscopes and compound microscopes.
 A simple microscope uses a single lens for
magnification, such as a magnifying glass,
 compound microscope uses several lenses to
enhance the magnification of an object.
SIMPLE
MICROSCOPE
COMPOUND
MICROSCOPE
2.COMPOUND MICROSCOPE
 A high power or compound
microscope achieves higher
levels of magnification than a
stereo or low power microscope.
 It is used to view smaller
specimens such as cell structures
which cannot be seen at lower
levels of magnification.
Essentially, a compound
microscope consists of structural
and optical components.
 Light is passed through the
sample (called transmitted light
illumination). Larger objects
need to be sliced to allow this to
happen efficiently
Source: www.microscope.com/education
IMAGES UNDER COMPOUND MICROSCOPE
Source: www.microscopeworld.com
3. CAMERA LUCIDA
Helps in drawing microscope
images of objects on paper.
It works on simple optical
principle reflecting beam of light
through a prism and a plane
mirror.
 The microscopic image of the
object is reflected by the prism on
to the plane mirror and there from
the image is reflected on to the
plane paper.

The observer moves the pencil
on the lines of the image and
draws a correct and faithful figure
of the object on the paper.
Source: www.bgs.ac.uk.com
Source: www.research gate.com
A CAMERA LUCIDA OF HOLOTYPE OF FOSSIL PLANTS
4. STEREO-MICROSCOPE
Source: www.microscope .com
 The stereo- or dissecting
microscope is an optical microscope
variant designed for observation
with low magnification (2 - 100x)
using incident light illumination (light
reflected off the surface of the sample
is observed by the user), although it
can also be combined with transmitted
light in some instruments.
It uses two separate optical
paths with two objectives and two
eyepieces to provide slightly different
viewing angles to the left and right
eyes.
In this way it allows a three-
dimensional visualization of the
sample.
 Great working distance and
depth of field are important
qualities for this type of
microscope, allowing large
specimens such as small
animals, plants and organs to
be viewed with most parts in
focus at the same time. In
addition to the ocular and
objective lens,
Stereomicroscopes typically
contain:
1. Focus wheel
2. Light source
3. Base
4. Ocular (eyepiece) lenses
Many stereomicroscopes also
have adjustable magnification.
USES
Source: www.edutrade .com
PHASE CONTRAST MICROSCOPE
• Converts phase shifts in
light passing through a
transparent specimen to
brightness changes in
the image.
• Details in the image
appear darker/brighter
against a background
• Colorless and
transparent specimen,
such as living cells and
microorganisms
Source: www.nobelprize.org
With regard to periodic movements,
such as sinusoidal waves, the phase
represents the portion of the wave
that has elapsed relative to the origin.
Light is also an oscillation and the
phase changes, when passing through
an object, between the light that has
passed through (diffracted light) and
the remaining light (direct light).
PRINCIPLE
 Transparent cells can be observed without staining them
because the phase contrast can be converted into
brightness differences.
- because it is not necessary to stain cells, cell division and
other processes can be observed in a living state.
USES Source: microscopeworld.com
FLUORESCENCE MICROSCOPE
 Fluorescence is the
property of some
atoms and molecules to
absorb light at a
particular wavelength
and to subsequently
emit light of longer
wavelength
 It is an optical
microscope that uses
fluorescence and
phosphorescence to
study properties of
organic and inorganic
substance
Source: microscopeworld.com
 The specimen is
illuminated with light of a
specific wavelength which
is absorbed by the
fluorophores, causing
them to emit light of
longer wavelengths
 The illuminated light is
separated from the much
weaker emitted
fluorescence through the
use of a spectral emission
filter
PRINCIPLE
DICHROTIC
FILTER
Source: www.pnta.com
USES
• Especially useful in
the examination of
biological samples:
• Identify the
particular molecules
in complex structure
(e.g. cells)
• Locate the spatial
distribution of
particular molecules
in the structure
• Biochemical
dynamics
Source: projects .ncsu. edu
Source: pinterest.com
CONFOCAL MICROSCOPE
 Works by passing a
laser beam through a
light source aperture
which is then focused
by an objective lens
into a small area on
the surface of sample
 An image is built up
pixel-by-pixel by
collecting the emitted
photons from the
fluorophores
(fluorescent molecule)
in the sample. Source: www. aperturegames.com
PRINCIPLE
The CLSM works by
passing a laser beam
through a light source
aperture which is then
focused by an objective
lens into a small area on
the surface of your
sample and an image is
built up pixel-by-pixel
by collecting the
emitted photons from
the fluorophores in the
sample
Source: Molecular expressions, science optics and you
USES
 It is being exploited to
study a wide range of
pharmaceutical systems
including phase-separated
polymers, colloidal systems,
microspheres, pellets,
tablets, film coatings,
hydrophilic matrices, and
chromatographic
stationary phases, detecting
molecules.
CONFOCAL LASER SCANNING MICROSCOPY for detection of reactive nitrogen species in
olive leaves. In control plants, the localization of endogenous NO by CLSM with DAF-2 DA showed
an intense green fluorescence in vascular tissues (xylem and phloem) and a smaller intensity in the
upper and lower epidermal cells . Under salt stress the green fluorescence was homogenously
intensified in all cell types. Source: www. sciencedirect.com
ELECTRON MICROSCOPY
 An electron microscope uses a
beam of accelerated electrons
as source of accelerated
electrons as a source of
illumination.
 Electron microscopes have a
high resolving power than
light microscopes and can
reveal the structure of small
objects.
 It offers unique possibilities to
gain insight into
Structure
Topology
Morphology
Composition of materials
Source: en.wikipedia.org
TYPES OF ELECTRON MICROSCOPES
2. SCANNING
ELECTRON
MICROSCOPE
1. TRANSMISSION
ELECTRON
MICROSCOPE
8.1.TRANSMISSION ELECTRON MICROSCOPE (TEM)
 Transmission electron
microscope is a microscopy
technique whereby a beam of
electrons is transmitted
through an ultra thin
specimen, interacting with
the specimen as it passes
through.
 An image is formed from the
interaction of electrons
transmitted through the
specimen; the image is
magnified and focused on to
an imaging device.
Source: www.slideshare.net.com
PRINCIPLE
Source: www.slideshare.net.com
USES
Source: www.gettyimages. com
The main application of
transmission electron
microscopy is to provide high
magnification images of
internal structure of a sample.
TEM can visualize the
complexity of the cells and
show cellular structures.
 It can identify small
organelles and determine the
structural difference or change
in tissues under different
conditions
 A scanning electron
microscope is a type of
microscope that produces
images of a sample by
scanning it with a focused
beam of electron.
 The electrons interact
with atoms in the sample,
producing various signals
that contain information
about samples surface
topography and
composition.
Source: www.alamy.com
8.2. SCANNING ELECTRON MICROSCOPE
SEM
Source: www.madrat.com
USES
 Use for the live specimen
examination.
 Use for the visualization of
intra cellular changes.
 Use for 3D tissue imaging.
For investigation of virus
structure
 Can analyze surface fractures,
provide quantitative chemical
analysis and identify crystalline
structures
Source: www.slideshare.net.com

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Microscopic techniques

  • 2. TYPES 1. OPTICAL MICROSCOPY - Conventional light microscopy - Fluorescence microscopy - Confocal microscopy - Phase-contrast microscopy
  • 3. Contd… 3. ELECTRON MICROSCOPY Scanning electron microscopy (SEM) Transmission electron microscopy (TEM) Source: www.microscope .com
  • 4. OPTICAL MICROSCOPY  The optical microscope, often referred to as light microscope, is a type of microscope which uses visible light and a system of lenses to magnify images of small samples.  It was first created by ROBERT HOOKE in 1665.  There are two basic types of optical microscopes: simple microscopes and compound microscopes.  A simple microscope uses a single lens for magnification, such as a magnifying glass,  compound microscope uses several lenses to enhance the magnification of an object.
  • 6. 2.COMPOUND MICROSCOPE  A high power or compound microscope achieves higher levels of magnification than a stereo or low power microscope.  It is used to view smaller specimens such as cell structures which cannot be seen at lower levels of magnification. Essentially, a compound microscope consists of structural and optical components.  Light is passed through the sample (called transmitted light illumination). Larger objects need to be sliced to allow this to happen efficiently Source: www.microscope.com/education
  • 7. IMAGES UNDER COMPOUND MICROSCOPE Source: www.microscopeworld.com
  • 8. 3. CAMERA LUCIDA Helps in drawing microscope images of objects on paper. It works on simple optical principle reflecting beam of light through a prism and a plane mirror.  The microscopic image of the object is reflected by the prism on to the plane mirror and there from the image is reflected on to the plane paper.  The observer moves the pencil on the lines of the image and draws a correct and faithful figure of the object on the paper. Source: www.bgs.ac.uk.com
  • 9. Source: www.research gate.com A CAMERA LUCIDA OF HOLOTYPE OF FOSSIL PLANTS
  • 10. 4. STEREO-MICROSCOPE Source: www.microscope .com  The stereo- or dissecting microscope is an optical microscope variant designed for observation with low magnification (2 - 100x) using incident light illumination (light reflected off the surface of the sample is observed by the user), although it can also be combined with transmitted light in some instruments. It uses two separate optical paths with two objectives and two eyepieces to provide slightly different viewing angles to the left and right eyes. In this way it allows a three- dimensional visualization of the sample.
  • 11.  Great working distance and depth of field are important qualities for this type of microscope, allowing large specimens such as small animals, plants and organs to be viewed with most parts in focus at the same time. In addition to the ocular and objective lens, Stereomicroscopes typically contain: 1. Focus wheel 2. Light source 3. Base 4. Ocular (eyepiece) lenses Many stereomicroscopes also have adjustable magnification. USES Source: www.edutrade .com
  • 12. PHASE CONTRAST MICROSCOPE • Converts phase shifts in light passing through a transparent specimen to brightness changes in the image. • Details in the image appear darker/brighter against a background • Colorless and transparent specimen, such as living cells and microorganisms Source: www.nobelprize.org
  • 13. With regard to periodic movements, such as sinusoidal waves, the phase represents the portion of the wave that has elapsed relative to the origin. Light is also an oscillation and the phase changes, when passing through an object, between the light that has passed through (diffracted light) and the remaining light (direct light). PRINCIPLE  Transparent cells can be observed without staining them because the phase contrast can be converted into brightness differences. - because it is not necessary to stain cells, cell division and other processes can be observed in a living state. USES Source: microscopeworld.com
  • 14. FLUORESCENCE MICROSCOPE  Fluorescence is the property of some atoms and molecules to absorb light at a particular wavelength and to subsequently emit light of longer wavelength  It is an optical microscope that uses fluorescence and phosphorescence to study properties of organic and inorganic substance Source: microscopeworld.com
  • 15.  The specimen is illuminated with light of a specific wavelength which is absorbed by the fluorophores, causing them to emit light of longer wavelengths  The illuminated light is separated from the much weaker emitted fluorescence through the use of a spectral emission filter PRINCIPLE DICHROTIC FILTER Source: www.pnta.com
  • 16. USES • Especially useful in the examination of biological samples: • Identify the particular molecules in complex structure (e.g. cells) • Locate the spatial distribution of particular molecules in the structure • Biochemical dynamics Source: projects .ncsu. edu Source: pinterest.com
  • 17. CONFOCAL MICROSCOPE  Works by passing a laser beam through a light source aperture which is then focused by an objective lens into a small area on the surface of sample  An image is built up pixel-by-pixel by collecting the emitted photons from the fluorophores (fluorescent molecule) in the sample. Source: www. aperturegames.com
  • 18. PRINCIPLE The CLSM works by passing a laser beam through a light source aperture which is then focused by an objective lens into a small area on the surface of your sample and an image is built up pixel-by-pixel by collecting the emitted photons from the fluorophores in the sample Source: Molecular expressions, science optics and you
  • 19. USES  It is being exploited to study a wide range of pharmaceutical systems including phase-separated polymers, colloidal systems, microspheres, pellets, tablets, film coatings, hydrophilic matrices, and chromatographic stationary phases, detecting molecules. CONFOCAL LASER SCANNING MICROSCOPY for detection of reactive nitrogen species in olive leaves. In control plants, the localization of endogenous NO by CLSM with DAF-2 DA showed an intense green fluorescence in vascular tissues (xylem and phloem) and a smaller intensity in the upper and lower epidermal cells . Under salt stress the green fluorescence was homogenously intensified in all cell types. Source: www. sciencedirect.com
  • 20. ELECTRON MICROSCOPY  An electron microscope uses a beam of accelerated electrons as source of accelerated electrons as a source of illumination.  Electron microscopes have a high resolving power than light microscopes and can reveal the structure of small objects.  It offers unique possibilities to gain insight into Structure Topology Morphology Composition of materials Source: en.wikipedia.org
  • 21. TYPES OF ELECTRON MICROSCOPES 2. SCANNING ELECTRON MICROSCOPE 1. TRANSMISSION ELECTRON MICROSCOPE
  • 22. 8.1.TRANSMISSION ELECTRON MICROSCOPE (TEM)  Transmission electron microscope is a microscopy technique whereby a beam of electrons is transmitted through an ultra thin specimen, interacting with the specimen as it passes through.  An image is formed from the interaction of electrons transmitted through the specimen; the image is magnified and focused on to an imaging device. Source: www.slideshare.net.com
  • 24. USES Source: www.gettyimages. com The main application of transmission electron microscopy is to provide high magnification images of internal structure of a sample. TEM can visualize the complexity of the cells and show cellular structures.  It can identify small organelles and determine the structural difference or change in tissues under different conditions
  • 25.  A scanning electron microscope is a type of microscope that produces images of a sample by scanning it with a focused beam of electron.  The electrons interact with atoms in the sample, producing various signals that contain information about samples surface topography and composition. Source: www.alamy.com 8.2. SCANNING ELECTRON MICROSCOPE
  • 26. SEM
  • 28. USES  Use for the live specimen examination.  Use for the visualization of intra cellular changes.  Use for 3D tissue imaging. For investigation of virus structure  Can analyze surface fractures, provide quantitative chemical analysis and identify crystalline structures Source: www.slideshare.net.com