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TNAU Seed Portal

                      A.Dineshwaran          BTI-09-030




   Under the guidance of Dr.N.Senthil, Professor.


TNAU Genomics – http://www.tnaugenomics.com/seedportal
Introduction
               Seed

                                             • Seed play an important role
              Quality



                                               in any technology.
             TNAU
 Varietal
characters   Seed
                          Indian Minimum
                          Seed Certication
                                             • No one stop database
             Portal          Standards
                                               available.


                DUS
             Characters




             TNAU Genomics – http://www.tnaugenomics.com/seedportal
Review on Other Databases
• Lacks user             • Lacks
  friendly                 Varietal         •   With a view to
  interface                Search               provide a user
                                                friendly interface
Seednet.gov.in
                         Seed                   for users, TNAU
                                                Seed Portal has
                         TamilNadu

                                                been developed.
             • Overcomes
               the defects                  •    With a view to
               in existing                       provide varietal
               databases                         search for paddy.
             TNAU Seed
             Portal


          TNAU Genomics – http://www.tnaugenomics.com/seedportal
Varietal Identification
•   There are many varieties of crop available.

•   Market forces are increasingly demanding
    pure (or single) varieties of grains for
    specific purposes.

• This means varietal testing must become a
  standard practice in order to guarantee
  the sale of grain.




           TNAU Genomics – http://www.tnaugenomics.com/seedportal
Marker Fingerprint Identification

Many drawbacks such as
influence of environment
on trait expression.                            Marker
                                                Fingerprint
                                                Identification


Morphological Descriptors

         TNAU Genomics – http://www.tnaugenomics.com/seedportal
SSR Marker Fingerprinting



                                    SSR Markers




                                                                Results
  Varieties




                                                  • RM5638,               • PCR Products are
              • ADT37,
                                                  • RM3515,                 run on agarose Gel
              • ADT43,                                                      and result is
              • ADT46,                            • RM231,
                                                                            documented.
              • ASD16,                            • RM252,
              • Bhavani,                          • RM163,
              • CO43, CO48,                       • RM225,
              • CO49,                             • RM6728,
              • CO50,                             • RM8226,
              • CR1009,                           • RM219,
              • IR20,                             • RM228,
              • IR50 and                          • RM144 and
              • White Ponni.                      • RM511.




For the easy access to the documented data , an database has been developed which can
be updated

                   TNAU Genomics – http://www.tnaugenomics.com/seedportal
Database Schema
                             TNAU Genomics

 HTML
                             TNAU Seed Portal




 PHP                              Resources               Varietal Search
        Indian Minimum
        Seed Certification
             Search

MYSQL
         Morphological                                  Varietal SSR
                                 DUS Characters
          Characters                                    Marker Data


        TNAU Genomics – http://www.tnaugenomics.com/seedportal
Page View – Site Analytics




TNAU Genomics – http://www.tnaugenomics.com/seedportal
Page View – Search Page




TNAU Genomics – http://www.tnaugenomics.com/seedportal
Page View- Result




TNAU Genomics – http://www.tnaugenomics.com/seedportal
Page View – Marker data page




TNAU Genomics – http://www.tnaugenomics.com/seedportal
Future Development
• TNAU Seed Portal is an is an organized database that provides the
  information about all crops seed standards, Varietal characters, DUS
  characters seed production, processing, testing techniques and
  seed legislations.
• Since, SSR Marker Fingerprinting data enables the researchers to
  classify the various types of cultivars in a efficient way. It can lead to
  seed purity.
• Due to recent developments in IT, steps has been taken to make the
  database available to the users in the form of Android application
  so that data can be accessed using mobile phones.
• The dynamic nature of the PHP enables us for the further updates
  in marker data.
• More SSR markers for each chromosome of paddy will be added in
  the days to come.


           TNAU Genomics – http://www.tnaugenomics.com/seedportal
Reference
• Tunwar N.S. ,Singh S.V .Indian Minimum Seed Certification
  Standards ;The central seed certification board July 1988.
• Mario Latendresse and Peter D. Karp (2010). An advanced
  web query interface for biological databases. Database, Vol.
  2010.
• Brad Bulger, Jay Greenspan and, David Wall (2004).
  MySQL/PHP Applications. Wiley Publications.
• http://www.php.net/
• http://www.tnaugenomics.com/duster/



         TNAU Genomics – http://www.tnaugenomics.com/seedportal

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TNAU Seed portal- Tamil Nadu Agricultural University Seed portal

  • 1. TNAU Seed Portal A.Dineshwaran BTI-09-030 Under the guidance of Dr.N.Senthil, Professor. TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 2. Introduction Seed • Seed play an important role Quality in any technology. TNAU Varietal characters Seed Indian Minimum Seed Certication • No one stop database Portal Standards available. DUS Characters TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 3. Review on Other Databases • Lacks user • Lacks friendly Varietal • With a view to interface Search provide a user friendly interface Seednet.gov.in Seed for users, TNAU Seed Portal has TamilNadu been developed. • Overcomes the defects • With a view to in existing provide varietal databases search for paddy. TNAU Seed Portal TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 4. Varietal Identification • There are many varieties of crop available. • Market forces are increasingly demanding pure (or single) varieties of grains for specific purposes. • This means varietal testing must become a standard practice in order to guarantee the sale of grain. TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 5. Marker Fingerprint Identification Many drawbacks such as influence of environment on trait expression. Marker Fingerprint Identification Morphological Descriptors TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 6. SSR Marker Fingerprinting SSR Markers Results Varieties • RM5638, • PCR Products are • ADT37, • RM3515, run on agarose Gel • ADT43, and result is • ADT46, • RM231, documented. • ASD16, • RM252, • Bhavani, • RM163, • CO43, CO48, • RM225, • CO49, • RM6728, • CO50, • RM8226, • CR1009, • RM219, • IR20, • RM228, • IR50 and • RM144 and • White Ponni. • RM511. For the easy access to the documented data , an database has been developed which can be updated TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 7. Database Schema TNAU Genomics HTML TNAU Seed Portal PHP Resources Varietal Search Indian Minimum Seed Certification Search MYSQL Morphological Varietal SSR DUS Characters Characters Marker Data TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 8. Page View – Site Analytics TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 9. Page View – Search Page TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 10. Page View- Result TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 11. Page View – Marker data page TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 12. Future Development • TNAU Seed Portal is an is an organized database that provides the information about all crops seed standards, Varietal characters, DUS characters seed production, processing, testing techniques and seed legislations. • Since, SSR Marker Fingerprinting data enables the researchers to classify the various types of cultivars in a efficient way. It can lead to seed purity. • Due to recent developments in IT, steps has been taken to make the database available to the users in the form of Android application so that data can be accessed using mobile phones. • The dynamic nature of the PHP enables us for the further updates in marker data. • More SSR markers for each chromosome of paddy will be added in the days to come. TNAU Genomics – http://www.tnaugenomics.com/seedportal
  • 13. Reference • Tunwar N.S. ,Singh S.V .Indian Minimum Seed Certification Standards ;The central seed certification board July 1988. • Mario Latendresse and Peter D. Karp (2010). An advanced web query interface for biological databases. Database, Vol. 2010. • Brad Bulger, Jay Greenspan and, David Wall (2004). MySQL/PHP Applications. Wiley Publications. • http://www.php.net/ • http://www.tnaugenomics.com/duster/ TNAU Genomics – http://www.tnaugenomics.com/seedportal

Editor's Notes

  1. The vast variety of information regarding seeds is scattered and no such organized one stop database available at present
  2. Growers take advantage of these differences and choose the specific varieties that best suit the requirements and conditions of their farm and the market.
  3. Growers take advantage of these differences and choose the specific varieties that best suit the requirements and conditions of their farm and the market.