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TTrreeeess 
FFeeeedd 
SSooiill MMiiccrroobbeess 
a 
presentatio 
n by 
Conor Flynn
General Idea: Linking above- and 
below-ground processes 
•Phloem and xylem 
•Rhizodeposition and Litterfall 
•Priming Effect 
•Girdling 
•Girdling severs phloem, eliminates 
rhizodeposition, tests Priming Effect 
•Weintraub MN, Scott-Denton LE, Schmidt SK, Monson 
RK. The effects of tree rhizodeposition on soil exoenzyme 
activity, dissolved organic carbon, and nutrient 
availability in a subalpine forest ecosystem. Oecologia. 
2007;154(2):327–338.
Site Description 
• W of Denver, CO 
• 3,000 meters above sea level 
• Lodgepole Pine (Pinus contorta) 
• Sandy Inceptisol w/ thin organic 
layer 
• Girdled in July 2004 
• Photosynthesis begins mid-April 
2005
Materials + Methods 
NNuuttrriieenntt:: hhoommooggeenniizzeedd wwiitthh 00..55 MM 
ppoottaassssiiuumm ssuullffaattee ((KK22SSOO44)),, tthheenn vvaaccuuuumm-- 
ffiilltteerreedd aanndd cchheemmiiccaallllyy aannaallyyzzeedd ffoorr 
CCaarrbboonn aanndd NNiittrrooggeenn.. 
BBiioommaassss:: cchhlloorrooffoorrmm ffuummiiggaattiioonn,, tthheenn aass 
aabboovvee.. SSuubbttrraacctt.. 
EExxttrraacceelllluullaarr EEnnzzyymmee:: hhoommooggeenniizzeedd iinn ppHH 
55..00 bbuuffffeerr,, iinnccuubbaatteedd iinn fflluuoorriimmeettrriicc 
aassssaayyss wwiitthh tthheeiirr ssuubbssttrraattee;; aaccttiivviittiieess aarree 
nnmmooll ooff rreeaaccttiioonn pprroodduucctt ppeerr hhoouurr ppeerr gg 
ooff ddrryy ssooiill..
Results: Extracellular Enzymes I 
• Hydrolysis of chitin • Mineralizes organic P
Results: Extracellular Enzymes II 
• BG: Cellobiose 
• AG: Starch 
• BX: Xylans 
• BC: Degrades cellulose to Cellobiose
Results: Extracellular Enzymes III 
•Peroxidase: can degrade 
lignin
Results: Microbial Carbon and Nitrogen
Results: Extracellular Enzymes IV 
•LAP: hydrolysis of amino 
acids from peptides
Conclusions 
•After ggiirrddlliinngg,, rroooottss bbeeggiinn ttoo ddiiee 
•FFiirrsstt mmyyccoorrrrhhiizzaaee ddeeccaayy,, tthheenn llaabbiillee ssttaarrcchheess,, tthheenn cceelllluulloossee,, aanndd ffiinnaallllyy 
lliiggnniinn ((~~66 mmoonntthhss)).. 
•In healthy forests…. 
•Microbes benefit from rhizodeposition in spring, (while soil still covered in 
snow) and increase in microbial biomass. 
•Rhizodeposits are probably sugars, low in N. 
•Microbes must immobilize N from proteins in soil. 
•When this labile microbial N is mineralized it will result in increased N 
availability for the trees.
Discussion: Trees Feed Soil Microbes… 
And Vice Versa!

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Trees Feed Microbes (and Microbes Feed the Trees)

  • 1. TTrreeeess FFeeeedd SSooiill MMiiccrroobbeess a presentatio n by Conor Flynn
  • 2. General Idea: Linking above- and below-ground processes •Phloem and xylem •Rhizodeposition and Litterfall •Priming Effect •Girdling •Girdling severs phloem, eliminates rhizodeposition, tests Priming Effect •Weintraub MN, Scott-Denton LE, Schmidt SK, Monson RK. The effects of tree rhizodeposition on soil exoenzyme activity, dissolved organic carbon, and nutrient availability in a subalpine forest ecosystem. Oecologia. 2007;154(2):327–338.
  • 3. Site Description • W of Denver, CO • 3,000 meters above sea level • Lodgepole Pine (Pinus contorta) • Sandy Inceptisol w/ thin organic layer • Girdled in July 2004 • Photosynthesis begins mid-April 2005
  • 4. Materials + Methods NNuuttrriieenntt:: hhoommooggeenniizzeedd wwiitthh 00..55 MM ppoottaassssiiuumm ssuullffaattee ((KK22SSOO44)),, tthheenn vvaaccuuuumm-- ffiilltteerreedd aanndd cchheemmiiccaallllyy aannaallyyzzeedd ffoorr CCaarrbboonn aanndd NNiittrrooggeenn.. BBiioommaassss:: cchhlloorrooffoorrmm ffuummiiggaattiioonn,, tthheenn aass aabboovvee.. SSuubbttrraacctt.. EExxttrraacceelllluullaarr EEnnzzyymmee:: hhoommooggeenniizzeedd iinn ppHH 55..00 bbuuffffeerr,, iinnccuubbaatteedd iinn fflluuoorriimmeettrriicc aassssaayyss wwiitthh tthheeiirr ssuubbssttrraattee;; aaccttiivviittiieess aarree nnmmooll ooff rreeaaccttiioonn pprroodduucctt ppeerr hhoouurr ppeerr gg ooff ddrryy ssooiill..
  • 5. Results: Extracellular Enzymes I • Hydrolysis of chitin • Mineralizes organic P
  • 6. Results: Extracellular Enzymes II • BG: Cellobiose • AG: Starch • BX: Xylans • BC: Degrades cellulose to Cellobiose
  • 7. Results: Extracellular Enzymes III •Peroxidase: can degrade lignin
  • 9. Results: Extracellular Enzymes IV •LAP: hydrolysis of amino acids from peptides
  • 10. Conclusions •After ggiirrddlliinngg,, rroooottss bbeeggiinn ttoo ddiiee •FFiirrsstt mmyyccoorrrrhhiizzaaee ddeeccaayy,, tthheenn llaabbiillee ssttaarrcchheess,, tthheenn cceelllluulloossee,, aanndd ffiinnaallllyy lliiggnniinn ((~~66 mmoonntthhss)).. •In healthy forests…. •Microbes benefit from rhizodeposition in spring, (while soil still covered in snow) and increase in microbial biomass. •Rhizodeposits are probably sugars, low in N. •Microbes must immobilize N from proteins in soil. •When this labile microbial N is mineralized it will result in increased N availability for the trees.
  • 11. Discussion: Trees Feed Soil Microbes… And Vice Versa!

Editor's Notes

  1. Print slides and notes~!
  2. Dates, units of activity: seasonal trends versus treatment effects
  3. Dates, units of activity
  4. Peroxidase contain Fe, require peroxide, produce free radicals Get images of cellulose, lignin
  5. Dates, units of activity
  6. Peroxidase contain Fe, require peroxide, produce free radicals Get images of cellulose, lignin
  7. Forest killed by bark beetle girdling