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Medical Image
Processing
BY
VADI HENA
(140030702015)
ME (4TH SEM)
Medical Imaging
Medical imaging is the technique and process of
creating visual representations of the interior of a
body for clinical analysis and medical intervention,
as well as visual representation of the function of
some organs or tissues
Medical Imaging
Why is Medical Imaging Important?
To diagnose, treat and cure patients without causing any harmful side effects.
Computer vision can exploit texture, shape, contour and prior knowledge
along with contextual information from image sequence and provide 3D and
4D information that helps with better human understanding.
To see inside a patient without having to cut them open
The final objective is to benefit the patients without adding to the already
high medical costs.
Image Modalities
 X-ray
 Computed Tomography (CT)
 Magnetic Resonance Imaging (MRI)
 Single Photon Emission Computed Tomography (SPECT)
 Positron Emission Tomography (PET)
 Ultrasound
 Nuclear Magnetic Resonance (NMR)
Image Modalities
Computer Vision System
Levels of Processing
Levels of Processing
Low-level processing
◦ Standard procedures are applied to improve image quality
◦ Procedures are required to have no intelligent capabilities.
Intermediate-level processing
◦ Extract and characterize components in the image
◦ Some intelligent capabilities are required.
High-level processing
◦ Recognition and interpretation.
◦ Procedures require high intelligent capabilities.
Architecture Modules
Image Formation
It includes all the steps from capturing the image to forming
a digital image matrix.
◦ Image Acquisition
◦ Digitization
Image Acquisition
Imaging Database
Imaging Devices
 Examples:
◦ CT, X-rays, MRI, ultrasound, . . .
Digitization
Digital image processing implies a discrete nature of the images.
There are two steps in which it is done:
◦ Sampling
◦ Quantization
The sampling rate determines the spatial resolution of the digitized
image
The quantization level determines the number of grey levels in the
digitized image.
Example
Sampling
◦ Resolution
Quantization
◦ Grey Level
Preprocessing
Examples:
Noise suppression, contract enhancement, intensity equalization,
outlier elimination, bias compensation, time/space filtering, . . .
Preprocessing
 Enhancement
 Filtering
 Registration
 Calibration
 Transformation
Enhancement
The objectives of image enhancement techniques is to process an image
so that the result is more suitable than the original image for a specific
application .
Image enhancement techniques can be divided into two broad categories:
1.Spatial domain methods .
◦ Point Processing
◦ Histogram Equalization
◦ Image Subtraction
2 Frequency domain methods.
◦ Fourier transform
Enhancement
Example
Filtering
The objective of filtering is to remove noise.
Techniques
◦ Averaging Filter
◦ Median Filter
◦ Max/Min Filter
Smoothing
The aim of image smoothing is to diminish the effects of camera noise,
spurious pixel values, missing pixel values etc.
Two methods used for image smoothing.
◦ Neighborhood averaging and
◦ Edge-preserving smoothing.
Registration
Medical image registration, for data of the same patient taken at different
points in time such as change detection or tumor monitoring.
Unimodal Registration
This term refers to the relative
calibration of images that have been
acquired with the same modality.
Registration
Multi-Modal Registration
The images to be compared are
captured with different modalities.
Transformation
Image transforms can be simple arithmetic operations on images or
complex mathematical operations which convert images from one
representation to another.
The transformation is intended to select the most prominent or relevant
features.
◦ Discrete Fourier Transform DFT
◦ Discrete Cosine transform DCT
◦ Discrete Wavelet transform DWT
Example
Image analysis
It includes all the steps of processing
Like,
◦ Feature Extraction
◦ Segmentation
◦ Classification
Segmentation
Pixel based Segmentation
◦ Thresolding
◦ Adaptive Thresolding
◦ Clustering
Edge based Segmentation
◦ Live wire Segmentation
◦ Snake Algorithm
◦ Active contour Algorithm
Region Based Segmentation
◦ Agglomerative Algorithm
◦ Divisive Algorithm
Hybrid Algorithm
Segmentation
Feature extraction
Feature extraction is defined as the first stage of intelligent
(high level) image analysis.
It is followed by segmentation and classification
Levels Of Feature Extraction:
◦ Data level
◦ Region Level
◦ Texture Level
◦ Edge Level
◦ Pixel Level
Example
Classification
 Statistic Classifiers
 Syntactic Classifiers
Computational Intelligence-Based Classifiers
◦ Neural network
◦ Fuzzy Algorithm
Classification
Image Visualization
It refers to all types of manipulation of this matrix, resulting
in an optimized output of the image.
It includes,
◦ Shading
◦ Display
◦ Reconstruction
Example
Image Management
It sums up all techniques that provide the efficient storage,
communication, transmission, archiving, and access (retrieval) of image
data. Thus, the methods of telemedicine are also a part of the image
management.
It Includes,
◦ Compression
◦ Archive
◦ Retrieval
◦ Communication
Image Management
Compression
Retrieval
◦ Content Based Retrieval
◦ Text Based Retrieval
Communication
◦ DCOM
Archiving
◦ PACS Architecture
General Performance
Measures
 Positive: Object was observed
 Negative: Object was not observed
 True Positive
 False Negative
 True Negative
 False Positive
General Performance
Measures
True Positive
True Negative
False
Negative
False
Positive
True Condition
Object is
present.
Object is
NOT present.
Object is
observed.
Object is
NOT observed.
Observed
Information
Fusion Imaging
Melting together images from different modalities to create a
new (hybrid) image.
Multimodal Fusion
◦ Images of different modalities: PET, CT,MRI etc.
Example
CT and PET
Example
List of Applications
Diagnosis
◦ Combining information from multiple imaging modalities
Studying disease progression
◦ Monitoring changes in size, shape, position or image intensity over
time
Image guided surgery or radiotherapy
◦ Relating pre-operative images and surgical plans to the physical
reality of the patient
Patient comparison or atlas construction
◦ Relating one individual’s anatomy to a standardized atlas
Conclusion
The pragmatic issues of image generation, processing, presentation, and
archiving stood in the focus of research in image processing.
Because available computers at that time had by far not the necessary
capacity to hold and modify large image data in memory.
The former computation speed of image processing allowed only offline
calculations.
Until today, the automatic interpretation of images still is a major goal.
 Segmentation, classification, and measurements of biomedical images is
continuously improved and validated more accurately, since validation is
based on larger studies with high volumes of data.
References
 Computer Science Journal of Moldova, vol.22, no.2(65), 2014
 MA Anastasio, MA Kupinski, RM Nishikawa, “Optimization and FROC analysis of rule-based detection schemes using a multi objective approach,” IEEE
Trans. Med. Imag., vol. 17, no. 6, pp. 1089-1093, 2008
 Medical images simulation, storage, and processing on the European Data Grid testbed J. Montagnat1, F. Bellet1, H. Benoit-Cattin1, V. Breton4, L.
Brunie2, H. Duque1;2, Y. Legr_e4, I.E. Magnin1, L. Maigne4, S. Miguet3, J.-M. Pierson2, L. Seitz2, T. Tweed3
 Medical Image Analysis, by Atam P. Dhawan, IEEE Press, 2013.
 L. G. Brown, A survey of image registration techniques, ACM ComputingSurveys, 24:326-376, 2012
 B. Zitová and J. Flusser, Image registration methods: a survey, Image and vision computing, 21(11): 977-1000, 2013
 Tsai, A. Yezzi, and A. Willsky, A curve evolution approach to smoothing and segmentation using the Mumford-Shah functional, CVPR (2013), 1119–
1124.
 J.P.W Pluim, J.B.A. Maintz, and M.A. Viergever, Mutual-information-based Processing of medical images: a survey, IEEE Transactions on Medical
Imaging 22 (2013), no. 8, 986–1004.
 A new type of breast contact thermography plate: a preliminary and qualitative investigation of its potentiality on phantoms,
 Montruccoli GC, Montruccoli Salmi D, Casali F, Physica Medica, Vol. XX, N.1, January–March 2014 pp. 27–31
 Sarvazyan, A. P. (2012). "Mechanical Imaging of the Breast". IEEE Transactions on Medical Imaging 27 (9): 1275–1287.
 Van Raalte, H.; Sarvazyan, A. P. (2010). "Medical Imaging". IEEE Transactions on Biomedical Engineering 57 (7): 1736–1744.
 James A.P., Dasarathy B V. "Medical Image Fusion: A survey of state of the art".Information Fusion
Thank You!!

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Medical_Image_Processing-首节课.pptx

  • 2. Medical Imaging Medical imaging is the technique and process of creating visual representations of the interior of a body for clinical analysis and medical intervention, as well as visual representation of the function of some organs or tissues
  • 4. Why is Medical Imaging Important? To diagnose, treat and cure patients without causing any harmful side effects. Computer vision can exploit texture, shape, contour and prior knowledge along with contextual information from image sequence and provide 3D and 4D information that helps with better human understanding. To see inside a patient without having to cut them open The final objective is to benefit the patients without adding to the already high medical costs.
  • 5. Image Modalities  X-ray  Computed Tomography (CT)  Magnetic Resonance Imaging (MRI)  Single Photon Emission Computed Tomography (SPECT)  Positron Emission Tomography (PET)  Ultrasound  Nuclear Magnetic Resonance (NMR)
  • 9. Levels of Processing Low-level processing ◦ Standard procedures are applied to improve image quality ◦ Procedures are required to have no intelligent capabilities. Intermediate-level processing ◦ Extract and characterize components in the image ◦ Some intelligent capabilities are required. High-level processing ◦ Recognition and interpretation. ◦ Procedures require high intelligent capabilities.
  • 11. Image Formation It includes all the steps from capturing the image to forming a digital image matrix. ◦ Image Acquisition ◦ Digitization
  • 12. Image Acquisition Imaging Database Imaging Devices  Examples: ◦ CT, X-rays, MRI, ultrasound, . . .
  • 13.
  • 14. Digitization Digital image processing implies a discrete nature of the images. There are two steps in which it is done: ◦ Sampling ◦ Quantization The sampling rate determines the spatial resolution of the digitized image The quantization level determines the number of grey levels in the digitized image.
  • 16. Preprocessing Examples: Noise suppression, contract enhancement, intensity equalization, outlier elimination, bias compensation, time/space filtering, . . .
  • 17. Preprocessing  Enhancement  Filtering  Registration  Calibration  Transformation
  • 18. Enhancement The objectives of image enhancement techniques is to process an image so that the result is more suitable than the original image for a specific application . Image enhancement techniques can be divided into two broad categories: 1.Spatial domain methods . ◦ Point Processing ◦ Histogram Equalization ◦ Image Subtraction 2 Frequency domain methods. ◦ Fourier transform
  • 20. Filtering The objective of filtering is to remove noise. Techniques ◦ Averaging Filter ◦ Median Filter ◦ Max/Min Filter
  • 21. Smoothing The aim of image smoothing is to diminish the effects of camera noise, spurious pixel values, missing pixel values etc. Two methods used for image smoothing. ◦ Neighborhood averaging and ◦ Edge-preserving smoothing.
  • 22. Registration Medical image registration, for data of the same patient taken at different points in time such as change detection or tumor monitoring. Unimodal Registration This term refers to the relative calibration of images that have been acquired with the same modality.
  • 23. Registration Multi-Modal Registration The images to be compared are captured with different modalities.
  • 24. Transformation Image transforms can be simple arithmetic operations on images or complex mathematical operations which convert images from one representation to another. The transformation is intended to select the most prominent or relevant features. ◦ Discrete Fourier Transform DFT ◦ Discrete Cosine transform DCT ◦ Discrete Wavelet transform DWT
  • 26. Image analysis It includes all the steps of processing Like, ◦ Feature Extraction ◦ Segmentation ◦ Classification
  • 27. Segmentation Pixel based Segmentation ◦ Thresolding ◦ Adaptive Thresolding ◦ Clustering Edge based Segmentation ◦ Live wire Segmentation ◦ Snake Algorithm ◦ Active contour Algorithm Region Based Segmentation ◦ Agglomerative Algorithm ◦ Divisive Algorithm Hybrid Algorithm
  • 29. Feature extraction Feature extraction is defined as the first stage of intelligent (high level) image analysis. It is followed by segmentation and classification Levels Of Feature Extraction: ◦ Data level ◦ Region Level ◦ Texture Level ◦ Edge Level ◦ Pixel Level
  • 31. Classification  Statistic Classifiers  Syntactic Classifiers Computational Intelligence-Based Classifiers ◦ Neural network ◦ Fuzzy Algorithm
  • 33. Image Visualization It refers to all types of manipulation of this matrix, resulting in an optimized output of the image. It includes, ◦ Shading ◦ Display ◦ Reconstruction
  • 35. Image Management It sums up all techniques that provide the efficient storage, communication, transmission, archiving, and access (retrieval) of image data. Thus, the methods of telemedicine are also a part of the image management. It Includes, ◦ Compression ◦ Archive ◦ Retrieval ◦ Communication
  • 36. Image Management Compression Retrieval ◦ Content Based Retrieval ◦ Text Based Retrieval Communication ◦ DCOM Archiving ◦ PACS Architecture
  • 37. General Performance Measures  Positive: Object was observed  Negative: Object was not observed  True Positive  False Negative  True Negative  False Positive
  • 38. General Performance Measures True Positive True Negative False Negative False Positive True Condition Object is present. Object is NOT present. Object is observed. Object is NOT observed. Observed Information
  • 39. Fusion Imaging Melting together images from different modalities to create a new (hybrid) image. Multimodal Fusion ◦ Images of different modalities: PET, CT,MRI etc.
  • 42. List of Applications Diagnosis ◦ Combining information from multiple imaging modalities Studying disease progression ◦ Monitoring changes in size, shape, position or image intensity over time Image guided surgery or radiotherapy ◦ Relating pre-operative images and surgical plans to the physical reality of the patient Patient comparison or atlas construction ◦ Relating one individual’s anatomy to a standardized atlas
  • 43. Conclusion The pragmatic issues of image generation, processing, presentation, and archiving stood in the focus of research in image processing. Because available computers at that time had by far not the necessary capacity to hold and modify large image data in memory. The former computation speed of image processing allowed only offline calculations. Until today, the automatic interpretation of images still is a major goal.  Segmentation, classification, and measurements of biomedical images is continuously improved and validated more accurately, since validation is based on larger studies with high volumes of data.
  • 44. References  Computer Science Journal of Moldova, vol.22, no.2(65), 2014  MA Anastasio, MA Kupinski, RM Nishikawa, “Optimization and FROC analysis of rule-based detection schemes using a multi objective approach,” IEEE Trans. Med. Imag., vol. 17, no. 6, pp. 1089-1093, 2008  Medical images simulation, storage, and processing on the European Data Grid testbed J. Montagnat1, F. Bellet1, H. Benoit-Cattin1, V. Breton4, L. Brunie2, H. Duque1;2, Y. Legr_e4, I.E. Magnin1, L. Maigne4, S. Miguet3, J.-M. Pierson2, L. Seitz2, T. Tweed3  Medical Image Analysis, by Atam P. Dhawan, IEEE Press, 2013.  L. G. Brown, A survey of image registration techniques, ACM ComputingSurveys, 24:326-376, 2012  B. Zitová and J. Flusser, Image registration methods: a survey, Image and vision computing, 21(11): 977-1000, 2013  Tsai, A. Yezzi, and A. Willsky, A curve evolution approach to smoothing and segmentation using the Mumford-Shah functional, CVPR (2013), 1119– 1124.  J.P.W Pluim, J.B.A. Maintz, and M.A. Viergever, Mutual-information-based Processing of medical images: a survey, IEEE Transactions on Medical Imaging 22 (2013), no. 8, 986–1004.  A new type of breast contact thermography plate: a preliminary and qualitative investigation of its potentiality on phantoms,  Montruccoli GC, Montruccoli Salmi D, Casali F, Physica Medica, Vol. XX, N.1, January–March 2014 pp. 27–31  Sarvazyan, A. P. (2012). "Mechanical Imaging of the Breast". IEEE Transactions on Medical Imaging 27 (9): 1275–1287.  Van Raalte, H.; Sarvazyan, A. P. (2010). "Medical Imaging". IEEE Transactions on Biomedical Engineering 57 (7): 1736–1744.  James A.P., Dasarathy B V. "Medical Image Fusion: A survey of state of the art".Information Fusion